ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast06f09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|D87064.1| Triticum aestivum gene for histone H1, complete cds, clone:TH315 Length = 3025 Score = 299 bits (151), Expect = 3e-78 Identities = 256/288 (88%), Gaps = 16/288 (5%) Strand = Plus / Plus Query: 9 ctcacccgcatctccctcacctccggcgaaagacacaccagcgcgc-----tcccctcgc 63 ||||| |||||||| ||||| |||||||||| |||||||||||||| ||||||||| Sbjct: 778 ctcacacgcatctctctcac-tccggcgaaa-acacaccagcgcgcccctctcccctcgc 835 Query: 64 tctcccgcagcgatgtcgaccgacgcagc---cgccgacatcccggtgcctcaggtggag 120 | ||||| || |||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 836 ttccccgccgcaatgtcgaccgacgccgctgccgccgacatcccggtgcctcaggtggag 895 Query: 121 gcgaccgccgaccccgtcgtggagaccacggctgacgccgccgccggcgacgcgaaaccg 180 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct: 896 gcgaccgccgaccccgtcgtggagaccacggctgacgcgcccgccggcgacgcgaaggcg 955 Query: 181 gccaaggc------gaccaaggccaaggccgccaagacgcccaaggccaagaagccctcc 234 ||||||| | |||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 956 accaaggctaccaaggccaaggccaaggccgccaagacccccaaggcgaagaagccctcc 1015 Query: 235 gccccgaggaagcccaaggccgcccccgcccacccgacctacgctgag 282 ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1016 gccccgaggaagcccaaggccacccccgcccacccgacctacgctgag 1063 Score = 141 bits (71), Expect = 2e-30 Identities = 95/103 (92%) Strand = Plus / Plus Query: 281 agatggtgtcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccgtcgcca 340 |||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||| Sbjct: 1192 agatggtgacggaggcgatcgccgcgctgaaggagaggaacgggtcgagcaccgtcgcca 1251 Query: 341 tcggcaggttcatcgaggacaagcacaaggcgcacctcccggc 383 ||| || || ||||||||||||||||||||||||||||||||| Sbjct: 1252 tcgccaagtacatcgaggacaagcacaaggcgcacctcccggc 1294
>dbj|D87065.1| Triticum aestivum gene for histone H1, complete cds, clone:TH325 Length = 2541 Score = 283 bits (143), Expect = 2e-73 Identities = 257/293 (87%), Gaps = 24/293 (8%) Strand = Plus / Plus Query: 9 ctcacccgcatctccctcacctccggcgaaagacacaccagcgcgctcc-------cctc 61 ||||| |||||||| ||||| |||||||||| ||||||||||||||||| |||| Sbjct: 778 ctcacacgcatctctctcac-tccggcgaaa-acacaccagcgcgctcctctctcccctc 835 Query: 62 gctctcccgcagcgatgtcgaccgacgcagc---cgccgacatcccggtgcctcaggtgg 118 ||| ||||| || |||||||||||||| || |||||||||||||||||||||||||| Sbjct: 836 gcttccccgccgcaatgtcgaccgacgccgctgccgccgacatcccggtgcctcaggtgg 895 Query: 119 aggcgaccgccgaccccgtcgtggagaccacggctgacgccgccgccggcgacgcgaaac 178 ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| | Sbjct: 896 aggcgaccgccgaccccgtcgcggagaccaccgct---gccgccgccggcgacgcgaagc 952 Query: 179 cggccaaggcgaccaaggccaaggccgccaaga---------cgcccaaggccaagaagc 229 ||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct: 953 cggccaaggcgaccaaggccaaggccgccaagacccccaaggcgcccaaggcgaagaagc 1012 Query: 230 cctccgccccgaggaagcccaaggccgcccccgcccacccgacctacgctgag 282 |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1013 cctccgccccgaggaagcccaaggccacccccgcccacccgacctacgctgag 1065 Score = 172 bits (87), Expect = 5e-40 Identities = 99/103 (96%) Strand = Plus / Plus Query: 281 agatggtgtcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccgtcgcca 340 |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct: 1191 agatggtgtcggaggcgatcaccgcgctgaaggagagaggcgggtcgagcaccgtggcca 1250 Query: 341 tcggcaggttcatcgaggacaagcacaaggcgcacctcccggc 383 |||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1251 tcggcaagttcatcgaggacaagcacaaggcgcacctcccggc 1293
>gb|AF107025.1|AF107025 Triticum aestivum similar to histone H1 mRNA sequence Length = 1082 Score = 266 bits (134), Expect = 5e-68 Identities = 167/178 (93%) Strand = Plus / Plus Query: 206 ccaagacgcccaaggccaagaagccctccgccccgaggaagcccaaggccgcccccgccc 265 ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 21 ccaaggcgcccaaggtgaagaagccctccgccccgaggaagcccaaggccgcccccgccc 80 Query: 266 acccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaaggagaggggcgggt 325 ||||||||||||||||||||||| ||||||||||| |||| || |||||||| ||||||| Sbjct: 81 acccgacctacgctgagatggtggcggaggcgatcgccgccctgaaggagagaggcgggt 140 Query: 326 cgagcaccgtcgccatcggcaggttcatcgaggacaagcacaaggcgcacctcccggc 383 |||||||||||||||||| || || ||||||||||||||||||||||||||||||||| Sbjct: 141 cgagcaccgtcgccatcgccaagtacatcgaggacaagcacaaggcgcacctcccggc 198
