ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast07e01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK061004.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H04, full insert sequence Length = 1142 Score = 180 bits (91), Expect = 3e-42 Identities = 199/235 (84%) Strand = Plus / Plus Query: 178 ggttcgcgatgctgcggaaggcggccgtcgggttcctcgcctgcgtcgtgctctacctcg 237 ||||||||||||||||||||| |||||||| |||||||| |||| || |||||||||| Sbjct: 140 ggttcgcgatgctgcggaaggtggccgtcgccttcctcgcttgcgccgccctctacctcg 199 Query: 238 ccttctcctcctacctccgtagccagagggctgcatatgttctgttaccagcagttactc 297 ||||| || ||||| ||| || |||| || | | |||| ||||| ||||||||| Sbjct: 200 ccttcgccgcctactcccgccgcgagagccttggagaggttcgattacctgcagttacta 259 Query: 298 acagggtatacctggacgtggaaattgatggccaaaatataggtagaattgtcatcggtc 357 ||||||||||| |||| |||||||||||||| ||| ||||||||||||||||||| || | Sbjct: 260 acagggtatacttggatgtggaaattgatgggcaacatataggtagaattgtcattggcc 319 Query: 358 tttatggggaagttgtgccaaaaacagttgaaaatttcagagccctttgtacagg 412 ||||||| || ||||||||||||||||||| |||||| || || ||||||||||| Sbjct: 320 tttatggagatgttgtgccaaaaacagttgcaaattttagggctctttgtacagg 374 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Plus Query: 66 tctgctccgtcgccgatctcgcctccgccgc 96 |||||| |||||||||||||| ||||||||| Sbjct: 2 tctgcttcgtcgccgatctcgtctccgccgc 32
>gb|AY106396.1| Zea mays PCO128788 mRNA sequence Length = 1071 Score = 149 bits (75), Expect = 9e-33 Identities = 197/238 (82%) Strand = Plus / Plus Query: 181 tcgcgatgctgcggaaggcggccgtcgggttcctcgcctgcgtcgtgctctacctcgcct 240 |||| |||||||||||||| | ||||| ||| |||||||| || ||| |||||||| Sbjct: 138 tcgctatgctgcggaaggccgtcgtcgccttcatcgcctgcaccgccttcttcctcgcct 197 Query: 241 tctcctcctacctccgtagccagagggctgcatatgttctgttaccagcagttactcaca 300 |||| ||||| |||| ||||| | | |||| | |||| ||||||||||||||||||| Sbjct: 198 tctctgcctactcccgtcgccagggcgttgcagaggttcaattaccagcagttactcaca 257 Query: 301 gggtatacctggacgtggaaattgatggccaaaatataggtagaattgtcatcggtcttt 360 |||| ||||| || || ||||||||||||||| | |||||||||||||| || ||||| | Sbjct: 258 gggtctacctagatgtagaaattgatggccaacacataggtagaattgttattggtctct 317 Query: 361 atggggaagttgtgccaaaaacagttgaaaatttcagagccctttgtacaggtgnaaa 418 ||||||| || || ||||||||||||||||| || || || ||||||||||||| ||| Sbjct: 318 atggggaggtcgttccaaaaacagttgaaaactttagggctctttgtacaggtgaaaa 375
>gb|BT018036.1| Zea mays clone EL01N0530F05.c mRNA sequence Length = 970 Score = 147 bits (74), Expect = 4e-32 Identities = 196/237 (82%) Strand = Plus / Plus Query: 187 tgctgcggaaggcggccgtcgggttcctcgcctgcgtcgtgctctacctcgccttctcct 246 ||||||||||||| | ||||| ||| |||||||| || ||| |||||||||||| Sbjct: 65 tgctgcggaaggccgtcgtcgccttcatcgcctgcaccgccttcttcctcgccttctctg 124 Query: 247 cctacctccgtagccagagggctgcatatgttctgttaccagcagttactcacagggtat 306 ||||| |||| ||||| | | |||| | |||| ||||||||||||||||||||||| | Sbjct: 125 cctactcccgtcgccagggcgttgcagaggttcaattaccagcagttactcacagggtct 184 Query: 307 acctggacgtggaaattgatggccaaaatataggtagaattgtcatcggtctttatgggg 366 |||| || || ||||||||||||||| | |||||||||||||| || ||||| ||||||| Sbjct: 185 acctagatgtagaaattgatggccaacacataggtagaattgttattggtctctatgggg 244 Query: 367 aagttgtgccaaaaacagttgaaaatttcagagccctttgtacaggtgnaaagggtg 423 | || || ||||||||||||||||| || || || ||||||||||||| ||| |||| Sbjct: 245 aggtcgttccaaaaacagttgaaaactttagggctctttgtacaggtgaaaaaggtg 301
