ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast07a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC147557.4| Mus musculus BAC clone RP23-452M8 from chromosome... 44 0.27
2gb|AC124568.3| Mus musculus BAC clone RP23-145K4 from 14, comple... 44 0.27
3gb|AC018691.10| Homo sapiens BAC clone RP11-547F10 from 2, compl... 44 0.27
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.27
5emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4,... 44 0.27
6ref|XM_550397.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.1
7gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genom... 42 1.1
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.1
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
11gb|AC106783.3| Homo sapiens chromosome 16 clone RP11-347K10, com... 42 1.1
12dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
13dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
14dbj|AK122068.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
15gb|DQ213413.1| Taeniopygia guttata clone 0065P0005E12 brain deri... 40 4.3
16ref|NM_192778.1| Oryza sativa (japonica cultivar-group), predic... 40 4.3
17gb|AY266421.1| Rattus norvegicus prostaglandin E2 receptor type ... 40 4.3
18gb|AC124083.14| Mus musculus chromosome 5, clone RP24-400H4, com... 40 4.3
19gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 4.3
20gb|AC147390.4| Pan troglodytes BAC clone RP43-51G14 from 7, comp... 40 4.3
21gb|AC146097.4| Pan troglodytes BAC clone RP43-50K16 from 7, comp... 40 4.3
22gb|AC110376.4| Mus musculus chromosome 12 clone RP23-441E7, comp... 40 4.3
23gb|AC140051.10| Mus musculus chromosome 12, clone RP23-296J15, c... 40 4.3
24gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 4.3
25emb|CR376723.15| Zebrafish DNA sequence from clone DKEY-90N12 in... 40 4.3
26emb|AL354763.17| Human DNA sequence from clone RP11-357L1 on chr... 40 4.3
27emb|AL023799.5|HS322P7 Human DNA sequence from clone RP3-322P7 o... 40 4.3
28gb|AC092562.4| Papio hamadryas BAC RP41-285I13 (Rosewell Park Ca... 40 4.3
29ref|XM_694178.1| PREDICTED: Danio rerio similar to Synapsin-1 (S... 40 4.3
30gb|AC022087.8|AC022087 Homo sapiens chromosome 15 clone CTD-3110... 40 4.3
31gb|AC151581.2| Pan troglodytes BAC clone RP43-166C19 from chromo... 40 4.3
32gb|AC126415.9| Mus musculus chromosome 5, clone RP24-476K21, com... 40 4.3
33gb|AC132572.3| Mus musculus BAC clone RP24-409B13 from chromosom... 40 4.3
34gb|AC007312.1|AC007312 Homo sapiens clone RP11-349E11 from 7p14-... 40 4.3
35dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
36dbj|AK120636.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
37ref|XM_565906.1| Anopheles gambiae str. PEST ENSANGP00000028483 ... 40 4.3
38dbj|D16583.1|HUMLHDC Homo sapiens gene for L-histidine decarboxy... 40 4.3
39emb|AL806521.9| Mouse DNA sequence from clone RP23-385N7 on chro... 40 4.3 
>gb|AC147557.4| Mus musculus BAC clone RP23-452M8 from chromosome 14, complete sequence
          Length = 174133

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 173    tgccgccctcttctgctcttgctcct 198
              |||||| |||||||||||||||||||
Sbjct: 163553 tgccgcgctcttctgctcttgctcct 163528
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>gb|AC124568.3| Mus musculus BAC clone RP23-145K4 from 14, complete sequence
          Length = 222946

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 173   tgccgccctcttctgctcttgctcct 198
             |||||| |||||||||||||||||||
Sbjct: 67563 tgccgcgctcttctgctcttgctcct 67538
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>gb|AC018691.10| Homo sapiens BAC clone RP11-547F10 from 2, complete sequence
          Length = 187298

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 184   tctgctcttgctccttgccttcctcc 209
             ||||||||| ||||||||||||||||
Sbjct: 29161 tctgctcttcctccttgccttcctcc 29136
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 4        cgatgatggccgcagcgagaatggccttcg 33
                ||||||||||||||||||||| ||| ||||
Sbjct: 13638354 cgatgatggccgcagcgagaacggcgttcg 13638383
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>emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079M09,
             complete sequence
          Length = 187359

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 4     cgatgatggccgcagcgagaatggccttcg 33
             ||||||||||||||||||||| ||| ||||
Sbjct: 32962 cgatgatggccgcagcgagaacggcgttcg 32991
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>ref|XM_550397.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4001

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 253 agaagaagccggcgcccgcggctggggaggagg 285
           |||||||||||||| | ||||| ||||||||||
Sbjct: 183 agaagaagccggcggcggcggcgggggaggagg 215
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>gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genomic sequence, complete
             sequence
          Length = 121849