>gb|AF107024.1|AF107024 Triticum aestivum histone H1 WH1B.1 mRNA, complete cds Length = 1114 Score = 248 bits (125), Expect = 1e-62 Identities = 264/309 (85%), Gaps = 11/309 (3%) Strand = Plus / Plus Query: 76 atgtcgaccgacgcagccgccgacatcccggtgcctcaggtggaggcgaccgccgacccc 135 |||||||| |||| | |||||| |||||| ||| |||||| |||| ||||||||||| Sbjct: 5 atgtcgactgacgtggtcgccgatgtcccggcccctgaggtggcggcggccgccgacccc 64 Query: 136 gtcgtggagaccacggctgacgccgccgccggcgacgcgaaaccggccaaggcgaccaag 195 ||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||||| Sbjct: 65 gtcgtggagaccacggcagagcccgccgccggcgacgcgaacgcggccaaggagaccaag 124 Query: 196 gccaaggccgccaagacgcccaaggccaagaagccctccgccccgaggaagcccaaggcc 255 || |||| || ||||||||||||||||||||||||||||||||||| ||| Sbjct: 125 gc---------caaggcggccaaggccaagaagccctccgccccgaggaagccccgcgcc 175 Query: 256 gcccccgcccacccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaaggag 315 |||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||| Sbjct: 176 gcccccgcccacccgacctacgctgagatggtttcggaggccatcaccgccctgaaggag 235 Query: 316 aggggcgggtcgagcaccgt-cgccatcggcaggttcatcgaggacaagcacaaggcgca 374 | ||||||||| |||| |||||||| || |||| |||||||||||||||||||||| Sbjct: 236 cgaacggggtcgagc-ccgtacgccatcgccaagttcgtcgaggacaagcacaaggcgca 294 Query: 375 cctcccggc 383 ||||||||| Sbjct: 295 cctcccggc 303
>emb|X59872.2|TAHISTH1 T.aestivum L mRNA for histone H1 Length = 1031 Score = 184 bits (93), Expect = 1e-43 Identities = 165/189 (87%) Strand = Plus / Plus Query: 195 ggccaaggccgccaagacgcccaaggccaagaagccctccgccccgaggaagcccaaggc 254 ||||||||| ||||| || |||||||||||||| || | | ||||| ||||||| | Sbjct: 159 ggccaaggcgcccaaggcggccaaggccaagaagtccactggcccgaagaagccccgcgt 218 Query: 255 cgcccccgcccacccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaagga 314 | |||| ||||||||| ||||||| ||||||||||||||||||||| |||| || ||||| Sbjct: 219 caccccggcccacccgtcctacgccgagatggtgtcggaggcgatcgccgccctgaagga 278 Query: 315 gaggggcgggtcgagcaccgtcgccatcggcaggttcatcgaggacaagcacaaggcgca 374 |||| |||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| Sbjct: 279 gaggagcgggtcgagcaccatcgcgatcggcaagttcatcgaggacaagcacaaggcgca 338 Query: 375 cctcccggc 383 ||||||||| Sbjct: 339 cctcccggc 347 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 91 gccgccgacatcccggtgcctcaggtggagg 121 ||||| ||||||||||||||||||||||||| Sbjct: 88 gccgctgacatcccggtgcctcaggtggagg 118
>gb|AF107022.1|AF107022 Triticum aestivum histone H1 WH1A.1 mRNA, complete cds Length = 1050 Score = 182 bits (92), Expect = 6e-43 Identities = 164/188 (87%) Strand = Plus / Plus Query: 196 gccaaggccgccaagacgcccaaggccaagaagccctccgccccgaggaagcccaaggcc 255 |||||||| ||||| || |||||||||||||| || | | ||||| ||||||| | | Sbjct: 134 gccaaggcgcccaaggcggccaaggccaagaagtccactggcccgaagaagccccgcgtc 193 Query: 256 gcccccgcccacccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaaggag 315 |||| ||||||||| ||||||| ||||||||||||||||||||| |||| || |||||| Sbjct: 194 accccggcccacccgtcctacgccgagatggtgtcggaggcgatcgccgccctgaaggag 253 Query: 316 aggggcgggtcgagcaccgtcgccatcggcaggttcatcgaggacaagcacaaggcgcac 375 ||| |||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| Sbjct: 254 aggagcgggtcgagcaccatcgcgatcggcaagttcatcgaggacaagcacaaggcgcac 313 Query: 376 ctcccggc 383 |||||||| Sbjct: 314 ctcccggc 321 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 91 gccgccgacatcccggtgcctcaggtggagg 121 ||||| ||||||||||||||||||||||||| Sbjct: 65 gccgctgacatcccggtgcctcaggtggagg 95
