ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast05c08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189879.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1077 Score = 353 bits (178), Expect = 3e-94 Identities = 313/358 (87%) Strand = Plus / Plus Query: 77 gctcgccgccggcgagctcgtgccgcaactccaccatgaagctgaacatcgcgaacccca 136 |||||||||| ||||||||| ||||| | | ||||||||| | |||||||||||||| | Sbjct: 57 gctcgccgcccgcgagctcgcgccgcttcgcaaccatgaagttcaacatcgcgaacccga 116 Query: 137 ccacggggtgccagaagaaggtcgagatcgatgacgaccagaagctgcggaacctttatg 196 |||| ||||||||||||||| |||||||||||||||||||||||||||| ||| || Sbjct: 117 ccaccgggtgccagaagaagctcgagatcgatgacgaccagaagctgcgtgcattttttg 176 Query: 197 acaagagaatctcccaggaggtagttggtgatcttctgggtgaggaattcaagggttata 256 ||||||| ||||| |||||||| ||| ||| |||||| |||||||||||||| ||| Sbjct: 177 acaagaggatctctcaggaggtcagtggcgatgctctgggcgaggaattcaagggctatg 236 Query: 257 tcttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaa 316 |||||||||||||||| || ||||| |||||||| ||||| |||||||| |||||||| | Sbjct: 237 tcttcaagatcatggggggttgtgacaagcagggtttccctatgaagcagggagtgctca 296 Query: 317 cttctgggcgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttggca 376 || |||| |||||||||||||| ||||||||||||||||||||||||||||| | ||||| Sbjct: 297 ctgctggacgtgtccgccttcttcttcacaggggcacaccttgcttccgtgggtatggca 356 Query: 377 ggcgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcagccaagacct 434 ||||| |||||||||||||||| ||||| |||||||||||||| |||||||| ||||| Sbjct: 357 ggcgtgatggtgagcgcaggaggaagtctgtccgtggttgcatcgtcagccaggacct 414
>dbj|AK069465.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022D14, full insert sequence Length = 1078 Score = 353 bits (178), Expect = 3e-94 Identities = 313/358 (87%) Strand = Plus / Plus Query: 77 gctcgccgccggcgagctcgtgccgcaactccaccatgaagctgaacatcgcgaacccca 136 |||||||||| ||||||||| ||||| | | ||||||||| | |||||||||||||| | Sbjct: 58 gctcgccgcccgcgagctcgcgccgcttcgcaaccatgaagttcaacatcgcgaacccga 117 Query: 137 ccacggggtgccagaagaaggtcgagatcgatgacgaccagaagctgcggaacctttatg 196 |||| ||||||||||||||| |||||||||||||||||||||||||||| ||| || Sbjct: 118 ccaccgggtgccagaagaagctcgagatcgatgacgaccagaagctgcgtgcattttttg 177 Query: 197 acaagagaatctcccaggaggtagttggtgatcttctgggtgaggaattcaagggttata 256 ||||||| ||||| |||||||| ||| ||| |||||| |||||||||||||| ||| Sbjct: 178 acaagaggatctctcaggaggtcagtggcgatgctctgggcgaggaattcaagggctatg 237 Query: 257 tcttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaa 316 |||||||||||||||| || ||||| |||||||| ||||| |||||||| |||||||| | Sbjct: 238 tcttcaagatcatggggggttgtgacaagcagggtttccctatgaagcagggagtgctca 297 Query: 317 cttctgggcgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttggca 376 || |||| |||||||||||||| ||||||||||||||||||||||||||||| | ||||| Sbjct: 298 ctgctggacgtgtccgccttcttcttcacaggggcacaccttgcttccgtgggtatggca 357 Query: 377 ggcgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcagccaagacct 434 ||||| |||||||||||||||| ||||| |||||||||||||| |||||||| ||||| Sbjct: 358 ggcgtgatggtgagcgcaggaggaagtctgtccgtggttgcatcgtcagccaggacct 415
