ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast06e04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475315.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 411 Score = 77.8 bits (39), Expect = 7e-12 Identities = 49/51 (96%), Gaps = 1/51 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccg 120 |||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 1 atggcccgcacgaagcagacggcgaggaagtccaccggcggcaaggcgccg 51
>ref|XM_472456.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 411 Score = 77.8 bits (39), Expect = 7e-12 Identities = 52/55 (94%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccgcgga 124 ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct: 1 atggcgcgcacgaagcagacggcgaggaagtcgaccggcgggaaggcgcctcgga 55
>gb|BT016934.1| Zea mays clone E04912703G10.c mRNA sequence Length = 663 Score = 77.8 bits (39), Expect = 7e-12 Identities = 52/55 (94%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccgcgga 124 |||||||||||||||||||||||| | |||||||||||||| ||||||||||||| Sbjct: 560 atggcccgcacgaagcagacggcgcgcaagtcgaccggcggcaaggcgccgcgga 506
>gb|AC134930.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0042J17, complete sequence Length = 124139 Score = 77.8 bits (39), Expect = 7e-12 Identities = 49/51 (96%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccg 120 |||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 73171 atggcccgcacgaagcagacggcgaggaagtccaccggcggcaaggcgccg 73121
>emb|X00937.1|TAHI02 Wheat histone H3 gene Length = 811 Score = 77.8 bits (39), Expect = 7e-12 Identities = 49/51 (96%), Gaps = 1/51 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccg 120 ||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 248 atggcccgcaccaagcagacggcgaggaagtcgaccggcggcaaggcgccg 298
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 77.8 bits (39), Expect = 7e-12 Identities = 52/55 (94%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccgcgga 124 ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct: 20748653 atggcgcgcacgaagcagacggcgaggaagtcgaccggcgggaaggcgcctcgga 20748707
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 77.8 bits (39), Expect = 7e-12 Identities = 49/51 (96%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccg 120 |||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 21355849 atggcccgcacgaagcagacggcgaggaagtccaccggcggcaaggcgccg 21355799
>dbj|AK120955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039F20, full insert sequence Length = 735 Score = 77.8 bits (39), Expect = 7e-12 Identities = 49/51 (96%), Gaps = 1/51 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccg 120 |||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 86 atggcccgcacgaagcagacggcgaggaagtccaccggcggcaaggcgccg 136
>emb|AL606618.4|OSJN00062 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0108J11, complete sequence Length = 124629 Score = 77.8 bits (39), Expect = 7e-12 Identities = 52/55 (94%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccgcgga 124 ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct: 94804 atggcgcgcacgaagcagacggcgaggaagtcgaccggcgggaaggcgcctcgga 94858
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 75.8 bits (38), Expect = 3e-11 Identities = 51/54 (94%), Gaps = 1/54 (1%) Strand = Plus / Plus Query: 68 ccgatggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccg 120 |||||||||||||| |||||||||||||||||||| |||||||| ||||||||| Sbjct: 37507153 ccgatggcccgcaccaagcagacggcgaggaagtccaccggcggcaaggcgccg 37507206
>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0505D12 Length = 146951 Score = 75.8 bits (38), Expect = 3e-11 Identities = 51/54 (94%), Gaps = 1/54 (1%) Strand = Plus / Plus Query: 68 ccgatggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccg 120 |||||||||||||| |||||||||||||||||||| |||||||| ||||||||| Sbjct: 101690 ccgatggcccgcaccaagcagacggcgaggaagtccaccggcggcaaggcgccg 101743
>dbj|AK108078.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E03, full insert sequence Length = 1296 Score = 75.8 bits (38), Expect = 3e-11 Identities = 51/54 (94%), Gaps = 1/54 (1%) Strand = Plus / Plus Query: 68 ccgatggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccg 120 |||||||||||||| |||||||||||||||||||| |||||||| ||||||||| Sbjct: 76 ccgatggcccgcaccaagcagacggcgaggaagtccaccggcggcaaggcgccg 129
>gb|BT018930.1| Zea mays clone Contig60.F mRNA sequence Length = 887 Score = 73.8 bits (37), Expect = 1e-10 Identities = 53/57 (92%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccgcgga 124 |||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||| Sbjct: 634 cgatggcccgcacgaagcagacggcgcgcaagtcgacgggcggcaaggcgccgcgga 578
>gb|AC134048.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0076K20, complete sequence Length = 127338 Score = 73.8 bits (37), Expect = 1e-10 Identities = 50/53 (94%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 ||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 117766 cgatggcccgcacgaagcagacggctcggaagtcgaccggcgggaaggcgccg 117818
>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence Length = 123477 Score = 73.8 bits (37), Expect = 1e-10 Identities = 50/53 (94%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 ||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 13372 cgatggcccgcacgaagcagacggctcggaagtcgaccggcgggaaggcgccg 13424