>gb|AF107027.1|AF107027 Triticum aestivum histone H1 WH1A.4 mRNA, complete cds Length = 975 Score = 176 bits (89), Expect = 3e-41 Identities = 164/189 (86%) Strand = Plus / Plus Query: 195 ggccaaggccgccaagacgcccaaggccaagaagccctccgccccgaggaagcccaaggc 254 ||||||||| ||||| || |||||||||||||| || | | ||||| ||||||| | Sbjct: 116 ggccaaggcgcccaaggcggccaaggccaagaagtccactggcccgaagaagccccgcgt 175 Query: 255 cgcccccgcccacccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaagga 314 | |||| ||||||||| ||||||| ||||||||||||||||||||| |||| || ||||| Sbjct: 176 caccccggcccacccgtcctacgccgagatggtgtcggaggcgatcgccgccctgaagga 235 Query: 315 gaggggcgggtcgagcaccgtcgccatcggcaggttcatcgaggacaagcacaaggcgca 374 |||| |||||||||||||| |||| ||||||| ||||||||||||||||||| ||||||| Sbjct: 236 gaggagcgggtcgagcaccatcgcgatcggcaagttcatcgaggacaagcacgaggcgca 295 Query: 375 cctcccggc 383 ||||||||| Sbjct: 296 cctcccggc 304 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Plus Query: 97 gacatcccggtgcctcaggtggagg 121 ||||||||||||||||||||||||| Sbjct: 51 gacatcccggtgcctcaggtggagg 75
>gb|AF107023.1|AF107023 Triticum aestivum histone H1 WH1A.2 mRNA, complete cds Length = 1019 Score = 176 bits (89), Expect = 3e-41 Identities = 164/189 (86%) Strand = Plus / Plus Query: 195 ggccaaggccgccaagacgcccaaggccaagaagccctccgccccgaggaagcccaaggc 254 ||||||||| ||||| || |||||||||||||| || | | ||||| ||||||| | Sbjct: 125 ggccaaggcgcccaaggcggccaaggccaagaagtccactggcccgaagaagccccgcgt 184 Query: 255 cgcccccgcccacccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaagga 314 | |||| ||||||||| ||||||| ||||||||||||||||||||| |||| || ||||| Sbjct: 185 caccccggcccacccgtcctacgccgagatggtgtcggaggcgatcgccgccctgaagga 244 Query: 315 gaggggcgggtcgagcaccgtcgccatcggcaggttcatcgaggacaagcacaaggcgca 374 |||| |||||||||||||| |||| ||||||| |||||||||||| |||||||||||||| Sbjct: 245 gaggagcgggtcgagcaccatcgcgatcggcaagttcatcgaggataagcacaaggcgca 304 Query: 375 cctcccggc 383 ||||||||| Sbjct: 305 cctcccggc 313 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Plus Query: 97 gacatcccggtgcctcaggtggagg 121 ||||||||||||||||||||||||| Sbjct: 60 gacatcccggtgcctcaggtggagg 84
>gb|AF107026.1|AF107026 Triticum aestivum histone H1 WH1A.3 mRNA, partial cds Length = 952 Score = 167 bits (84), Expect = 3e-38 Identities = 162/188 (86%) Strand = Plus / Plus Query: 196 gccaaggccgccaagacgcccaaggccaagaagccctccgccccgaggaagcccaaggcc 255 |||||||| ||||| || |||||||||||||| || | | ||||| ||||||| | | Sbjct: 59 gccaaggcgcccaaggcggccaaggccaagaagtccactggcccgaagaagccccgcgtc 118 Query: 256 gcccccgcccacccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaaggag 315 |||| ||||||||| ||||||| ||||||||||||||||||||| |||| || |||||| Sbjct: 119 accccggcccacccgtcctacgccgagatggtgtcggaggcgatcgccgccctgaaggag 178 Query: 316 aggggcgggtcgagcaccgtcgccatcggcaggttcatcgaggacaagcacaaggcgcac 375 ||| |||||||||||||| |||| |||| | |||||||||||||||||||||||||||| Sbjct: 179 aggagcgggtcgagcaccatcgcgatcgcaaagttcatcgaggacaagcacaaggcgcac 238 Query: 376 ctcccggc 383 |||||||| Sbjct: 239 ctcccggc 246 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 cccggtgcctcaggtggagg 121 |||||||||||||||||||| Sbjct: 1 cccggtgcctcaggtggagg 20
>ref|NM_185048.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1371 Score = 65.9 bits (33), Expect = 9e-08 Identities = 128/157 (81%), Gaps = 2/157 (1%) Strand = Plus / Plus Query: 215 ccaaggccaagaagccctccgccccgaggaagcccaaggccgcccccgcccacccgacct 274 |||||||||||||| || |||| ||||||||| | || || || |||||||| | | Sbjct: 207 ccaaggccaagaaggccgccgcgccgaggaaggcacgctccaccgccacccacccgccgt 266 Query: 275 acgctgagatggtgtcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccg 334 |||| |||||| | |||||||||||| | |||| ||||||||| |||||||||| | | Sbjct: 267 acgccgagatgatctcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc-cag 325 Query: 335 t-cgccatcggcaggttcatcgaggacaagcacaagg 370 | ||| ||||||| |||| |||||||||||||||||| Sbjct: 326 tacgcgatcggcaagttcctcgaggacaagcacaagg 362
>gb|BT016684.1| Zea mays clone Contig517 mRNA sequence Length = 1070 Score = 65.9 bits (33), Expect = 9e-08 Identities = 90/109 (82%) Strand = Plus / Plus Query: 263 cccacccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaaggagaggggcg 322 |||||||| | ||||| |||||||| |||||||||||||| |||||||||||||| | Sbjct: 233 cccacccgccgtacgccgagatggtctcggaggcgatcacgtcgctcaaggagaggacgg 292 Query: 323 ggtcgagcaccgtcgccatcggcaggttcatcgaggacaagcacaaggc 371 |||| |||| | ||| || | || |||| | ||||||||||||||||| Sbjct: 293 ggtccagcagctacgcgattgccaagttcgtggaggacaagcacaaggc 341