>gb|AF295599.1| Zea mays ribosomal protein s6 RPS6-2 (rps6-2) mRNA, complete cds Length = 1023 Score = 323 bits (163), Expect = 3e-85 Identities = 301/347 (86%) Strand = Plus / Plus Query: 88 gcgagctcgtgccgcaactccaccatgaagctgaacatcgcgaaccccaccacggggtgc 147 ||||||||| |||||||| ||||||||||| | |||||||||||||| | || |||||| Sbjct: 45 gcgagctcgcgccgcaacgccaccatgaagttcaacatcgcgaacccgtctaccgggtgc 104 Query: 148 cagaagaaggtcgagatcgatgacgaccagaagctgcggaacctttatgacaagagaatc 207 ||||||||| | || ||||||||||||||||| || || | |||||||| || ||| Sbjct: 105 cagaagaagctggaaatcgatgacgaccagaaactacgtgccttttatgaccgaaggatc 164 Query: 208 tcccaggaggtagttggtgatcttctgggtgaggaattcaagggttatatcttcaagatc 267 ||||||||||| ||||||| |||||||||||| || ||||||||| ||||||||||| Sbjct: 165 tcccaggaggtcagtggtgatgctctgggtgaggagtttaagggttatgtcttcaagatc 224 Query: 268 atgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgt 327 |||||||| ||||| || || ||||||||||||||||||||||| || |||||||| ||| Sbjct: 225 atgggtggatgtgacaaacaaggcttcccaatgaagcaaggagttctgacttctggtcgt 284 Query: 328 gtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcaggcgtaatggt 387 |||||||||||||| ||||| ||||| || |||||||| |||| |||||||||||||||| Sbjct: 285 gtccgccttctgctccacagaggcactccctgcttccgcggttatggcaggcgtaatggt 344 Query: 388 gagcgcaggagaaagtccgtccgtggttgcattgtcagccaagacct 434 ||||||||||| ||||| ||||||||||| ||||| ||||||||||| Sbjct: 345 gagcgcaggaggaagtctgtccgtggttgtattgtgagccaagacct 391
>gb|AY103674.1| Zea mays PCO104001 mRNA sequence Length = 1198 Score = 323 bits (163), Expect = 3e-85 Identities = 301/347 (86%) Strand = Plus / Plus Query: 88 gcgagctcgtgccgcaactccaccatgaagctgaacatcgcgaaccccaccacggggtgc 147 ||||||||| |||||||| ||||||||||| | |||||||||||||| | || |||||| Sbjct: 173 gcgagctcgcgccgcaacgccaccatgaagttcaacatcgcgaacccgtctaccgggtgc 232 Query: 148 cagaagaaggtcgagatcgatgacgaccagaagctgcggaacctttatgacaagagaatc 207 ||||||||| | || ||||||||||||||||| || || | |||||||| || ||| Sbjct: 233 cagaagaagctggaaatcgatgacgaccagaaactacgtgccttttatgaccgaaggatc 292 Query: 208 tcccaggaggtagttggtgatcttctgggtgaggaattcaagggttatatcttcaagatc 267 ||||||||||| ||||||| |||||||||||| || ||||||||| ||||||||||| Sbjct: 293 tcccaggaggtcagtggtgatgctctgggtgaggagtttaagggttatgtcttcaagatc 352 Query: 268 atgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgt 327 |||||||| ||||| || || ||||||||||||||||||||||| || |||||||| ||| Sbjct: 353 atgggtggatgtgacaaacaaggcttcccaatgaagcaaggagttctgacttctggtcgt 412 Query: 328 gtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcaggcgtaatggt 387 |||||||||||||| ||||| ||||| || |||||||| |||| |||||||||||||||| Sbjct: 413 gtccgccttctgctccacagaggcactccctgcttccgcggttatggcaggcgtaatggt 472 Query: 388 gagcgcaggagaaagtccgtccgtggttgcattgtcagccaagacct 434 ||||||||||| ||||| ||||||||||| ||||| ||||||||||| Sbjct: 473 gagcgcaggaggaagtctgtccgtggttgtattgtgagccaagacct 519
>gb|U92045.1|ZMU92045 Zea mays ribosomal protein S6 RPS6-1 (rps6-1) mRNA, complete cds Length = 1039 Score = 317 bits (160), Expect = 2e-83 Identities = 322/376 (85%) Strand = Plus / Plus Query: 59 ccacccagcgttcgggttgctcgccgccggcgagctcgtgccgcaactccaccatgaagc 118 |||||||||| ||| | | ||||| || |||||| || |||||||| ||||||||||| Sbjct: 17 ccacccagcgctcgagctcctcgctccctgcgagcgcgcgccgcaacgccaccatgaagt 76 Query: 119 tgaacatcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatgacgaccaga 178 | |||||||||||||| |||| |||||||| |||||| | || |||||||||||||||| Sbjct: 77 tcaacatcgcgaacccttccaccgggtgccaaaagaagctggaaatcgatgacgaccaga 136 Query: 179 agctgcggaacctttatgacaagagaatctcccaggaggtagttggtgatcttctgggtg 238 ||||||| | |||||||| || || ||||||||||| ||||||| |||||||| Sbjct: 137 agctgcgtgccttttatgaccgaaggatatcccaggaggtcagtggtgatgctctgggtg 196 Query: 239 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 298 |||| |||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 197 aggagttcaagggttatgtcttcaagatcatgggtggatgtgacaagcaaggcttcccaa 256 Query: 299 tgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggcacacctt 358 ||||||||||||| | |||||||| ||||| || |||||||| || ||||| || || | Sbjct: 257 tgaagcaaggagttttgacttctggtcgtgttcgtcttctgctccatagggggactccct 316 Query: 359 gcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgca 418 |||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct: 317 gcttccgtggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgtggttgca 376 Query: 419 ttgtcagccaagacct 434 | || ||||||||||| Sbjct: 377 tcgtgagccaagacct 392