>emb|X13680.1|OSHIS321 Oryza sativa H3 histone H3R-21 clone RH3-2 Length = 1200 Score = 73.8 bits (37), Expect = 1e-10 Identities = 50/53 (94%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 ||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 399 cgatggcccgcacgaagcagacggctcggaagtcgaccggcgggaaggcgccg 451
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 73.8 bits (37), Expect = 1e-10 Identities = 50/53 (94%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 ||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 2609032 cgatggcccgcacgaagcagacggctcggaagtcgaccggcgggaaggcgccg 2608980
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 73.8 bits (37), Expect = 1e-10 Identities = 50/53 (94%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 ||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 2618063 cgatggcccgcacgaagcagacggctcggaagtcgaccggcgggaaggcgccg 2618011
>gb|U77296.1|OSU77296 Oryza sativa histone 3 mRNA, complete cds Length = 642 Score = 73.8 bits (37), Expect = 1e-10 Identities = 50/53 (94%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 ||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 70 cgatggcccgcacgaagcagacggctcggaagtcgaccggcgggaaggcgccg 122
>emb|X84377.1|ZMHIS3DNA Z.mays histone H3 gene Length = 1119 Score = 73.8 bits (37), Expect = 1e-10 Identities = 53/57 (92%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccgcgga 124 |||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||| Sbjct: 383 cgatggcccgcacgaagcagacggcgcgcaagtcgacgggcggcaaggcgccgcgga 439
>ref|NM_190750.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 411 Score = 69.9 bits (35), Expect = 2e-09 Identities = 48/51 (94%), Gaps = 1/51 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccg 120 ||||||||||| |||||||||||||||||||| |||||||| ||||||||| Sbjct: 1 atggcccgcaccaagcagacggcgaggaagtccaccggcggcaaggcgccg 51
>emb|X13678.1|OSHIS311 Oryza sativa H3 histone gene H3R-11 Length = 1200 Score = 65.9 bits (33), Expect = 3e-08 Identities = 49/53 (92%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 |||||||||||||||||||||||||| | ||||| |||||| ||||||||||| Sbjct: 399 cgatggcccgcacgaagcagacggcgcgcaagtccaccggcgggaaggcgccg 451
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 65.9 bits (33), Expect = 3e-08 Identities = 49/53 (92%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 |||||||||||||||||||||||||| | ||||| |||||| ||||||||||| Sbjct: 3055161 cgatggcccgcacgaagcagacggcgcgcaagtccaccggcgggaaggcgccg 3055213 Score = 65.9 bits (33), Expect = 3e-08 Identities = 49/53 (92%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 |||||||||||||||||||||||||| | ||||| |||||| ||||||||||| Sbjct: 3054616 cgatggcccgcacgaagcagacggcgcgcaagtccaccggcgggaaggcgccg 3054564 Score = 65.9 bits (33), Expect = 3e-08 Identities = 49/53 (92%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 |||||||||||||||||||||||||| | ||||| |||||| ||||||||||| Sbjct: 3039939 cgatggcccgcacgaagcagacggcgcgcaagtccaccggcgggaaggcgccg 3039887 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 cccgcacgaagcagacggcg 94 |||||||||||||||||||| Sbjct: 3045953 cccgcacgaagcagacggcg 3045934
>dbj|AP005828.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0702F05 Length = 145018 Score = 65.9 bits (33), Expect = 3e-08 Identities = 49/53 (92%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 |||||||||||||||||||||||||| | ||||| |||||| ||||||||||| Sbjct: 143110 cgatggcccgcacgaagcagacggcgcgcaagtccaccggcgggaaggcgccg 143162 Score = 65.9 bits (33), Expect = 3e-08 Identities = 49/53 (92%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 |||||||||||||||||||||||||| | ||||| |||||| ||||||||||| Sbjct: 142565 cgatggcccgcacgaagcagacggcgcgcaagtccaccggcgggaaggcgccg 142513 Score = 65.9 bits (33), Expect = 3e-08 Identities = 49/53 (92%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 |||||||||||||||||||||||||| | ||||| |||||| ||||||||||| Sbjct: 127888 cgatggcccgcacgaagcagacggcgcgcaagtccaccggcgggaaggcgccg 127836 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 cccgcacgaagcagacggcg 94 |||||||||||||||||||| Sbjct: 133902 cccgcacgaagcagacggcg 133883
>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0681F10 Length = 170371 Score = 65.9 bits (33), Expect = 3e-08 Identities = 49/53 (92%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 |||||||||||||||||||||||||| | ||||| |||||| ||||||||||| Sbjct: 9346 cgatggcccgcacgaagcagacggcgcgcaagtccaccggcgggaaggcgccg 9398 Score = 65.9 bits (33), Expect = 3e-08 Identities = 49/53 (92%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 |||||||||||||||||||||||||| | ||||| |||||| ||||||||||| Sbjct: 8801 cgatggcccgcacgaagcagacggcgcgcaagtccaccggcgggaaggcgccg 8749 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 cccgcacgaagcagacggcg 94 |||||||||||||||||||| Sbjct: 138 cccgcacgaagcagacggcg 119
>gb|U25664.1|OSU25664 Oryza sativa histone H3 gene, complete cds Length = 711 Score = 65.9 bits (33), Expect = 3e-08 Identities = 49/53 (92%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 |||||||||||||||||||||||||| | ||||| |||||| ||||||||||| Sbjct: 229 cgatggcccgcacgaagcagacggcgcgcaagtccaccggcgggaaggcgccg 281