>dbj|AK099211.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072E13, full insert sequence Length = 1328 Score = 65.9 bits (33), Expect = 9e-08 Identities = 128/157 (81%), Gaps = 2/157 (1%) Strand = Plus / Plus Query: 215 ccaaggccaagaagccctccgccccgaggaagcccaaggccgcccccgcccacccgacct 274 |||||||||||||| || |||| ||||||||| | || || || |||||||| | | Sbjct: 222 ccaaggccaagaaggccgccgcgccgaggaaggcacgctccaccgccacccacccgccgt 281 Query: 275 acgctgagatggtgtcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccg 334 |||| |||||| | |||||||||||| | |||| ||||||||| |||||||||| | | Sbjct: 282 acgccgagatgatctcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc-cag 340 Query: 335 t-cgccatcggcaggttcatcgaggacaagcacaagg 370 | ||| ||||||| |||| |||||||||||||||||| Sbjct: 341 tacgcgatcggcaagttcctcgaggacaagcacaagg 377
>dbj|AK067840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128M09, full insert sequence Length = 1389 Score = 65.9 bits (33), Expect = 9e-08 Identities = 128/157 (81%), Gaps = 2/157 (1%) Strand = Plus / Plus Query: 215 ccaaggccaagaagccctccgccccgaggaagcccaaggccgcccccgcccacccgacct 274 |||||||||||||| || |||| ||||||||| | || || || |||||||| | | Sbjct: 222 ccaaggccaagaaggccgccgcgccgaggaaggcacgctccaccgccacccacccgccgt 281 Query: 275 acgctgagatggtgtcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccg 334 |||| |||||| | |||||||||||| | |||| ||||||||| |||||||||| | | Sbjct: 282 acgccgagatgatctcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc-cag 340 Query: 335 t-cgccatcggcaggttcatcgaggacaagcacaagg 370 | ||| ||||||| |||| |||||||||||||||||| Sbjct: 341 tacgcgatcggcaagttcctcgaggacaagcacaagg 377
>gb|AY103607.1| Zea mays PCO078239 mRNA sequence Length = 1228 Score = 63.9 bits (32), Expect = 4e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 263 cccacccgacctacgctgagatggtgtcggaggcgatcaccgcgctcaaggagagg 318 |||||||| | ||||| |||||||| |||||||||||||| |||||||||||||| Sbjct: 234 cccacccgccgtacgccgagatggtctcggaggcgatcacgtcgctcaaggagagg 289
>emb|X57077.1|ZMH1HIS Maize H1 mRNA for H1 histone Length = 1075 Score = 60.0 bits (30), Expect = 6e-06 Identities = 81/98 (82%) Strand = Plus / Plus Query: 274 tacgctgagatggtgtcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcacc 333 ||||| |||||||| |||||||||||||| |||||||||||||| ||||| |||| | Sbjct: 176 tacgccgagatggtctcggaggcgatcacgtcgctcaaggagaggacggggtccagcagc 235 Query: 334 gtcgccatcggcaggttcatcgaggacaagcacaaggc 371 ||| || | || |||| | ||||||||||||||||| Sbjct: 236 tacgcgattgccaagttcgtggaggacaagcacaaggc 273
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 3e-04 Identities = 71/83 (85%), Gaps = 2/83 (2%) Strand = Plus / Plus Query: 289 tcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccgt-cgccatcggcag 347 |||||||||||| | |||| ||||||||| |||||||||| | || ||| ||||||| Sbjct: 33000947 tcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc-cagtacgcgatcggcaa 33001005 Query: 348 gttcatcgaggacaagcacaagg 370 |||| |||||||||||||||||| Sbjct: 33001006 gttcctcgaggacaagcacaagg 33001028 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 215 ccaaggccaagaagccctccgccccgaggaag 246 |||||||||||||| || |||| ||||||||| Sbjct: 33000793 ccaaggccaagaaggccgccgcgccgaggaag 33000824
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 3e-04 Identities = 71/83 (85%), Gaps = 2/83 (2%) Strand = Plus / Plus Query: 289 tcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccgt-cgccatcggcag 347 |||||||||||| | |||| ||||||||| |||||||||| | || ||| ||||||| Sbjct: 33091457 tcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc-cagtacgcgatcggcaa 33091515 Query: 348 gttcatcgaggacaagcacaagg 370 |||| |||||||||||||||||| Sbjct: 33091516 gttcctcgaggacaagcacaagg 33091538 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 215 ccaaggccaagaagccctccgccccgaggaag 246 |||||||||||||| || |||| ||||||||| Sbjct: 33091303 ccaaggccaagaaggccgccgcgccgaggaag 33091334