>ref|XM_470801.1| Oryza sativa (japonica cultivar-group), mRNA Length = 983 Score = 289 bits (146), Expect = 4e-75 Identities = 278/322 (86%) Strand = Plus / Plus Query: 110 ccatgaagctgaacatcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatg 169 |||||||| | |||||||| ||||| ||||| ||||||||||||||| |||||||||||| Sbjct: 40 ccatgaagttcaacatcgccaacccgaccaccgggtgccagaagaagctcgagatcgatg 99 Query: 170 acgaccagaagctgcggaacctttatgacaagagaatctcccaggaggtagttggtgatc 229 ||||||||||||| ||| ||||||||||||| ||||||||||| || ||||||| Sbjct: 100 acgaccagaagctccgggcattttatgacaagaggatctcccaggaagtcagtggtgatg 159 Query: 230 ttctgggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagg 289 ||| || || ||||||||||| ||| | |||||||||||||| |||||||| ||||| | Sbjct: 160 ctcttggcgaagaattcaagggctatgtattcaagatcatgggaggctgtgacaagcaag 219 Query: 290 gcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggg 349 | ||||| |||||||| || ||||| |||||||| |||||||||||||| || ||||||| Sbjct: 220 gtttccccatgaagcagggtgtgcttacttctggacgtgtccgccttctcctccacaggg 279 Query: 350 gcacaccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtcc 409 | || || ||||||||||| | |||||||||| ||||||||||||| || ||||| |||| Sbjct: 280 gtaccccctgcttccgtggatatggcaggcgtgatggtgagcgcagaaggaagtcagtcc 339 Query: 410 gtggttgcattgtcagccaaga 431 |||||||||||||||||||||| Sbjct: 340 gtggttgcattgtcagccaaga 361
>dbj|AK121621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045B01, full insert sequence Length = 1018 Score = 289 bits (146), Expect = 4e-75 Identities = 278/322 (86%) Strand = Plus / Plus Query: 110 ccatgaagctgaacatcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatg 169 |||||||| | |||||||| ||||| ||||| ||||||||||||||| |||||||||||| Sbjct: 38 ccatgaagttcaacatcgccaacccgaccaccgggtgccagaagaagctcgagatcgatg 97 Query: 170 acgaccagaagctgcggaacctttatgacaagagaatctcccaggaggtagttggtgatc 229 ||||||||||||| ||| ||||||||||||| ||||||||||| || ||||||| Sbjct: 98 acgaccagaagctccgggcattttatgacaagaggatctcccaggaagtcagtggtgatg 157 Query: 230 ttctgggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagg 289 ||| || || ||||||||||| ||| | |||||||||||||| |||||||| ||||| | Sbjct: 158 ctcttggcgaagaattcaagggctatgtattcaagatcatgggaggctgtgacaagcaag 217 Query: 290 gcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggg 349 | ||||| |||||||| || ||||| |||||||| |||||||||||||| || ||||||| Sbjct: 218 gtttccccatgaagcagggtgtgcttacttctggacgtgtccgccttctcctccacaggg 277 Query: 350 gcacaccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtcc 409 | || || ||||||||||| | |||||||||| ||||||||||||| || ||||| |||| Sbjct: 278 gtaccccctgcttccgtggatatggcaggcgtgatggtgagcgcagaaggaagtcagtcc 337 Query: 410 gtggttgcattgtcagccaaga 431 |||||||||||||||||||||| Sbjct: 338 gtggttgcattgtcagccaaga 359