>gb|M15664.1|RICHIS3 Rice histone 3 gene, complete cds Length = 568 Score = 65.9 bits (33), Expect = 3e-08 Identities = 49/53 (92%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 |||||||||||||||||||||||||| | ||||| |||||| ||||||||||| Sbjct: 136 cgatggcccgcacgaagcagacggcgcgcaagtccaccggcgggaaggcgccg 188
>gb|M13378.1|MZEH3C2 Maize (Zea mays) histone H3 gene (H3C2), complete cds Length = 1001 Score = 65.9 bits (33), Expect = 3e-08 Identities = 49/53 (92%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 68 ccgatggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgcc 119 ||||||||||||||||||||||||||| | |||||||| ||||| |||||||| Sbjct: 419 ccgatggcccgcacgaagcagacggcgcgcaagtcgacgggcggcaaggcgcc 471
>ref|NM_185607.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 411 Score = 61.9 bits (31), Expect = 4e-07 Identities = 47/51 (92%), Gaps = 1/51 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 |||||||||||||||||||||||| | ||||| |||||| ||||||||||| Sbjct: 1 atggcccgcacgaagcagacggcgcgcaagtccaccggcgggaaggcgccg 51
>ref|NM_185613.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 411 Score = 61.9 bits (31), Expect = 4e-07 Identities = 47/51 (92%), Gaps = 1/51 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 |||||||||||||||||||||||| | ||||| |||||| ||||||||||| Sbjct: 1 atggcccgcacgaagcagacggcgcgcaagtccaccggcgggaaggcgccg 51
>ref|NM_185612.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 411 Score = 61.9 bits (31), Expect = 4e-07 Identities = 47/51 (92%), Gaps = 1/51 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 |||||||||||||||||||||||| | ||||| |||||| ||||||||||| Sbjct: 1 atggcccgcacgaagcagacggcgcgcaagtccaccggcgggaaggcgccg 51
>emb|Y08528.1|OSHISTON3 Oryza sativa mRNA for histone 3 Length = 529 Score = 61.9 bits (31), Expect = 4e-07 Identities = 48/53 (90%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgccg 120 ||||||||||| |||||||||| || |||||||||||||| ||||||||||| Sbjct: 72 cgatggcccgcncgaagcagacngctcggaagtcgaccggcgggaaggcgccg 124
>gb|M35388.1|MZEHISH3A Zea mays histone H3 gene, complete cds Length = 411 Score = 60.0 bits (30), Expect = 2e-06 Identities = 46/50 (92%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgcc 119 |||||||||||||||||||||||| | |||||||| ||||| |||||||| Sbjct: 1 atggcccgcacgaagcagacggcgcgcaagtcgacgggcggcaaggcgcc 50
>gb|BT018179.1| Zea mays clone EL01N0557G06.c mRNA sequence Length = 716 Score = 58.0 bits (29), Expect = 6e-06 Identities = 48/53 (90%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 68 ccgatggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgcc 119 ||||||||||||||||||||||||||| | ||||| || ||||| |||||||| Sbjct: 58 ccgatggcccgcacgaagcagacggcgcgcaagtcaacgggcggcaaggcgcc 110
>gb|AY521727.1| Trinotoperla nivata voucher BYU_ACPL019 histone H3 (H3) gene, partial cds Length = 354 Score = 58.0 bits (29), Expect = 6e-06 Identities = 39/41 (95%), Gaps = 1/41 (2%) Strand = Plus / Plus Query: 83 aagcagacggcgaggaagtcgaccggcgg-aaggcgccgcg 122 ||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 1 aagcagacggcaaggaagtcgaccggcggcaaggcgccgcg 41
>emb|X14732.1|CMHIST34 Duck H3 and H4 histone genes Length = 4717 Score = 56.0 bits (28), Expect = 3e-05 Identities = 47/52 (90%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 ||||||| |||||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 2834 cgatggcgcgcacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 2885 Score = 54.0 bits (27), Expect = 1e-04 Identities = 46/51 (90%), Gaps = 1/51 (1%) Strand = Plus / Minus Query: 70 gatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 |||||| |||||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 1886 gatggcgcgcacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 1836
>gb|M13379.1|MZEH3C4 Maize (Zea mays) histone H3 gene (H3C4), complete cds Length = 1264 Score = 56.0 bits (28), Expect = 3e-05 Identities = 47/52 (90%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgcc 119 |||||||||||||||||||||||||| | ||||| || ||||| |||||||| Sbjct: 524 cgatggcccgcacgaagcagacggcgcgcaagtcaacgggcggcaaggcgcc 575
>gb|M14396.1|CIIHISH3A Duck H3.4 variant histone gene Length = 921 Score = 54.0 bits (27), Expect = 1e-04 Identities = 46/51 (90%), Gaps = 1/51 (1%) Strand = Plus / Plus Query: 70 gatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 |||||| |||||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 340 gatggcgcgcacgaagcagacggcgtgtaagtcgacgggcaggaaggcgcc 390
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 52.0 bits (26), Expect = 4e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 70 gatggcccgcacgaagcagacggcgaggaagtcgaccg 107 |||||||||||| ||||||||||||| |||||| |||| Sbjct: 12852746 gatggcccgcacaaagcagacggcgaagaagtccaccg 12852709 Score = 42.1 bits (21), Expect = 0.38 Identities = 30/33 (90%) Strand = Plus / Minus Query: 70 gatggcccgcacgaagcagacggcgaggaagtc 102 |||||||||||| ||||||||||| | |||||| Sbjct: 12837190 gatggcccgcacaaagcagacggcaaagaagtc 12837158
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 52.0 bits (26), Expect = 4e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 70 gatggcccgcacgaagcagacggcgaggaagtcgaccg 107 |||||||||||| ||||||||||||| |||||| |||| Sbjct: 12807020 gatggcccgcacaaagcagacggcgaagaagtccaccg 12806983 Score = 42.1 bits (21), Expect = 0.38 Identities = 30/33 (90%) Strand = Plus / Minus Query: 70 gatggcccgcacgaagcagacggcgaggaagtc 102 |||||||||||| ||||||||||| | |||||| Sbjct: 12791464 gatggcccgcacaaagcagacggcaaagaagtc 12791432