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 178 ggttcgcgatgctgcggaaggcggccgtcgggttcctcgcctgcgtcgtgctctacctcg 237 ||||||||||||||||||||| |||||||| |||||||| |||| || |||||||||| Sbjct: 20850527 ggttcgcgatgctgcggaaggtggccgtcgccttcctcgcttgcgccgccctctacctcg 20850586 Query: 238 ccttctcctcctac 251 ||||| || ||||| Sbjct: 20850587 ccttcgccgcctac 20850600 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 282 ttaccagcagttactcacagggtatacctggacgtggaaattgatggccaaaatataggt 341 ||||| ||||||||| ||||||||||| |||| |||||||||||||| ||| |||||||| Sbjct: 20851276 ttacctgcagttactaacagggtatacttggatgtggaaattgatgggcaacatataggt 20851335 Query: 342 a 342 | Sbjct: 20851336 a 20851336 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 338 aggtagaattgtcatcggtctttatggggaagttgtgccaaaaacagttg 387 ||||||||||||||| || |||||||| || ||||||||||||||||||| Sbjct: 20851472 aggtagaattgtcattggcctttatggagatgttgtgccaaaaacagttg 20851521 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Plus Query: 66 tctgctccgtcgccgatctcgcctccgccgc 96 |||||| |||||||||||||| ||||||||| Sbjct: 20850389 tctgcttcgtcgccgatctcgtctccgccgc 20850419
>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0229B10 Length = 114509 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 178 ggttcgcgatgctgcggaaggcggccgtcgggttcctcgcctgcgtcgtgctctacctcg 237 ||||||||||||||||||||| |||||||| |||||||| |||| || |||||||||| Sbjct: 42753 ggttcgcgatgctgcggaaggtggccgtcgccttcctcgcttgcgccgccctctacctcg 42812 Query: 238 ccttctcctcctac 251 ||||| || ||||| Sbjct: 42813 ccttcgccgcctac 42826 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 282 ttaccagcagttactcacagggtatacctggacgtggaaattgatggccaaaatataggt 341 ||||| ||||||||| ||||||||||| |||| |||||||||||||| ||| |||||||| Sbjct: 43502 ttacctgcagttactaacagggtatacttggatgtggaaattgatgggcaacatataggt 43561 Query: 342 a 342 | Sbjct: 43562 a 43562 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 338 aggtagaattgtcatcggtctttatggggaagttgtgccaaaaacagttg 387 ||||||||||||||| || |||||||| || ||||||||||||||||||| Sbjct: 43698 aggtagaattgtcattggcctttatggagatgttgtgccaaaaacagttg 43747 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Plus Query: 66 tctgctccgtcgccgatctcgcctccgccgc 96 |||||| |||||||||||||| ||||||||| Sbjct: 42615 tctgcttcgtcgccgatctcgtctccgccgc 42645
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 178 ggttcgcgatgctgcggaaggcggccgtcgggttcctcgcctgcgtcgtgctctacctcg 237 ||||||||||||||||||||| |||||||| |||||||| |||| || |||||||||| Sbjct: 125556 ggttcgcgatgctgcggaaggtggccgtcgccttcctcgcttgcgccgccctctacctcg 125615 Query: 238 ccttctcctcctac 251 ||||| || ||||| Sbjct: 125616 ccttcgccgcctac 125629 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 282 ttaccagcagttactcacagggtatacctggacgtggaaattgatggccaaaatataggt 341 ||||| ||||||||| ||||||||||| |||| |||||||||||||| ||| |||||||| Sbjct: 126305 ttacctgcagttactaacagggtatacttggatgtggaaattgatgggcaacatataggt 126364 Query: 342 a 342 | Sbjct: 126365 a 126365 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 338 aggtagaattgtcatcggtctttatggggaagttgtgccaaaaacagttg 387 ||||||||||||||| || |||||||| || ||||||||||||||||||| Sbjct: 126501 aggtagaattgtcattggcctttatggagatgttgtgccaaaaacagttg 126550 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Plus Query: 66 tctgctccgtcgccgatctcgcctccgccgc 96 |||||| |||||||||||||| ||||||||| Sbjct: 125418 tctgcttcgtcgccgatctcgtctccgccgc 125448