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 54.0 bits (27), Expect = 3e-04 Identities = 71/83 (85%), Gaps = 2/83 (2%) Strand = Plus / Minus Query: 289 tcggaggcgatcaccgcgctcaaggagaggggcgggtcgagcaccgt-cgccatcggcag 347 |||||||||||| | |||| ||||||||| |||||||||| | || ||| ||||||| Sbjct: 122361 tcggaggcgatcgcgacgctgaaggagaggaccgggtcgagc-cagtacgcgatcggcaa 122303 Query: 348 gttcatcgaggacaagcacaagg 370 |||| |||||||||||||||||| Sbjct: 122302 gttcctcgaggacaagcacaagg 122280 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 215 ccaaggccaagaagccctccgccccgaggaag 246 |||||||||||||| || |||| ||||||||| Sbjct: 122515 ccaaggccaagaaggccgccgcgccgaggaag 122484
>gb|BT018112.1| Zea mays clone EL01N0553G06.c mRNA sequence Length = 1005 Score = 50.1 bits (25), Expect = 0.005 Identities = 40/45 (88%) Strand = Plus / Plus Query: 274 tacgctgagatggtgtcggaggcgatcaccgcgctcaaggagagg 318 ||||| |||||||| |||||||||||| | |||||||||||||| Sbjct: 237 tacgccgagatggtctcggaggcgatcgcgtcgctcaaggagagg 281
>gb|AF315800.1|AF315800 Homo sapiens chromosome 11 AHCP pseudogene, complete sequence Length = 5386 Score = 46.1 bits (23), Expect = 0.083 Identities = 23/23 (100%) Strand = Plus / Plus Query: 237 cccgaggaagcccaaggccgccc 259 ||||||||||||||||||||||| Sbjct: 752 cccgaggaagcccaaggccgccc 774
>gb|AC022882.5|AC022882 Homo sapiens chromosome 11, clone RP11-444K7, complete sequence Length = 174469 Score = 46.1 bits (23), Expect = 0.083 Identities = 23/23 (100%) Strand = Plus / Minus Query: 237 cccgaggaagcccaaggccgccc 259 ||||||||||||||||||||||| Sbjct: 143225 cccgaggaagcccaaggccgccc 143203
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 180 ggccaaggcgaccaaggccaag 201 |||||||||||||||||||||| Sbjct: 2404461 ggccaaggcgaccaaggccaag 2404482
>ref|XM_478655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2655 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 154 gacgccgccgccggcgacgcga 175 |||||||||||||||||||||| Sbjct: 1580 gacgccgccgccggcgacgcga 1559
>ref|XM_475081.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 522 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 178 ccggccaaggcgaccaaggccaaggccgccaagacgcccaag 219 |||||||||||| |||||| ||| ||||||||| | |||||| Sbjct: 463 ccggccaaggcgtccaaggacaaagccgccaagtcccccaag 504
>gb|AY325530.1| Uncultured bacterium clone GA1 putative dissimilatory membrane-bound nitrate reductase (narG) gene, partial cds Length = 655 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 160 gccgccggcgacgcgaaaccgg 181 |||||||||||||||||||||| Sbjct: 505 gccgccggcgacgcgaaaccgg 526
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 44.1 bits (22), Expect = 0.33 Identities = 28/30 (93%) Strand = Plus / Minus Query: 181 gccaaggcgaccaaggccaaggccgccaag 210 |||||||| |||||||| |||||||||||| Sbjct: 1156545 gccaaggccaccaaggcgaaggccgccaag 1156516
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 190 accaaggccaaggccgccaaga 211 |||||||||||||||||||||| Sbjct: 234945 accaaggccaaggccgccaaga 234966 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 287 tgtcggaggcgatcaccgcgc 307 ||||||||||||||||||||| Sbjct: 308181 tgtcggaggcgatcaccgcgc 308161
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17, complete sequence Length = 129498 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 148 acggctgacgccgccgccggcgacgc 173 ||||||||||||||||||| |||||| Sbjct: 75639 acggctgacgccgccgccgccgacgc 75614
>gb|AY641409.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra2, complete sequence Length = 8027 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 48 agcgcgctcccctcgctctccc 69 |||||||||||||||||||||| Sbjct: 4665 agcgcgctcccctcgctctccc 4686
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 148 acggctgacgccgccgccggcgacgc 173 ||||||||||||||||||| |||||| Sbjct: 24078660 acggctgacgccgccgccgccgacgc 24078635
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 154 gacgccgccgccggcgacgcga 175 |||||||||||||||||||||| Sbjct: 21849139 gacgccgccgccggcgacgcga 21849160 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 aagcccaaggccgcccccgcc 264 ||||||||||||||||||||| Sbjct: 4516310 aagcccaaggccgcccccgcc 4516330
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 178 ccggccaaggcgaccaaggccaaggccgccaagacgcccaag 219 |||||||||||| |||||| ||| ||||||||| | |||||| Sbjct: 707426 ccggccaaggcgtccaaggacaaagccgccaagtcccccaag 707467