>emb|AL844879.5|CNS08CB2 Oryza sativa chromosome 12, . BAC OSJNBa0036H15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 156724 Score = 52.0 bits (26), Expect = 4e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 70 gatggcccgcacgaagcagacggcgaggaagtcgaccg 107 |||||||||||| ||||||||||||| |||||| |||| Sbjct: 66481 gatggcccgcacaaagcagacggcgaagaagtccaccg 66518 Score = 42.1 bits (21), Expect = 0.38 Identities = 30/33 (90%) Strand = Plus / Plus Query: 70 gatggcccgcacgaagcagacggcgaggaagtc 102 |||||||||||| ||||||||||| | |||||| Sbjct: 82037 gatggcccgcacaaagcagacggcaaagaagtc 82069
>ref|XM_868935.1| PREDICTED: Bos taurus similar to histone 1, H2ai (predicted) (LOC616819), mRNA Length = 411 Score = 50.1 bits (25), Expect = 0.002 Identities = 47/53 (88%), Gaps = 1/53 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccgcg 122 ||||| ||||| ||||||||||| ||||||| |||||||| ||||||||||| Sbjct: 1 atggctcgcactaagcagacggctcggaagtccaccggcggcaaggcgccgcg 53
>ref|XM_849194.1| PREDICTED: Canis familiaris similar to histone 1, H2ai (predicted) (LOC611519), mRNA Length = 471 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg 111 ||||| |||||||||||||||||| | |||||||| ||||| Sbjct: 61 atggctcgcacgaagcagacggcgcgcaagtcgacgggcgg 101
>ref|XM_545428.1| PREDICTED: Canis familiaris similar to histone 1, H2ai (predicted) (LOC488306), mRNA Length = 411 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg 111 ||||| |||||||||||||||||| | |||||||| ||||| Sbjct: 1 atggctcgcacgaagcagacggcgcgcaagtcgacgggcgg 41
>ref|XM_545420.2| PREDICTED: Canis familiaris similar to histone 1, H2ai (predicted) (LOC488298), mRNA Length = 411 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg 111 ||||| |||||||||||||||||| | |||||||| ||||| Sbjct: 1 atggctcgcacgaagcagacggcgcgcaagtcgacgggcgg 41
>ref|XM_545397.2| PREDICTED: Canis familiaris similar to histone 1, H2ai (predicted) (LOC488275), mRNA Length = 459 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg 111 ||||| |||||||||||||||||| | |||||||| ||||| Sbjct: 49 atggctcgcacgaagcagacggcgcgcaagtcgacgggcgg 89
>ref|XM_848810.1| PREDICTED: Canis familiaris similar to histone 1, H2ai (predicted) (LOC611167), mRNA Length = 504 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg 111 ||||| |||||||||||||||||| | |||||||| ||||| Sbjct: 94 atggctcgcacgaagcagacggcgcgcaagtcgacgggcgg 134
>ref|XM_848782.1| PREDICTED: Canis familiaris similar to histone 1, H2ai (predicted) (LOC611138), mRNA Length = 411 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg 111 ||||| |||||||||||||||||| | |||||||| ||||| Sbjct: 1 atggctcgcacgaagcagacggcgcgcaagtcgacgggcgg 41
>ref|XM_545429.1| PREDICTED: Canis familiaris similar to histone 1, H2ai (predicted) (LOC488307), mRNA Length = 411 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg 111 ||||| |||||||||||||||||| | |||||||| ||||| Sbjct: 1 atggctcgcacgaagcagacggcgcgcaagtcgacgggcgg 41
>ref|XM_545385.1| PREDICTED: Canis familiaris similar to histone 1, H2ai (predicted) (LOC488263), mRNA Length = 411 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg 111 ||||| |||||||||||||||||| | |||||||| ||||| Sbjct: 1 atggctcgcacgaagcagacggcgcgcaagtcgacgggcgg 41
>ref|XM_854155.1| PREDICTED: Canis familiaris similar to histone 1, H2ai (predicted), transcript variant 3 (LOC480760), mRNA Length = 862 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg 111 ||||| |||||||||||||||||| | |||||||| ||||| Sbjct: 1 atggctcgcacgaagcagacggcgcgcaagtcgacgggcgg 41
>ref|XM_537880.2| PREDICTED: Canis familiaris similar to histone 1, H2ai (predicted), transcript variant 1 (LOC480760), mRNA Length = 1422 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg 111 ||||| |||||||||||||||||| | |||||||| ||||| Sbjct: 1 atggctcgcacgaagcagacggcgcgcaagtcgacgggcgg 41
>gb|AY521729.1| Tallaperla lobata voucher BYU_ACPL059 histone H3 (H3) gene, partial cds Length = 354 Score = 50.1 bits (25), Expect = 0.002 Identities = 38/41 (92%), Gaps = 1/41 (2%) Strand = Plus / Plus Query: 83 aagcagacggcgaggaagtcgaccggcgg-aaggcgccgcg 122 ||||||||||| |||||||||||||| || ||||||||||| Sbjct: 1 aagcagacggcaaggaagtcgaccggaggaaaggcgccgcg 41
>gb|AY521728.1| Aphanicerca capensis voucher BYU_ACPL028 histone H3 (H3) gene, partial cds Length = 354 Score = 50.1 bits (25), Expect = 0.002 Identities = 38/41 (92%), Gaps = 1/41 (2%) Strand = Plus / Plus Query: 83 aagcagacggcgaggaagtcgaccggcgg-aaggcgccgcg 122 ||||||||||| |||||||||||||| || ||||||||||| Sbjct: 1 aagcagacggcaaggaagtcgaccggaggaaaggcgccgcg 41
>gb|AY521718.1| Romalea sp. BYU_ACOR015 histone H3 (H3) gene, partial cds Length = 354 Score = 50.1 bits (25), Expect = 0.002 Identities = 38/41 (92%), Gaps = 1/41 (2%) Strand = Plus / Plus Query: 83 aagcagacggcgaggaagtcgaccggcgg-aaggcgccgcg 122 |||||||||||| | |||||||||||||| ||||||||||| Sbjct: 1 aagcagacggcgcgcaagtcgaccggcggaaaggcgccgcg 41
>ref|XM_416198.1| PREDICTED: Gallus gallus similar to GLP_39_88222_87572 (LOC417958), mRNA Length = 1512 Score = 48.1 bits (24), Expect = 0.006 Identities = 46/52 (88%), Gaps = 1/52 (1%) Strand = Plus / Minus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 ||||||| || ||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 980 cgatggcgcgtacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 929