>dbj|AK070944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066C07, full insert sequence Length = 2331 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 178 ggttcgcgatgctgcggaaggcggccgtcgggttcctcgcctgcgtcgtgctctacctcg 237 ||||||||||||||||||||| |||||||| |||||||| |||| || |||||||||| Sbjct: 144 ggttcgcgatgctgcggaaggtggccgtcgccttcctcgcttgcgccgccctctacctcg 203 Query: 238 ccttctcctcctac 251 ||||| || ||||| Sbjct: 204 ccttcgccgcctac 217 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 282 ttaccagcagttactcacagggtatacctggacgtggaaattgatggccaaaatataggt 341 ||||| ||||||||| ||||||||||| |||| |||||||||||||| ||| |||||||| Sbjct: 892 ttacctgcagttactaacagggtatacttggatgtggaaattgatgggcaacatataggt 951 Query: 342 a 342 | Sbjct: 952 a 952 Score = 67.9 bits (34), Expect = 3e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 338 aggtagaattgtcatcggtctttatggggaagttgtgccaaaaacagttg 387 ||||||||||||||| || |||||||| || ||||||||||||||||||| Sbjct: 1088 aggtagaattgtcattggcctttatggagatgttgtgccaaaaacagttg 1137 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Plus Query: 66 tctgctccgtcgccgatctcgcctccgccgc 96 |||||| |||||||||||||| ||||||||| Sbjct: 6 tctgcttcgtcgccgatctcgtctccgccgc 36
>ref|XM_649326.1| Entamoeba histolytica HM-1:IMSS peptidyl-prolyl cis-trans isomerase (54.t00038) partial mRNA Length = 600 Score = 52.0 bits (26), Expect = 0.002 Identities = 64/77 (83%) Strand = Plus / Plus Query: 342 agaattgtcatcggtctttatggggaagttgtgccaaaaacagttgaaaatttcagagcc 401 |||||||| || ||||||||||| ||| | || || ||||| || |||||||||||||| Sbjct: 139 agaattgtaattggtctttatggagaaatagtacctaaaactgtagaaaatttcagagca 198 Query: 402 ctttgtacaggtgnaaa 418 | |||||||||| ||| Sbjct: 199 ttatgtacaggtgaaaa 215
>gb|DQ097008.1| Xenopus laevis somi43 mRNA, complete sequence Length = 1083 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 372 gtgccaaaaacagttgaaaatttcagagccctttgtacagg 412 ||||||||||| | ||| ||||| ||||||||||||||||| Sbjct: 198 gtgccaaaaactgctgataattttagagccctttgtacagg 238
>ref|XM_393381.2| PREDICTED: Apis mellifera similar to Peptidyl-prolyl cis-trans isomerase (PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-binding protein) (LOC409890), mRNA Length = 1636 Score = 46.1 bits (23), Expect = 0.097 Identities = 46/54 (85%) Strand = Plus / Plus Query: 369 gttgtgccaaaaacagttgaaaatttcagagccctttgtacaggtgnaaagggt 422 ||||| |||||||| | ||||||||| ||||||||||||| |||| |||||| Sbjct: 335 gttgtcccaaaaactgcagaaaatttccgagccctttgtactggtgagaagggt 388
>ref|NM_116068.2| Arabidopsis thaliana ROC4; peptidyl-prolyl cis-trans isomerase AT3G62030 (ROC4) mRNA, complete cds Length = 1112 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 342 agaattgtcatcggtctttatggggaagttgtgccaaaaacagttgaaaa 391 |||||||| || ||||| | ||| ||||||||||| ||||| |||||||| Sbjct: 426 agaattgtgatgggtctctttggagaagttgtgcctaaaaccgttgaaaa 475