>dbj|AK074018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075N03, full insert sequence Length = 797 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 178 ccggccaaggcgaccaaggccaaggccgccaagacgcccaag 219 |||||||||||| |||||| ||| ||||||||| | |||||| Sbjct: 489 ccggccaaggcgtccaaggacaaagccgccaagtcccccaag 530
>dbj|AK064801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D08, full insert sequence Length = 1032 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 148 acggctgacgccgccgccggcgacgc 173 ||||||||||||||||||| |||||| Sbjct: 637 acggctgacgccgccgccgccgacgc 662
>dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0041B22 Length = 142446 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 154 gacgccgccgccggcgacgcga 175 |||||||||||||||||||||| Sbjct: 62815 gacgccgccgccggcgacgcga 62836
>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete sequence Length = 90767 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Minus Query: 148 acggctgacgccgccgccggcgacgc 173 ||||||||||||||||||| |||||| Sbjct: 70727 acggctgacgccgccgccgccgacgc 70702
>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0041A22, complete sequence Length = 117919 Score = 44.1 bits (22), Expect = 0.33 Identities = 37/42 (88%) Strand = Plus / Plus Query: 178 ccggccaaggcgaccaaggccaaggccgccaagacgcccaag 219 |||||||||||| |||||| ||| ||||||||| | |||||| Sbjct: 52625 ccggccaaggcgtccaaggacaaagccgccaagtcccccaag 52666
>ref|XM_476900.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1174 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 aagcccaaggccgcccccgcc 264 ||||||||||||||||||||| Sbjct: 576 aagcccaaggccgcccccgcc 596
>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16 Length = 349442 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 agcaccgtcgccatcggcagg 348 ||||||||||||||||||||| Sbjct: 313102 agcaccgtcgccatcggcagg 313082
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14 Length = 346301 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 agcaccgtcgccatcggcagg 348 ||||||||||||||||||||| Sbjct: 281603 agcaccgtcgccatcggcagg 281583
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 ccaaggccaaggccgccaaga 211 ||||||||||||||||||||| Sbjct: 674712 ccaaggccaaggccgccaaga 674732
>gb|AF394115.1|AF394115 Fritillaria liliacea clone 1GA-4 histone-like protein gene, partial cds Length = 827 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 172 gcgaaaccggccaaggcgaccaaggccaaggcc 204 ||||| |||||||||| ||| |||||||||||| Sbjct: 43 gcgaagccggccaaggtgacgaaggccaaggcc 75
>gb|AF394114.1|AF394114 Fritillaria liliacea clone 1GA-3 histone-like protein gene, partial cds Length = 827 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 172 gcgaaaccggccaaggcgaccaaggccaaggcc 204 ||||| |||||||||| ||| |||||||||||| Sbjct: 43 gcgaagccggccaaggtgacgaaggccaaggcc 75
>gb|AF394113.1|AF394113 Fritillaria liliacea clone 1GA-2 histone-like protein gene, partial cds Length = 827 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 172 gcgaaaccggccaaggcgaccaaggccaaggcc 204 ||||| |||||||||| ||| |||||||||||| Sbjct: 43 gcgaagccggccaaggtgacgaaggccaaggcc 75
>gb|AF394112.1|AF394112 Fritillaria liliacea clone 1GA-1 histone-like protein gene, partial cds Length = 827 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 172 gcgaaaccggccaaggcgaccaaggccaaggcc 204 ||||| |||||||||| ||| |||||||||||| Sbjct: 43 gcgaagccggccaaggtgacgaaggccaaggcc 75
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 gacgccgccgccggcgacgcg 174 ||||||||||||||||||||| Sbjct: 20910779 gacgccgccgccggcgacgcg 20910799
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 197 ccaaggccgccaagacgcccaaggc 221 |||||||||||||| |||||||||| Sbjct: 2170881 ccaaggccgccaaggcgcccaaggc 2170857
>dbj|AP003861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1046_F10 Length = 118472 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 aagcccaaggccgcccccgcc 264 ||||||||||||||||||||| Sbjct: 95029 aagcccaaggccgcccccgcc 95049