>ref|XM_416193.1| PREDICTED: Gallus gallus similar to histone protein Hist2h3c1 (LOC417953), mRNA Length = 2271 Score = 48.1 bits (24), Expect = 0.006 Identities = 46/52 (88%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 ||||||| || ||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 1859 cgatggcgcgtacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 1910
>ref|XM_416186.1| PREDICTED: Gallus gallus similar to GLP_39_88222_87572 (LOC417945), mRNA Length = 972 Score = 48.1 bits (24), Expect = 0.006 Identities = 46/52 (88%), Gaps = 1/52 (1%) Strand = Plus / Minus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 ||||||| || ||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 788 cgatggcgcgtacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 737
>emb|X02218.1|GGHIS1 Chicken duplicated genes for histone H2A, H4 and a histone H3 gene Length = 8384 Score = 48.1 bits (24), Expect = 0.006 Identities = 46/52 (88%), Gaps = 1/52 (1%) Strand = Plus / Minus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 ||||||| || ||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 3756 cgatggcgcgtacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 3705
>emb|CR390239.1| Gallus gallus finished cDNA, clone ChEST932d15 Length = 578 Score = 48.1 bits (24), Expect = 0.006 Identities = 46/52 (88%), Gaps = 1/52 (1%) Strand = Plus / Minus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 ||||||| || ||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 544 cgatggcgcgtacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 493
>emb|X62291.1|GGHISH3IV G.gallus gene for histone H3-IV Length = 1094 Score = 48.1 bits (24), Expect = 0.006 Identities = 46/52 (88%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 ||||||| || ||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 413 cgatggcgcgtacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 464
>emb|X62292.1|GGHISH3V G.gallus gene for histone H3-V Length = 1107 Score = 48.1 bits (24), Expect = 0.006 Identities = 46/52 (88%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 ||||||| || ||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 413 cgatggcgcgtacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 464
>gb|M61154.1|CHKH3AA Chicken histone H3 gene, complete cds Length = 784 Score = 46.1 bits (23), Expect = 0.024 Identities = 45/51 (88%), Gaps = 1/51 (1%) Strand = Plus / Plus Query: 70 gatggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 |||||| || ||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 353 gatggcgcgtacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 403
>gb|M36658.1|MZEH3A Corn histone H3 (H3C3) gene, complete cds Length = 1177 Score = 46.1 bits (23), Expect = 0.024 Identities = 38/43 (88%) Strand = Plus / Plus Query: 69 cgatggcccgcacgaagcagacggcgaggaagtcgaccggcgg 111 ||||||| |||||||||||||||||| | ||||| || ||||| Sbjct: 544 cgatggctcgcacgaagcagacggcgcgcaagtccacgggcgg 586
>ref|XM_425464.1| PREDICTED: Gallus gallus similar to histone protein Hist2h3c1 (LOC427890), mRNA Length = 600 Score = 44.1 bits (22), Expect = 0.095 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 ||||| || ||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 190 atggcgcgtacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 239
>ref|XM_416190.1| PREDICTED: Gallus gallus similar to GLP_39_88222_87572 (LOC417949), mRNA Length = 752 Score = 44.1 bits (22), Expect = 0.095 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 ||||| || ||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 723 atggcgcgtacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 674
>emb|X06964.1|VCHIS34A Volvox carteri H3-II and H4-II genes for histones H3 and H4 Length = 1504 Score = 44.1 bits (22), Expect = 0.095 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgcc 119 |||||||| || |||||||| ||| | |||||||||||||| |||||||| Sbjct: 653 atggcccgtactaagcagactgcgcgcaagtcgaccggcggcaaggcgcc 702
>emb|V00521.1|HSHI01 Human gene fragment for histone H3 (germline gene) Length = 241 Score = 44.1 bits (22), Expect = 0.095 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgcc 119 ||||| || ||||||||||||||| | |||||||| ||||| |||||||| Sbjct: 161 atggcgcgtacgaagcagacggcgcgtaagtcgacgggcggtaaggcgcc 210
>gb|AY521730.1| Scopura montana voucher BYU_ACPL098 histone H3 (H3) gene, partial cds Length = 354 Score = 44.1 bits (22), Expect = 0.095 Identities = 25/26 (96%) Strand = Plus / Plus Query: 83 aagcagacggcgaggaagtcgaccgg 108 |||||||||||||||||||| ||||| Sbjct: 1 aagcagacggcgaggaagtctaccgg 26
>gb|AY521726.1| Pteronarcys californica voucher BYU_ACPL006 histone H3 (H3) gene, partial cds Length = 354 Score = 44.1 bits (22), Expect = 0.095 Identities = 25/26 (96%) Strand = Plus / Plus Query: 83 aagcagacggcgaggaagtcgaccgg 108 ||||||||||| |||||||||||||| Sbjct: 1 aagcagacggcaaggaagtcgaccgg 26
>gb|AY521725.1| Oemopteryx vanduzeea voucher BYU_ACPL004 histone H3 (H3) gene, partial cds Length = 354 Score = 44.1 bits (22), Expect = 0.095 Identities = 25/26 (96%) Strand = Plus / Plus Query: 83 aagcagacggcgaggaagtcgaccgg 108 ||||||||||| |||||||||||||| Sbjct: 1 aagcagacggcaaggaagtcgaccgg 26