>dbj|AK061827.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-C07, full insert sequence Length = 990 Score = 289 bits (146), Expect = 4e-75 Identities = 278/322 (86%) Strand = Plus / Plus Query: 110 ccatgaagctgaacatcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatg 169 |||||||| | |||||||| ||||| ||||| ||||||||||||||| |||||||||||| Sbjct: 37 ccatgaagttcaacatcgccaacccgaccaccgggtgccagaagaagctcgagatcgatg 96 Query: 170 acgaccagaagctgcggaacctttatgacaagagaatctcccaggaggtagttggtgatc 229 ||||||||||||| ||| ||||||||||||| ||||||||||| || ||||||| Sbjct: 97 acgaccagaagctccgggcattttatgacaagaggatctcccaggaagtcagtggtgatg 156 Query: 230 ttctgggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagg 289 ||| || || ||||||||||| ||| | |||||||||||||| |||||||| ||||| | Sbjct: 157 ctcttggcgaagaattcaagggctatgtattcaagatcatgggaggctgtgacaagcaag 216 Query: 290 gcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggg 349 | ||||| |||||||| || ||||| |||||||| |||||||||||||| || ||||||| Sbjct: 217 gtttccccatgaagcagggtgtgcttacttctggacgtgtccgccttctcctccacaggg 276 Query: 350 gcacaccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtcc 409 | || || ||||||||||| | |||||||||| ||||||||||||| || ||||| |||| Sbjct: 277 gtaccccctgcttccgtggatatggcaggcgtgatggtgagcgcagaaggaagtcagtcc 336 Query: 410 gtggttgcattgtcagccaaga 431 |||||||||||||||||||||| Sbjct: 337 gtggttgcattgtcagccaaga 358
>gb|DQ191669.1| Solanum tuberosum ribosomal protein S6-like protein mRNA, complete cds Length = 1032 Score = 180 bits (91), Expect = 3e-42 Identities = 261/315 (82%), Gaps = 2/315 (0%) Strand = Plus / Plus Query: 112 atgaagctgaacatcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatgac 171 |||||| | ||||| |||||||| || || ||||||||||||||| ||||||||||||| Sbjct: 52 atgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgat 111 Query: 172 gaccagaagctgcggaacctt-tatgacaagagaatctcccaggaggtagttggtgatct 230 |||||||| || || | | || ||||||||||| |||||||||||||| || ||| Sbjct: 112 gaccagaaactccg-agctttctatgacaagaggatctcccaggaggttagcggagatgc 170 Query: 231 tctgggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcaggg 290 | |||| ||||| |||||||| || | |||||||| ||||| || ||||| ||||| || Sbjct: 171 tttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaagg 230 Query: 291 cttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacagggg 350 |||||||||||||| |||||| ||||| | || ||||| || ||||||||| |||| || Sbjct: 231 tttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgctttacagagg 290 Query: 351 cacaccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccg 410 ||| ||||||||||||||| ||| ||||||||||||||||| || || ||||| ||||| Sbjct: 291 cactccttgcttccgtggtcatggtaggcgtaatggtgagcgaagaaggaagtctgtccg 350 Query: 411 tggttgcattgtcag 425 ||| ||||| ||||| Sbjct: 351 tggatgcatcgtcag 365
>gb|BT014365.1| Lycopersicon esculentum clone 133651F, mRNA sequence Length = 1065 Score = 172 bits (87), Expect = 6e-40 Identities = 260/315 (82%), Gaps = 2/315 (0%) Strand = Plus / Plus Query: 112 atgaagctgaacatcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatgac 171 |||||| | ||||| |||||||| || || ||||||||||||||| ||||||||||||| Sbjct: 72 atgaagttcaacattgcgaacccgactactgggtgccagaagaagctcgagatcgatgat 131 Query: 172 gaccagaagctgcggaacctt-tatgacaagagaatctcccaggaggtagttggtgatct 230 |||||||| || || | | || | ||||||||| |||||||||||||| || ||| Sbjct: 132 gaccagaaactccg-agctttctttgacaagaggatctcccaggaggttagcggagatgc 190 Query: 231 tctgggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcaggg 290 | |||| ||||| |||||||| || | |||||||| ||||| || ||||| ||||| || Sbjct: 191 tttgggagaggagttcaagggatacgttttcaagattatgggaggatgtgacaagcaagg 250 Query: 291 cttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacagggg 350 |||||||||||||| |||||| ||||| | || ||||| || |||||||||||||| || Sbjct: 251 tttcccaatgaagcagggagtgttaactccaggccgtgttcgtcttctgcttcacagagg 310 Query: 351 cacaccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccg 410 ||| |||||||||||||||| ||| |||||||||||||| | | || ||||| ||||| Sbjct: 311 cactccttgcttccgtggttatggtaggcgtaatggtgaaagacgaaggaagtctgtccg 370 Query: 411 tggttgcattgtcag 425 ||| ||||||||||| Sbjct: 371 tggatgcattgtcag 385