>ref|XM_309316.2| Anopheles gambiae str. PEST ENSANGP00000025395 (ENSANGG00000006187), partial mRNA Length = 4845 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 321 cgggtcgagcaccgtcgccatcggc 345 |||||||||||| |||||||||||| Sbjct: 942 cgggtcgagcacggtcgccatcggc 918
>dbj|AK106132.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F12, full insert sequence Length = 1174 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 aagcccaaggccgcccccgcc 264 ||||||||||||||||||||| Sbjct: 576 aagcccaaggccgcccccgcc 596
>dbj|AK102642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033100F04, full insert sequence Length = 1175 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 aagcccaaggccgcccccgcc 264 ||||||||||||||||||||| Sbjct: 577 aagcccaaggccgcccccgcc 597
>dbj|AK099050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013148D20, full insert sequence Length = 1175 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 aagcccaaggccgcccccgcc 264 ||||||||||||||||||||| Sbjct: 577 aagcccaaggccgcccccgcc 597
>dbj|AK059544.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F03, full insert sequence Length = 1177 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 aagcccaaggccgcccccgcc 264 ||||||||||||||||||||| Sbjct: 579 aagcccaaggccgcccccgcc 599
>gb|AF099746.1|AF099746 Petromyzon marinus Otx mRNA, complete cds Length = 2456 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 146 ccacggctgacgccgccgccg 166 ||||||||||||||||||||| Sbjct: 1308 ccacggctgacgccgccgccg 1328
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 gacgccgccgccggcgacgcg 174 ||||||||||||||||||||| Sbjct: 20836993 gacgccgccgccggcgacgcg 20837013
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 tgacgccgccgccggcgacgc 173 ||||||||||||||||||||| Sbjct: 6894956 tgacgccgccgccggcgacgc 6894976
>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 107819 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 gacgccgccgccggcgacgcg 174 ||||||||||||||||||||| Sbjct: 48216 gacgccgccgccggcgacgcg 48196
>gb|AF527615.1| Zea mays histone H1-like protein HON101 (hon101) mRNA, complete cds Length = 780 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 291 ggaggcgatcaccgcgctcaaggagagg 318 |||||| ||||| ||||||||||||||| Sbjct: 215 ggaggctatcacggcgctcaaggagagg 242
>ref|XM_367399.1| Magnaporthe grisea 70-15 hypothetical protein (MG07324.4) partial mRNA Length = 702 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 agacgcccaaggccaagaag 228 |||||||||||||||||||| Sbjct: 677 agacgcccaaggccaagaag 696
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 tggaggcgaccgccgaccccgtcg 139 ||||||||||||||||| |||||| Sbjct: 571059 tggaggcgaccgccgacgccgtcg 571036
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 gtcggaggcgatcaccgcgc 307 |||||||||||||||||||| Sbjct: 4334445 gtcggaggcgatcaccgcgc 4334426 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 cccgcagcgatgtcgaccga 86 |||||||||||||||||||| Sbjct: 2598535 cccgcagcgatgtcgaccga 2598516 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 gtcggaggcgatcaccgcgc 307 |||||||||||||||||||| Sbjct: 1105481 gtcggaggcgatcaccgcgc 1105500
>gb|AE005742.1| Caulobacter crescentus CB15 section 68 of 359 of the complete genome Length = 12842 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ccaaggccaaggccgccaag 210 |||||||||||||||||||| Sbjct: 1622 ccaaggccaaggccgccaag 1603
>gb|AE012093.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 1 of 460 of the complete genome Length = 10511 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 201 ggccgccaagacgcccaaggccaagaag 228 |||||||||||||||||| | ||||||| Sbjct: 9931 ggccgccaagacgcccaacgacaagaag 9958
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 caaggccaaggccgccaaga 211 |||||||||||||||||||| Sbjct: 495144 caaggccaaggccgccaaga 495125
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ccaaggccaaggccgccaag 210 |||||||||||||||||||| Sbjct: 2803702 ccaaggccaaggccgccaag 2803721
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 cggcaggttcatcgaggacaagca 365 |||||||||||||||||| ||||| Sbjct: 2604284 cggcaggttcatcgaggagaagca 2604307
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 201 ggccgccaagacgcccaaggccaagaag 228 |||||||||||||||||| | ||||||| Sbjct: 9931 ggccgccaagacgcccaacgacaagaag 9958