>gb|U37579.1|GGU37579 Gallus gallus histone H3-VIII gene, complete cds Length = 1809 Score = 44.1 bits (22), Expect = 0.095 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 ||||| || ||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 472 atggcgcgtacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 521
>gb|U37578.1|GGU37578 Gallus gallus histone H3-VII gene, complete cds Length = 1204 Score = 44.1 bits (22), Expect = 0.095 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 ||||| || ||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 489 atggcgcgtacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 538
>gb|U37577.1|GGU37577 Gallus gallus histone H3-VI gene, complete cds Length = 1271 Score = 44.1 bits (22), Expect = 0.095 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 ||||| || ||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 285 atggcgcgtacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 334
>gb|U38423.1|TAU38423 Triticum aestivum histone H3 gene, partial cds, clone W2 Length = 486 Score = 44.1 bits (22), Expect = 0.095 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgcc 119 |||||||||||||||||||| || | ||||| |||||||| |||||||| Sbjct: 1 atggcccgcacgaagcagaccgcccgcaagtccaccggcggcaaggcgcc 50
>gb|U38422.1|TAU38422 Triticum aestivum histone H3 gene, partial cds, clone W1 Length = 479 Score = 44.1 bits (22), Expect = 0.095 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgcc 119 |||||||||||||||||||| || | ||||| |||||||| |||||||| Sbjct: 1 atggcccgcacgaagcagaccgcccgcaagtccaccggcggcaaggcgcc 50
>gb|U38420.1|HVU38420 Hordeum vulgare histone H3 gene, partial cds, clone B1 Length = 494 Score = 44.1 bits (22), Expect = 0.095 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgcc 119 |||||||||||||||||||| || | ||||| |||||||| |||||||| Sbjct: 1 atggcccgcacgaagcagaccgcccgcaagtccaccggcggcaaggcgcc 50
>gb|M61155.1|CHKH3AB Chicken histone H3 gene, complete cds Length = 1017 Score = 44.1 bits (22), Expect = 0.095 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 ||||| || ||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 161 atggcgcgtacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 210
>gb|J00869.1|CHKH3A Chicken histone H3 gene (intronless) Length = 411 Score = 44.1 bits (22), Expect = 0.095 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggc-ggaaggcgcc 119 ||||| || ||||||||||||||| | |||||||| ||| |||||||||| Sbjct: 1 atggcgcgtacgaagcagacggcgcgtaagtcgacgggcgggaaggcgcc 50
>ref|XM_545399.1| PREDICTED: Canis familiaris similar to histone 1, H2ai (predicted) (LOC488277), mRNA Length = 411 Score = 42.1 bits (21), Expect = 0.38 Identities = 36/41 (87%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg 111 ||||| || ||||||||||||||| | |||||||| ||||| Sbjct: 1 atggctcgtacgaagcagacggcgcgcaagtcgacgggcgg 41
>gb|AY125247.1| Gratidia fritzchei histone 3 gene, partial cds Length = 356 Score = 42.1 bits (21), Expect = 0.38 Identities = 27/29 (93%) Strand = Plus / Plus Query: 83 aagcagacggcgaggaagtcgaccggcgg 111 ||||||||||||||||| ||||| ||||| Sbjct: 10 aagcagacggcgaggaaatcgactggcgg 38
>gb|AY707443.1| Galloisiana sp. GB13.1 histone 3 gene, partial cds Length = 376 Score = 42.1 bits (21), Expect = 0.38 Identities = 37/41 (90%), Gaps = 1/41 (2%) Strand = Plus / Plus Query: 83 aagcagacggcgaggaagtcgaccggcgg-aaggcgccgcg 122 ||||||||||| |||||||| ||||| || ||||||||||| Sbjct: 14 aagcagacggccaggaagtctaccgggggcaaggcgccgcg 54
>dbj|AB195975.1| Lilium longiflorum YAH3 mRNA for histone H3, complete cds Length = 463 Score = 42.1 bits (21), Expect = 0.38 Identities = 36/41 (87%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg 111 ||||||||||| |||||||| ||| | ||||| |||||||| Sbjct: 8 atggcccgcaccaagcagactgcgcgcaagtccaccggcgg 48
>gb|U38421.1|HVU38421 Hordeum vulgare histone H3 gene, partial cds, clone B2 Length = 207 Score = 42.1 bits (21), Expect = 0.38 Identities = 36/41 (87%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg 111 |||||||||||||||||||| || | ||||| |||||||| Sbjct: 1 atggcccgcacgaagcagaccgcctgcaagtccaccggcgg 41
>ref|NM_185609.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 432 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 cccgcacgaagcagacggcg 94 |||||||||||||||||||| Sbjct: 36 cccgcacgaagcagacggcg 55
>gb|AY520709.1| Chthamalus stellatus histone H3 gene, partial cds Length = 328 Score = 40.1 bits (20), Expect = 1.5 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 98 aagtcgaccggcgg-aaggcgccgcgga 124 |||||||||||||| ||||||||||||| Sbjct: 5 aagtcgaccggcggcaaggcgccgcgga 32
>ref|XM_545888.2| PREDICTED: Canis familiaris similar to Bcl-2-related protein A1 (BFL-1 protein) (Hemopoietic-specific early response protein) (GRS protein) (LOC488770), mRNA Length = 990 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 cccgagccccgccagccccg 70 |||||||||||||||||||| Sbjct: 205 cccgagccccgccagccccg 224
>emb|CR382361.9| Zebrafish DNA sequence from clone DKEY-24P6 in linkage group 3, complete sequence Length = 61415 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ctcctcaaccccgagccccg 61 |||||||||||||||||||| Sbjct: 57932 ctcctcaaccccgagccccg 57913