>gb|AY453394.1| Glycine max ribosomal protein S6 (RPS6) mRNA, complete cds Length = 1020 Score = 165 bits (83), Expect = 1e-37 Identities = 263/323 (81%) Strand = Plus / Plus Query: 112 atgaagctgaacatcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatgac 171 |||||| | ||||||||||| |||||||| || |||||||||||| |||||||||| ||| Sbjct: 63 atgaagttcaacatcgcgaatcccaccactggatgccagaagaagctcgagatcgacgac 122 Query: 172 gaccagaagctgcggaacctttatgacaagagaatctcccaggaggtagttggtgatctt 231 || | ||| ||||| ||| |||||||| ||||| |||||||| | || ||| Sbjct: 123 gatctgaaactgcgagcattttgggacaagaggatctcacaggaggtcatcggagatgca 182 Query: 232 ctgggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggc 291 || ||||||||||| ||||| ||| ||||||| || | || || ||||| || || || Sbjct: 183 ctcggtgaggaatttaagggctatgtcttcaaaattaccggaggttgtgacaaacaagga 242 Query: 292 ttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggc 351 || ||||||||||| |||||||| ||| |||| ||||| | ||| ||||||||||||| Sbjct: 243 tttccaatgaagcagggagtgctgactcctggtcgtgttagacttttgcttcacagggga 302 Query: 352 acaccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgt 411 || |||||||||||||| | ||| ||||||||||| ||||| ||||||||||| || ||| Sbjct: 303 actccttgcttccgtggatatggaaggcgtaatggagagcgtaggagaaagtctgttcgt 362 Query: 412 ggttgcattgtcagccaagacct 434 || ||||||||||||| |||||| Sbjct: 363 gggtgcattgtcagcccagacct 385
>gb|BT014411.1| Lycopersicon esculentum clone 133718F, mRNA sequence Length = 1067 Score = 149 bits (75), Expect = 9e-33 Identities = 165/195 (84%) Strand = Plus / Plus Query: 233 tgggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggct 292 |||||||||| ||||||||||| | |||||||| ||||| || ||||| ||||| || | Sbjct: 185 tgggtgaggagttcaagggttacgttttcaagataatgggaggatgtgacaagcaagggt 244 Query: 293 tcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggca 352 |||| ||||| || |||||| ||||| |||| ||||| |||||| |||| ||||| || | Sbjct: 245 tccctatgaaacagggagtgttaactcctggccgtgttcgccttttgctccacagaggta 304 Query: 353 caccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtg 412 | |||||||||||||||| ||| ||||| ||||| |||||||| || ||||| ||||||| Sbjct: 305 ctccttgcttccgtggttatggtaggcgaaatggagagcgcagaaggaagtctgtccgtg 364 Query: 413 gttgcattgtcagcc 427 | ||||||||||||| Sbjct: 365 gatgcattgtcagcc 379 Score = 48.1 bits (24), Expect = 0.024 Identities = 57/68 (83%) Strand = Plus / Plus Query: 112 atgaagctgaacatcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatgac 171 |||||| | ||||| ||||| |||||||| ||||||||||| ||| | || |||||||| Sbjct: 64 atgaagttcaacattgcgaatcccaccactgggtgccagaaaaagcttgaaatcgatgat 123 Query: 172 gaccagaa 179 || ||||| Sbjct: 124 gatcagaa 131
>gb|DQ241846.1| Solanum tuberosum clone 186G09 unknown mRNA Length = 1056 Score = 141 bits (71), Expect = 2e-30 Identities = 164/195 (84%) Strand = Plus / Plus Query: 233 tgggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggct 292 |||||||||| ||||| ||||| | |||||||| ||||| || ||||| ||||| || | Sbjct: 169 tgggtgaggagttcaaaggttacgttttcaagataatgggaggatgtgacaagcaagggt 228 Query: 293 tcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggca 352 ||||||||||||| |||||| ||||| |||| ||||| |||||| |||| |||| || | Sbjct: 229 tcccaatgaagcagggagtgttaactcctggccgtgttcgccttttgctctacagaggta 288 Query: 353 caccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtg 412 | ||||||||||||||| ||| ||||| ||||| |||||||| || ||||| ||||||| Sbjct: 289 ctccttgcttccgtggtcatggtaggcgaaatggagagcgcagaaggaagtctgtccgtg 348 Query: 413 gttgcattgtcagcc 427 | ||||||||||||| Sbjct: 349 gatgcattgtcagcc 363