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 53    cctccgcctcccttccccgcc 73
             |||||||||||||||||||||
Sbjct: 27399 cctccgcctcccttccccgcc 27419
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 53       cctccgcctcccttccccgcc 73
                |||||||||||||||||||||
Sbjct: 27151492 cctccgcctcccttccccgcc 27151472
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 53       cctccgcctcccttccccgcc 73
                |||||||||||||||||||||
Sbjct: 27242815 cctccgcctcccttccccgcc 27242795
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 253     agaagaagccggcgcccgcggctggggaggagg 285
               |||||||||||||| | ||||| ||||||||||
Sbjct: 4243350 agaagaagccggcggcggcggcgggggaggagg 4243318



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 262      cggcgcccgcggctggggaggagg 285
                ||||||||||||| ||||||||||
Sbjct: 24368125 cggcgcccgcggccggggaggagg 24368148
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>gb|AC106783.3| Homo sapiens chromosome 16 clone RP11-347K10, complete sequence
          Length = 179585

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 181    tcttctgctcttgctccttgccttcctcc 209
              |||||||||||| |||||| |||||||||
Sbjct: 113856 tcttctgctcttcctccttcccttcctcc 113884
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>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1174_D05
          Length = 128525

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 253   agaagaagccggcgcccgcggctggggaggagg 285
             |||||||||||||| | ||||| ||||||||||
Sbjct: 81317 agaagaagccggcggcggcggcgggggaggagg 81285
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>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0666G04
          Length = 141983

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 253   agaagaagccggcgcccgcggctggggaggagg 285
             |||||||||||||| | ||||| ||||||||||
Sbjct: 23120 agaagaagccggcggcggcggcgggggaggagg 23088
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>dbj|AK122068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117G13, full
           insert sequence
          Length = 4002

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 253 agaagaagccggcgcccgcggctggggaggagg 285
           |||||||||||||| | ||||| ||||||||||
Sbjct: 184 agaagaagccggcggcggcggcgggggaggagg 216
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>gb|DQ213413.1| Taeniopygia guttata clone 0065P0005E12 brain derived neurotrophic
           factor-like mRNA, complete sequence
          Length = 1457

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 105 ggctgcaggggcatagccaa 124
           ||||||||||||||||||||
Sbjct: 972 ggctgcaggggcatagccaa 991
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>ref|NM_192778.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1083

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 262 cggcgcccgcggctggggaggagg 285
           ||||||||||||| ||||||||||
Sbjct: 76  cggcgcccgcggccggggaggagg 53
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>gb|AY266421.1| Rattus norvegicus prostaglandin E2 receptor type 4 (Ptger) gene,
           exons 1 and 2 and partial cds
          Length = 2692

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 gcccgcggctggggaggagg 285
           ||||||||||||||||||||
Sbjct: 502 gcccgcggctggggaggagg 521
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>gb|AC124083.14| Mus musculus chromosome 5, clone RP24-400H4, complete sequence
          Length = 172336

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    cctcttctgctcttgctcct 198
              ||||||||||||||||||||
Sbjct: 116221 cctcttctgctcttgctcct 116240
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    gaggagaagaagccggcgcc 268
              ||||||||||||||||||||
Sbjct: 235831 gaggagaagaagccggcgcc 235812
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>gb|AC147390.4| Pan troglodytes BAC clone RP43-51G14 from 7, complete sequence
          Length = 168525

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   ggctggggaggaggagaaag 291
             ||||||||||||||||||||
Sbjct: 29060 ggctggggaggaggagaaag 29041
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>gb|AC146097.4| Pan troglodytes BAC clone RP43-50K16 from 7, complete sequence
          Length = 183088

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   ggctggggaggaggagaaag 291
             ||||||||||||||||||||
Sbjct: 61452 ggctggggaggaggagaaag 61471
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>gb|AC110376.4| Mus musculus chromosome 12 clone RP23-441E7, complete sequence
          Length = 190516

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 276    ggggaggaggagaaaggcga 295
              ||||||||||||||||||||
Sbjct: 176347 ggggaggaggagaaaggcga 176328
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>gb|AC140051.10| Mus musculus chromosome 12, clone RP23-296J15, complete sequence
          Length = 205123

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   ggggaggaggagaaaggcga 295
             ||||||||||||||||||||
Sbjct: 58767 ggggaggaggagaaaggcga 58748
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>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of
              11 of the complete sequence
          Length = 613322

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    ggctggggaggaggagaaag 291
              ||||||||||||||||||||
Sbjct: 394864 ggctggggaggaggagaaag 394845
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>emb|CR376723.15| Zebrafish DNA sequence from clone DKEY-90N12 in linkage group 8, complete
              sequence
          Length = 213541