>dbj|AB195652.1| Lilium longiflorum soH3-2 mRNA for histone soH3-2, complete cds, clone: GC1661 Length = 699 Score = 40.1 bits (20), Expect = 1.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 68 ccgatggcccgcacgaagcagacggcgaggaagtcgaccggcgg 111 ||||||||||| ||||||||||| || | ||||| |||||||| Sbjct: 181 ccgatggcccgtacgaagcagactgcccgcaagtccaccggcgg 224
>dbj|AB195974.1| Lilium longiflorum MPH3 mRNA for histone H3, complete cds Length = 631 Score = 40.1 bits (20), Expect = 1.5 Identities = 38/44 (86%) Strand = Plus / Plus Query: 68 ccgatggcccgcacgaagcagacggcgaggaagtcgaccggcgg 111 ||||||||||| ||||||||||| || | ||||| |||||||| Sbjct: 83 ccgatggcccgtacgaagcagactgcccgcaagtccaccggcgg 126
>gb|AC009964.11| Homo sapiens BAC clone RP11-387G23 from 2, complete sequence Length = 197087 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 37 tccctctcctcaaccccgagcccc 60 ||||||||||||||||| |||||| Sbjct: 109620 tccctctcctcaacccccagcccc 109643
>emb|AL662809.14| Mouse DNA sequence from clone RP23-441I8 on chromosome 11, complete sequence Length = 103129 Score = 40.1 bits (20), Expect = 1.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 70 gatggcccgcacgaagcagacggcgaggaagtcgac 105 |||||| ||||| ||||||||||| |||||||||| Sbjct: 46283 gatggcacgcaccaagcagacggcacggaagtcgac 46318
>gb|U38427.1|GMU38427 Glycine max histone H3 gene, partial cds, clone S4 Length = 639 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagac 90 |||||||||||||||||||| Sbjct: 1 atggcccgcacgaagcagac 20
>gb|U38426.1|GMU38426 Glycine max histone H3 gene, partial cds, clone S3 Length = 651 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagac 90 |||||||||||||||||||| Sbjct: 1 atggcccgcacgaagcagac 20
>gb|U38425.1|GMU38425 Glycine max histone H3 gene, partial cds, clone S2 Length = 660 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagac 90 |||||||||||||||||||| Sbjct: 1 atggcccgcacgaagcagac 20
>gb|U38424.1|GMU38424 Glycine max histone H3 gene, partial cds, clone S1 Length = 690 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagac 90 |||||||||||||||||||| Sbjct: 1 atggcccgcacgaagcagac 20
>emb|X13679.1|OSHIS3PS Oryza sativa H3 histone pseudogene H3R-12 Length = 1920 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 cccgcacgaagcagacggcg 94 |||||||||||||||||||| Sbjct: 1135 cccgcacgaagcagacggcg 1154
>ref|XM_527286.1| PREDICTED: Pan troglodytes similar to histone 1, H3g (LOC471908), mRNA Length = 411 Score = 38.2 bits (19), Expect = 5.9 Identities = 47/55 (85%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccgcgga 124 |||||||| ||||||||||| || | ||||| |||||||| ||||| ||||||| Sbjct: 1 atggcccggacgaagcagacagctcgcaagtctaccggcggcaaggcaccgcgga 55
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 accccgagccccgccagcc 67 ||||||||||||||||||| Sbjct: 2585311 accccgagccccgccagcc 2585293
>ref|NM_001458.2| Homo sapiens filamin C, gamma (actin binding protein 280) (FLNC), mRNA Length = 9142 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 ccgagccccgccagccccg 70 ||||||||||||||||||| Sbjct: 60 ccgagccccgccagccccg 78
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 cgaagcagacggcgaggaa 99 ||||||||||||||||||| Sbjct: 457855 cgaagcagacggcgaggaa 457873
>ref|NG_000009.2| Homo sapiens small histone family cluster (HFS@) on chromosome 6 Length = 91567 Score = 38.2 bits (19), Expect = 5.9 Identities = 47/55 (85%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccgcgga 124 |||||||| ||||||||||| || | ||||| |||||||| ||||| ||||||| Sbjct: 3660 atggcccggacgaagcagacagctcgcaagtctaccggcggcaaggcaccgcgga 3714
>ref|NM_003535.2| Homo sapiens histone 1, H3j (HIST1H3J), mRNA Length = 478 Score = 38.2 bits (19), Expect = 5.9 Identities = 47/55 (85%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccgcgga 124 |||||||| ||||||||||| || | ||||| |||||||| ||||| ||||||| Sbjct: 1 atggcccggacgaagcagacagctcgcaagtctaccggcggcaaggcaccgcgga 55
>gb|AY813016.1| Schistosoma japonicum SJCHGC01198 protein mRNA, complete cds Length = 459 Score = 38.2 bits (19), Expect = 5.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 83 aagcagacggcgaggaagtcgac 105 ||||||||||||||||| ||||| Sbjct: 27 aagcagacggcgaggaaatcgac 49
>ref|XM_905850.2| PREDICTED: Mus musculus similar to histone 1, H2ai (predicted) (LOC382523), mRNA Length = 411 Score = 38.2 bits (19), Expect = 5.9 Identities = 31/35 (88%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgac 105 ||||| ||||| ||||||||||| |||||||||| Sbjct: 1 atggcacgcaccaagcagacggcacggaagtcgac 35
>ref|XM_356549.3| PREDICTED: Mus musculus similar to histone 1, H2ai (predicted) (LOC382523), mRNA Length = 411 Score = 38.2 bits (19), Expect = 5.9 Identities = 31/35 (88%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgac 105 ||||| ||||| ||||||||||| |||||||||| Sbjct: 1 atggcacgcaccaagcagacggcacggaagtcgac 35
>gb|AF531283.1| Homo sapiens histone H3 (HIST1H3J) gene, complete cds Length = 1227 Score = 38.2 bits (19), Expect = 5.9 Identities = 47/55 (85%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccgcgga 124 |||||||| ||||||||||| || | ||||| |||||||| ||||| ||||||| Sbjct: 410 atggcccggacgaagcagacagctcgcaagtctaccggcggcaaggcaccgcgga 464