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 127 bits (64), Expect = 3e-26 Identities = 100/112 (89%) Strand = Plus / Plus Query: 239 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 298 ||||||||||||| ||| |||||||||||||||| || ||||| |||||||| ||||| | Sbjct: 25670681 aggaattcaagggctatgtcttcaagatcatggggggttgtgacaagcagggtttcccta 25670740 Query: 299 tgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacagggg 350 ||||||| |||||||| ||| |||| |||||||||||||| ||||||||||| Sbjct: 25670741 tgaagcagggagtgctcactgctggacgtgtccgccttcttcttcacagggg 25670792 Score = 115 bits (58), Expect = 1e-22 Identities = 79/86 (91%) Strand = Plus / Plus Query: 349 ggcacaccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtc 408 |||||||||||||||||||| | |||||||||| |||||||||||||||| ||||| ||| Sbjct: 25670871 ggcacaccttgcttccgtgggtatggcaggcgtgatggtgagcgcaggaggaagtctgtc 25670930 Query: 409 cgtggttgcattgtcagccaagacct 434 ||||||||||| |||||||| ||||| Sbjct: 25670931 cgtggttgcatcgtcagccaggacct 25670956 Score = 101 bits (51), Expect = 2e-18 Identities = 60/63 (95%) Strand = Plus / Plus Query: 121 aacatcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatgacgaccagaag 180 |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct: 25669523 aacatcgcgaacccgaccaccgggtgccagaagaagctcgagatcgatgacgaccagaag 25669582 Query: 181 ctg 183 ||| Sbjct: 25669583 ctg 25669585
>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0594D10 Length = 143200 Score = 127 bits (64), Expect = 3e-26 Identities = 100/112 (89%) Strand = Plus / Plus Query: 239 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 298 ||||||||||||| ||| |||||||||||||||| || ||||| |||||||| ||||| | Sbjct: 124654 aggaattcaagggctatgtcttcaagatcatggggggttgtgacaagcagggtttcccta 124713 Query: 299 tgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacagggg 350 ||||||| |||||||| ||| |||| |||||||||||||| ||||||||||| Sbjct: 124714 tgaagcagggagtgctcactgctggacgtgtccgccttcttcttcacagggg 124765 Score = 115 bits (58), Expect = 1e-22 Identities = 79/86 (91%) Strand = Plus / Plus Query: 349 ggcacaccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtc 408 |||||||||||||||||||| | |||||||||| |||||||||||||||| ||||| ||| Sbjct: 124844 ggcacaccttgcttccgtgggtatggcaggcgtgatggtgagcgcaggaggaagtctgtc 124903 Query: 409 cgtggttgcattgtcagccaagacct 434 ||||||||||| |||||||| ||||| Sbjct: 124904 cgtggttgcatcgtcagccaggacct 124929 Score = 101 bits (51), Expect = 2e-18 Identities = 60/63 (95%) Strand = Plus / Plus Query: 121 aacatcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatgacgaccagaag 180 |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct: 123496 aacatcgcgaacccgaccaccgggtgccagaagaagctcgagatcgatgacgaccagaag 123555 Query: 181 ctg 183 ||| Sbjct: 123556 ctg 123558