>emb|AL138651.1|ATT17J13 Arabidopsis thaliana DNA chromosome 3, BAC clone T17J13 Length = 85217 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 342 agaattgtcatcggtctttatggggaagttgtgccaaaaacagttgaaaa 391 |||||||| || ||||| | ||| ||||||||||| ||||| |||||||| Sbjct: 1951 agaattgtgatgggtctctttggagaagttgtgcctaaaaccgttgaaaa 2000
>emb|AL138642.1|ATF21F14 Arabidopsis thaliana DNA chromosome 3, BAC clone F21F14 Length = 142001 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 342 agaattgtcatcggtctttatggggaagttgtgccaaaaacagttgaaaa 391 |||||||| || ||||| | ||| ||||||||||| ||||| |||||||| Sbjct: 136978 agaattgtgatgggtctctttggagaagttgtgcctaaaaccgttgaaaa 137027
>gb|AY093284.1| Arabidopsis thaliana peptidylprolyl isomerase ROC4 (At3g62030) mRNA, complete cds Length = 868 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 342 agaattgtcatcggtctttatggggaagttgtgccaaaaacagttgaaaa 391 |||||||| || ||||| | ||| ||||||||||| ||||| |||||||| Sbjct: 328 agaattgtgatgggtctctttggagaagttgtgcctaaaaccgttgaaaa 377
>gb|AY059843.1| Arabidopsis thaliana peptidylprolyl isomerase ROC4 (At3g62030; F21F14.200) mRNA, complete cds Length = 945 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 342 agaattgtcatcggtctttatggggaagttgtgccaaaaacagttgaaaa 391 |||||||| || ||||| | ||| ||||||||||| ||||| |||||||| Sbjct: 391 agaattgtgatgggtctctttggagaagttgtgcctaaaaccgttgaaaa 440
>gb|AF325026.2|AF325026 Arabidopsis thaliana AT3g62030 (AT3g62030/F21F14_200) mRNA, complete cds Length = 957 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 342 agaattgtcatcggtctttatggggaagttgtgccaaaaacagttgaaaa 391 |||||||| || ||||| | ||| ||||||||||| ||||| |||||||| Sbjct: 362 agaattgtgatgggtctctttggagaagttgtgcctaaaaccgttgaaaa 411
>ref|XM_624413.1| PREDICTED: Apis mellifera similar to CG2852-PA, isoform A (LOC552033), mRNA Length = 782 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 375 ccaaaaacagttgaaaatttca 396 |||||||||||||||||||||| Sbjct: 100 ccaaaaacagttgaaaatttca 121
>emb|BX822252.1|CNS0A7LV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB23ZD07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 927 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 342 agaattgtcatcggtctttatggggaagttgtgccaaaaacagttgaaaa 391 |||||||| || ||||| | ||| ||||||||||| ||||| |||||||| Sbjct: 369 agaattgtgatgggtctctttggagaagttgtgcctaaaaccgttgaaaa 418
>emb|BX822280.1|CNS0A66C Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB26ZA09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 900 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 342 agaattgtcatcggtctttatggggaagttgtgccaaaaacagttgaaaa 391 |||||||| || ||||| | ||| ||||||||||| ||||| |||||||| Sbjct: 341 agaattgtgatgggtctctttggagaagttgtgcctaaaaccgttgaaaa 390
>emb|BX822116.1|CNS0A63K Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB14ZB12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 986 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 342 agaattgtcatcggtctttatggggaagttgtgccaaaaacagttgaaaa 391 |||||||| || ||||| | ||| ||||||||||| ||||| |||||||| Sbjct: 353 agaattgtgatgggtctctttggagaagttgtgcctaaaaccgttgaaaa 402