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 gtcggaggcgatcaccgcgc 307 |||||||||||||||||||| Sbjct: 994618 gtcggaggcgatcaccgcgc 994637
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 ctgacgccgccgccggcgac 171 |||||||||||||||||||| Sbjct: 5647823 ctgacgccgccgccggcgac 5647842
>gb|AF527951.1| Xanthomonas campestris pv. campestris conserved hypothetical protein (orf268), conserved hypothetical protein (orf398), TonB (tonB), ExbB (exbB), ExbD1 (exbD1), and ExbD2 (exbD2) genes, complete cds Length = 4981 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 201 ggccgccaagacgcccaaggccaagaag 228 |||||||||||||||||| | ||||||| Sbjct: 1797 ggccgccaagacgcccaacgacaagaag 1824
>gb|AC139530.3| Homo sapiens chromosome 17, clone RP13-1032I1, complete sequence Length = 159125 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 cagccgccgacatcccggtgcctc 112 ||||||||||| |||||||||||| Sbjct: 92612 cagccgccgacgtcccggtgcctc 92589
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 179 cggccaaggcgaccaaggccaaggccgccaagacgcccaaggcc 222 |||||| |||| ||||||||| ||| ||||| ||||||||||| Sbjct: 2482592 cggccacggcgtccaaggccagggcgtccaaggcgcccaaggcc 2482549 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 tgacgccgccgccggcgacg 172 |||||||||||||||||||| Sbjct: 2470338 tgacgccgccgccggcgacg 2470357
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 agcaccgtcgccatcggcag 347 |||||||||||||||||||| Sbjct: 3256030 agcaccgtcgccatcggcag 3256049
>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0021C04 Length = 162115 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 ctgacgccgccgccggcgac 171 |||||||||||||||||||| Sbjct: 39970 ctgacgccgccgccggcgac 39989
>gb|AE005040.1| Halobacterium sp. NRC-1 section 71 of 170 of the complete genome Length = 10881 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 gcgaccgccgaccccgtcgt 140 |||||||||||||||||||| Sbjct: 7444 gcgaccgccgaccccgtcgt 7425
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 ggctgacgccgccgccggcg 169 |||||||||||||||||||| Sbjct: 136448 ggctgacgccgccgccggcg 136467
>gb|AY849653.1| Magnaporthe grisea microsomal signal peptidase-like protein mRNA, complete cds Length = 1061 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 agacgcccaaggccaagaag 228 |||||||||||||||||||| Sbjct: 806 agacgcccaaggccaagaag 825
>gb|AY104249.1| Zea mays PCO063043 mRNA sequence Length = 942 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 291 ggaggcgatcaccgcgctcaaggagagg 318 |||||| ||||| ||||||||||||||| Sbjct: 229 ggaggctatcacggcgctcaaggagagg 256
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 328 agcaccgtcgccatcggcaggttcatcgagga 359 |||| ||||| |||||||| |||||||||||| Sbjct: 2343088 agcaacgtcggcatcggcaagttcatcgagga 2343119
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ggtggaggcgaccgccgacc 133 |||||||||||||||||||| Sbjct: 1411771 ggtggaggcgaccgccgacc 1411790
>gb|L43630.1|LEISA2R Leishmania major surface antigen 2 mRNA, complete cds Length = 1186 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 catcgaggacaagcacaagg 370 |||||||||||||||||||| Sbjct: 733 catcgaggacaagcacaagg 752
>emb|X56810.1|LMSAP264 L.major mRNA for surface antigen P2 (clone 6.4) Length = 2529 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 catcgaggacaagcacaagg 370 |||||||||||||||||||| Sbjct: 249 catcgaggacaagcacaagg 268
>emb|X57009.1|LMTR1 L.major tr-1 gene for surface antigen P2 Length = 1360 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 catcgaggacaagcacaagg 370 |||||||||||||||||||| Sbjct: 907 catcgaggacaagcacaagg 926 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,653,256 Number of Sequences: 3902068 Number of extensions: 2653256 Number of successful extensions: 68701 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65496 Number of HSP's gapped (non-prelim): 3188 length of query: 383 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 361 effective length of database: 17,147,199,772 effective search space: 6190139117692 effective search space used: 6190139117692 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