>gb|AY125225.1| Grylloblatta campodeiformis histone 3 gene, partial cds Length = 371 Score = 38.2 bits (19), Expect = 5.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 83 aagcagacggcgaggaagtcgac 105 ||||||||||| ||||||||||| Sbjct: 10 aagcagacggctaggaagtcgac 32
>emb|Z98744.2|HS193B12 Human DNA sequence from clone RP1-193B12 on chromosome 6p21.3-22.3 Contains the H2AFD, H2BFD, H2AFI, H1F5, H3FF, H4FK, H3FJ, H2AFN, and H2BFN histone genes, the OR2B2 gene for olfactory receptor 2B2, histone H2B family member I pseudogene H2BFIP, a hypothetical protein pseudogene, ESTs, STSs, GSSs and CpG islands, complete sequence Length = 100374 Score = 38.2 bits (19), Expect = 5.9 Identities = 47/55 (85%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccgcgga 124 |||||||| ||||||||||| || | ||||| |||||||| ||||| ||||||| Sbjct: 54533 atggcccggacgaagcagacagctcgcaagtctaccggcggcaaggcaccgcgga 54479
>gb|AF150945.2| Haloarcula hispanica clone Thd73-9 hypothetical protein, partial cds Length = 824 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 acgaagcagacggcgagga 98 ||||||||||||||||||| Sbjct: 89 acgaagcagacggcgagga 71
>emb|Z83737.1|HSZ83737 H.sapiens hH3/j gene Length = 771 Score = 38.2 bits (19), Expect = 5.9 Identities = 47/55 (85%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccgcgga 124 |||||||| ||||||||||| || | ||||| |||||||| ||||| ||||||| Sbjct: 154 atggcccggacgaagcagacagctcgcaagtctaccggcggcaaggcaccgcgga 208
>gb|AC104365.4| Homo sapiens chromosome 18, clone RP11-108P20, complete sequence Length = 157871 Score = 38.2 bits (19), Expect = 5.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 38 ccctctcctcaaccccgagccccgcca 64 |||||||||||||| | |||||||||| Sbjct: 67603 ccctctcctcaaccacaagccccgcca 67577
>dbj|AB195650.1| Lilium longiflorum soH3-1 mRNA for histone soH3-1, complete cds, clone: GC0075 Length = 775 Score = 38.2 bits (19), Expect = 5.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 68 ccgatggcccgcacgaagcagac 90 ||||||||||| ||||||||||| Sbjct: 57 ccgatggcccgtacgaagcagac 79
>emb|BX950377.2| Gallus gallus finished cDNA, clone ChEST26j23 Length = 727 Score = 38.2 bits (19), Expect = 5.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggc 93 ||||||||||| ||||||||||| Sbjct: 137 atggcccgcaccaagcagacggc 159
>gb|AC025594.5|AC025594 Homo sapiens chromosome 7 clone RP11-309L24, complete sequence Length = 200197 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 ccgagccccgccagccccg 70 ||||||||||||||||||| Sbjct: 19639 ccgagccccgccagccccg 19657
>gb|AC024952.4|AC024952 Homo sapiens chromosome 7 clone RP11-66F23, complete sequence Length = 182426 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 ccgagccccgccagccccg 70 ||||||||||||||||||| Sbjct: 114945 ccgagccccgccagccccg 114963
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 106 cggcggaaggcgccgcgga 124 ||||||||||||||||||| Sbjct: 2830471 cggcggaaggcgccgcgga 2830489
>gb|AF146692.1|AF146692 Homo sapiens filamin 2 (FLN2) mRNA, complete cds Length = 9044 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 ccgagccccgccagccccg 70 ||||||||||||||||||| Sbjct: 63 ccgagccccgccagccccg 81
>gb|AF252549.1|AF252549 Homo sapiens gamma-filamin (FLNC) gene, complete cds Length = 29466 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 ccgagccccgccagccccg 70 ||||||||||||||||||| Sbjct: 762 ccgagccccgccagccccg 780
>ref|XM_320335.2| Anopheles gambiae str. PEST ENSANGP00000014183 (ENSANGG00000011694), partial mRNA Length = 411 Score = 38.2 bits (19), Expect = 5.9 Identities = 37/43 (86%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcggaa 113 |||||||| ||||||||||| || | ||||||||||| |||| Sbjct: 1 atggcccgtacgaagcagaccgcccgtaagtcgaccggtggaa 43
>ref|XM_310014.2| Anopheles gambiae str. PEST ENSANGP00000015158 (ENSANGG00000012669), partial mRNA Length = 1548 Score = 38.2 bits (19), Expect = 5.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 53 cgagccccgccagccccga 71 ||||||||||||||||||| Sbjct: 523 cgagccccgccagccccga 505
>emb|Z60597.1|HS29E2R H.sapiens CpG island DNA genomic Mse1 fragment, clone 29e2, reverse read cpg29e2.rt1a Length = 295 Score = 38.2 bits (19), Expect = 5.9 Identities = 47/55 (85%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 71 atggcccgcacgaagcagacggcgaggaagtcgaccggcgg-aaggcgccgcgga 124 |||||||| ||||||||||| || | ||||| |||||||| ||||| ||||||| Sbjct: 122 atggcccggacgaagcagacagctcgcaagtctaccggcggcaaggcaccgcgga 176
>gb|AC147839.2| Xenopus tropicalis clone CH216-9N23, complete sequence Length = 184473 Score = 38.2 bits (19), Expect = 5.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 14 agccccccaaatctccagagcaa 36 |||||||||||||||| |||||| Sbjct: 11206 agccccccaaatctcctgagcaa 11184 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 761,549 Number of Sequences: 3902068 Number of extensions: 761549 Number of successful extensions: 58738 Number of sequences better than 10.0: 123 Number of HSP's better than 10.0 without gapping: 114 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 58254 Number of HSP's gapped (non-prelim): 489 length of query: 126 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 105 effective length of database: 17,151,101,840 effective search space: 1800865693200 effective search space used: 1800865693200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