>gb|AY086899.1| Arabidopsis thaliana clone 29220 mRNA, complete sequence Length = 1056 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 342 agaattgtcatcggtctttatggggaagttgtgccaaaaacagttgaaaa 391 |||||||| || ||||| | ||| ||||||||||| ||||| |||||||| Sbjct: 427 agaattgtgatgggtctctttggagaagttgtgcctaaaaccgttgaaaa 476
>emb|AL079303.3|CNS00M8O Human chromosome 14 DNA sequence BAC R-964E11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 199891 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 382 cagttgaaaatttcagagccct 403 |||||||||||||||||||||| Sbjct: 123765 cagttgaaaatttcagagccct 123744
>gb|U42724.1|ATU42724 Arabidopsis thaliana cyclophilin (ROC4) gene, nuclear gene encoding chloroplast protein, complete cds Length = 3414 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 342 agaattgtcatcggtctttatggggaagttgtgccaaaaacagttgaaaa 391 |||||||| || ||||| | ||| ||||||||||| ||||| |||||||| Sbjct: 1852 agaattgtgatgggtctctttggagaagttgtgcctaaaaccgttgaaaa 1901
>gb|L14845.1|ATHROC4ARA Arabidopsis thaliana nuclear-encoded chloroplast stromal cyclophilin (ROC4) mRNA, complete cds Length = 925 Score = 44.1 bits (22), Expect = 0.38 Identities = 43/50 (86%) Strand = Plus / Plus Query: 342 agaattgtcatcggtctttatggggaagttgtgccaaaaacagttgaaaa 391 |||||||| || ||||| | ||| ||||||||||| ||||| |||||||| Sbjct: 355 agaattgtgatgggtctctttggagaagttgtgcctaaaaccgttgaaaa 404
>gb|AE006711.1| Sulfolobus solfataricus P2 section 70 of 272 of the complete genome Length = 8615 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 239 cttctcctcctacctccgtag 259 ||||||||||||||||||||| Sbjct: 6263 cttctcctcctacctccgtag 6283
>gb|AC025540.7| Homo sapiens BAC clone RP11-295N22 from 7, complete sequence Length = 160896 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 281 gttaccagcagttactcacag 301 ||||||||||||||||||||| Sbjct: 116858 gttaccagcagttactcacag 116838
>gb|AC091827.2| Homo sapiens chromosome 5 clone CTD-2006A19, complete sequence Length = 164820 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 aaaaacagttgaaaatttcag 397 ||||||||||||||||||||| Sbjct: 29579 aaaaacagttgaaaatttcag 29559
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 205 tcgggttcctcgcctgcgtcgtgct 229 |||| |||||||||||||||||||| Sbjct: 1924869 tcggcttcctcgcctgcgtcgtgct 1924845
>gb|U17900.1|OSU17900 Orpinomyces sp. PC-2 cyclophilin B precursor (cypB) mRNA, complete cds Length = 708 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 339 ggtagaattgtcatcggtctttatggggaagttgtgccaaaaacagttgaaaa 391 ||||||||||| | ||| | ||||| |||||||| |||||||| |||||||| Sbjct: 157 ggtagaattgttttaggtttatatggtgaagttgttccaaaaactgttgaaaa 209
>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence Length = 412348 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 116 gcgagcagattcgcgccgggctcgcggcg 144 |||||||||||||||| ||||||||||| Sbjct: 183213 gcgagcagattcgcgcgcggctcgcggcg 183241
>gb|DQ317303.1| Orpinomyces sp. PC-2 cyclophilin B precursor (CyPB) gene, complete cds Length = 1031 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 339 ggtagaattgtcatcggtctttatggggaagttgtgccaaaaacagttgaaaa 391 ||||||||||| | ||| | ||||| |||||||| |||||||| |||||||| Sbjct: 130 ggtagaattgttttaggtttatatggtgaagttgttccaaaaactgttgaaaa 182