>emb|AJ277533.1|AOF277533 Asparagus officinalis mRNA for S6 ribosomal protein (rps6 gene) Length = 959 Score = 127 bits (64), Expect = 3e-26 Identities = 244/304 (80%) Strand = Plus / Plus Query: 124 atcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatgacgaccagaagctg 183 ||||| || |||||||| ||||||||||| ||| ||||||| || |||||||||||||| Sbjct: 38 atcgccaatcccaccactgggtgccagaaaaagctcgagattgacgacgaccagaagctc 97 Query: 184 cggaacctttatgacaagagaatctcccaggaggtagttggtgatcttctgggtgaggaa 243 || ||||||| ||| | || || || || || ||||||| ||| || ||||| Sbjct: 98 cgtgcattttatgataagcgtatttcacaagaagtcagtggtgatgctcttggcgaggag 157 Query: 244 ttcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaatgaag 303 |||||||| ||| | ||||| |||||||| || ||||| |||||||| || || |||||| Sbjct: 158 ttcaagggatatgttttcaaaatcatgggaggttgtgacaagcagggttttcccatgaag 217 Query: 304 caaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggcacaccttgcttc 363 || |||||||| ||| |||| || |||||||| |||| ||||| || |||||||||||| Sbjct: 218 cagggagtgctgactcctggtcgcgtccgcctattgctgcacagaggaacaccttgcttc 277 Query: 364 cgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtc 423 ||||||| ||| ||||| || || ||||| || || ||||| || ||||| |||||||| Sbjct: 278 cgtggttatggaaggcgcaacggagagcgaagaaggaagtctgtgcgtgggtgcattgtt 337 Query: 424 agcc 427 |||| Sbjct: 338 agcc 341
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 111 bits (56), Expect = 2e-21 Identities = 98/112 (87%) Strand = Plus / Minus Query: 239 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 298 ||||||||||||| ||| | |||||||||||||| |||||||| ||||| || ||||| | Sbjct: 15461567 aggaattcaagggctatgtattcaagatcatgggaggctgtgacaagcaaggtttcccca 15461508 Query: 299 tgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacagggg 350 ||||||| || ||||| |||||||| |||||||||||||| || |||||||| Sbjct: 15461507 tgaagcagggtgtgcttacttctggacgtgtccgccttctcctccacagggg 15461456 Score = 99.6 bits (50), Expect = 7e-18 Identities = 68/74 (91%) Strand = Plus / Minus Query: 358 tgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgc 417 ||||||||||| | |||||||||| ||||||||||||| || ||||| |||||||||||| Sbjct: 15461353 tgcttccgtggatatggcaggcgtgatggtgagcgcagaaggaagtcagtccgtggttgc 15461294 Query: 418 attgtcagccaaga 431 |||||||||||||| Sbjct: 15461293 attgtcagccaaga 15461280 Score = 93.7 bits (47), Expect = 5e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 121 aacatcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatgacgaccagaag 180 |||||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct: 15462529 aacatcgccaacccgaccaccgggtgccagaagaagctcgagatcgatgacgaccagaag 15462470 Query: 181 ctg 183 ||| Sbjct: 15462469 ctg 15462467 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 191 tttatgacaagagaatctcccagga 215 ||||||||||||| ||||||||||| Sbjct: 15461701 tttatgacaagaggatctcccagga 15461677
>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete sequence Length = 164705 Score = 111 bits (56), Expect = 2e-21 Identities = 98/112 (87%) Strand = Plus / Plus Query: 239 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 298 ||||||||||||| ||| | |||||||||||||| |||||||| ||||| || ||||| | Sbjct: 39959 aggaattcaagggctatgtattcaagatcatgggaggctgtgacaagcaaggtttcccca 40018 Query: 299 tgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacagggg 350 ||||||| || ||||| |||||||| |||||||||||||| || |||||||| Sbjct: 40019 tgaagcagggtgtgcttacttctggacgtgtccgccttctcctccacagggg 40070 Score = 99.6 bits (50), Expect = 7e-18 Identities = 68/74 (91%) Strand = Plus / Plus Query: 358 tgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgc 417 ||||||||||| | |||||||||| ||||||||||||| || ||||| |||||||||||| Sbjct: 40173 tgcttccgtggatatggcaggcgtgatggtgagcgcagaaggaagtcagtccgtggttgc 40232 Query: 418 attgtcagccaaga 431 |||||||||||||| Sbjct: 40233 attgtcagccaaga 40246 Score = 93.7 bits (47), Expect = 5e-16 Identities = 59/63 (93%) Strand = Plus / Plus Query: 121 aacatcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatgacgaccagaag 180 |||||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct: 38997 aacatcgccaacccgaccaccgggtgccagaagaagctcgagatcgatgacgaccagaag 39056 Query: 181 ctg 183 ||| Sbjct: 39057 ctg 39059 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 191 tttatgacaagagaatctcccagga 215 ||||||||||||| ||||||||||| Sbjct: 39825 tttatgacaagaggatctcccagga 39849