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    gaggagaagaagccggcgcc 268
              ||||||||||||||||||||
Sbjct: 123005 gaggagaagaagccggcgcc 123024
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>emb|AL354763.17| Human DNA sequence from clone RP11-357L1 on chromosome 13 Contains an
              ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G
              variant 1 (ATP6V1G1) pseudogene, complete sequence
          Length = 192963

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    ggctggggaggaggagaaag 291
              ||||||||||||||||||||
Sbjct: 121435 ggctggggaggaggagaaag 121416
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>emb|AL023799.5|HS322P7 Human DNA sequence from clone RP3-322P7 on chromosome Xq25-26.2
             Contains the 5' end of a novel gene (FLJ20095) and a CpG
             island, complete sequence
          Length = 93705

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   ggaggaggagaaaggcgagg 297
             ||||||||||||||||||||
Sbjct: 59881 ggaggaggagaaaggcgagg 59862
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>gb|AC092562.4| Papio hamadryas BAC RP41-285I13 (Rosewell Park Cancer Institute BAC
              Library) complete sequence
          Length = 183586

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 274    ctggggaggaggagaaaggc 293
              ||||||||||||||||||||
Sbjct: 111253 ctggggaggaggagaaaggc 111272
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>ref|XM_694178.1| PREDICTED: Danio rerio similar to Synapsin-1 (Synapsin I)
           (LOC570672), mRNA
          Length = 2460

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 gaggagaagaagccggcgcc 268
           ||||||||||||||||||||
Sbjct: 521 gaggagaagaagccggcgcc 502
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>gb|AC022087.8|AC022087 Homo sapiens chromosome 15 clone CTD-3110H11 map 15q21.1, complete
             sequence
          Length = 117627

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   gccaaatccatctccttctt 139
             ||||||||||||||||||||
Sbjct: 16853 gccaaatccatctccttctt 16834
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>gb|AC151581.2| Pan troglodytes BAC clone RP43-166C19 from chromosome 7, complete
             sequence
          Length = 180623

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   ggctggggaggaggagaaag 291
             ||||||||||||||||||||
Sbjct: 98781 ggctggggaggaggagaaag 98800
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>gb|AC126415.9| Mus musculus chromosome 5, clone RP24-476K21, complete sequence
          Length = 168525

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 179  cctcttctgctcttgctcct 198
            ||||||||||||||||||||
Sbjct: 4459 cctcttctgctcttgctcct 4478
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>gb|AC132572.3| Mus musculus BAC clone RP24-409B13 from chromosome 12, complete sequence
          Length = 131385

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    ggggaggaggagaaaggcga 295
              ||||||||||||||||||||
Sbjct: 112337 ggggaggaggagaaaggcga 112356
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>gb|AC007312.1|AC007312 Homo sapiens clone RP11-349E11 from 7p14-15, complete sequence
          Length = 185652

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   ggctggggaggaggagaaag 291
             ||||||||||||||||||||
Sbjct: 84352 ggctggggaggaggagaaag 84333
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>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0410E01
          Length = 166753

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 262    cggcgcccgcggctggggaggagg 285
              ||||||||||||| ||||||||||
Sbjct: 114029 cggcgcccgcggccggggaggagg 114052
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>dbj|AK120636.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153K01, full
           insert sequence
          Length = 1754

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 262 cggcgcccgcggctggggaggagg 285
           ||||||||||||| ||||||||||
Sbjct: 144 cggcgcccgcggccggggaggagg 121
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>ref|XM_565906.1| Anopheles gambiae str. PEST ENSANGP00000028483
           (ENSANGG00000025142), partial mRNA
          Length = 1185

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 213 gccgtcgtcgcaccggcacc 232
           ||||||||||||||||||||
Sbjct: 714 gccgtcgtcgcaccggcacc 695
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>dbj|D16583.1|HUMLHDC Homo sapiens gene for L-histidine decarboxylase, complete cds
          Length = 32351

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 120  gccaaatccatctccttctt 139
            ||||||||||||||||||||
Sbjct: 9485 gccaaatccatctccttctt 9504
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>emb|AL806521.9| Mouse DNA sequence from clone RP23-385N7 on chromosome 4, complete
              sequence
          Length = 187066

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 100    gagttggctgcaggggcatagcca 123
              |||||||||||||| |||||||||
Sbjct: 165067 gagttggctgcaggagcatagcca 165044


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,140,302
Number of Sequences: 3902068
Number of extensions: 3140302
Number of successful extensions: 75594
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75342
Number of HSP's gapped (non-prelim): 252
length of query: 324
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 302
effective length of database: 17,147,199,772
effective search space: 5178454331144
effective search space used: 5178454331144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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