>ref|XM_581930.2| PREDICTED: Bos taurus similar to Zinc finger BED domain containing protein 4 (LOC505614), mRNA Length = 2427 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 gcccccggccacctcggggt 180 |||||||||||||||||||| Sbjct: 438 gcccccggccacctcggggt 419
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ccaaaaacagttgaaaattt 394 |||||||||||||||||||| Sbjct: 902697 ccaaaaacagttgaaaattt 902716
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ccaaaaacagttgaaaattt 394 |||||||||||||||||||| Sbjct: 995100 ccaaaaacagttgaaaattt 995119
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome Length = 2809422 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ccaaaaacagttgaaaattt 394 |||||||||||||||||||| Sbjct: 958254 ccaaaaacagttgaaaattt 958273
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ccaaaaacagttgaaaattt 394 |||||||||||||||||||| Sbjct: 854643 ccaaaaacagttgaaaattt 854662
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome Length = 2872769 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ccaaaaacagttgaaaattt 394 |||||||||||||||||||| Sbjct: 934780 ccaaaaacagttgaaaattt 934799
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 cggcgagcagattcgcgccg 133 |||||||||||||||||||| Sbjct: 2747292 cggcgagcagattcgcgccg 2747273
>gb|AC096573.1| Homo sapiens BAC clone RP11-458F24 from 2, complete sequence Length = 96987 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tgcagaagtctaggcctgtt 39 |||||||||||||||||||| Sbjct: 79372 tgcagaagtctaggcctgtt 79391
>gb|AC097231.3| Sus scrofa clone RP44-504L18, complete sequence Length = 161823 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 aaaaacagttgaaaatttca 396 |||||||||||||||||||| Sbjct: 90608 aaaaacagttgaaaatttca 90589
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ccaaaaacagttgaaaattt 394 |||||||||||||||||||| Sbjct: 918728 ccaaaaacagttgaaaattt 918747
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome Length = 2814816 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ccaaaaacagttgaaaattt 394 |||||||||||||||||||| Sbjct: 918816 ccaaaaacagttgaaaattt 918835
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome Length = 2902619 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ccaaaaacagttgaaaattt 394 |||||||||||||||||||| Sbjct: 950688 ccaaaaacagttgaaaattt 950707
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome Length = 2742531 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ccaaaaacagttgaaaattt 394 |||||||||||||||||||| Sbjct: 886249 ccaaaaacagttgaaaattt 886268
>dbj|AB015981.1| Staphylococcus aureus genes for OrfA, MnhA, MnhB, MnhC, MnhD, MnhE, MnhF and MnhG, complete cds Length = 6995 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 ccaaaaacagttgaaaattt 394 |||||||||||||||||||| Sbjct: 130 ccaaaaacagttgaaaattt 111 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,292,685 Number of Sequences: 3902068 Number of extensions: 3292685 Number of successful extensions: 61327 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61058 Number of HSP's gapped (non-prelim): 267 length of query: 446 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 424 effective length of database: 17,147,199,772 effective search space: 7270412703328 effective search space used: 7270412703328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