>gb|AY293401.1| Brassica napus ribosomal protein S6 (RPS6) mRNA, complete cds Length = 980 Score = 111 bits (56), Expect = 2e-21 Identities = 254/320 (79%) Strand = Plus / Plus Query: 112 atgaagctgaacatcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatgac 171 |||||| | ||| |||| ||||| ||||| || |||||||||||| |||||||||| || Sbjct: 61 atgaagtttaacgtcgcaaacccaaccactggttgccagaagaagctcgagatcgacgat 120 Query: 172 gaccagaagctgcggaacctttatgacaagagaatctcccaggaggtagttggtgatctt 231 |||||||| || || ||||||| |||||| |||| || || || ||| ||| | Sbjct: 121 gaccagaaactccgtgcgttttatgataagagactctctcaagaagtcagtggagatgct 180 Query: 232 ctgggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggc 291 |||| ||||| |||||||| || || |||||||||||||| || ||||| ||||| ||| Sbjct: 181 ttgggcgaggagttcaagggatacattttcaagatcatgggagggtgtgacaagcaaggc 240 Query: 292 ttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggc 351 |||||||||||||| ||||| ||||| | || ||||| |||||| |||||||| | || Sbjct: 241 ttcccaatgaagcagggagttttaactccaggccgtgttcgccttttgcttcaccgagga 300 Query: 352 acaccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgt 411 || ||||||||| | || || ||| | | ||| ||| | || |||||||| || ||| Sbjct: 301 actccttgcttcagaggacacggaaggaggactggagagaggagaagaaagtctgttcgt 360 Query: 412 ggttgcattgtcagccaaga 431 |||||||||||||||||||| Sbjct: 361 ggttgcattgtcagccaaga 380
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 111 bits (56), Expect = 2e-21 Identities = 98/112 (87%) Strand = Plus / Minus Query: 239 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 298 ||||||||||||| ||| | |||||||||||||| |||||||| ||||| || ||||| | Sbjct: 15456101 aggaattcaagggctatgtattcaagatcatgggaggctgtgacaagcaaggtttcccca 15456042 Query: 299 tgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacagggg 350 ||||||| || ||||| |||||||| |||||||||||||| || |||||||| Sbjct: 15456041 tgaagcagggtgtgcttacttctggacgtgtccgccttctcctccacagggg 15455990 Score = 99.6 bits (50), Expect = 7e-18 Identities = 68/74 (91%) Strand = Plus / Minus Query: 358 tgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgc 417 ||||||||||| | |||||||||| ||||||||||||| || ||||| |||||||||||| Sbjct: 15455887 tgcttccgtggatatggcaggcgtgatggtgagcgcagaaggaagtcagtccgtggttgc 15455828 Query: 418 attgtcagccaaga 431 |||||||||||||| Sbjct: 15455827 attgtcagccaaga 15455814 Score = 93.7 bits (47), Expect = 5e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 121 aacatcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatgacgaccagaag 180 |||||||| ||||| ||||| ||||||||||||||| ||||||||||||||||||||||| Sbjct: 15457063 aacatcgccaacccgaccaccgggtgccagaagaagctcgagatcgatgacgaccagaag 15457004 Query: 181 ctg 183 ||| Sbjct: 15457003 ctg 15457001 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 191 tttatgacaagagaatctcccagga 215 ||||||||||||| ||||||||||| Sbjct: 15456235 tttatgacaagaggatctcccagga 15456211
>emb|X68050.1|NTRPS6 N.tabacum mRNA for ribosomal protein S6 Length = 804 Score = 109 bits (55), Expect = 8e-21 Identities = 151/183 (82%) Strand = Plus / Minus Query: 245 tcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaatgaagc 304 |||| |||||| | |||||||| ||||| || ||||| |||||||| || |||||||||| Sbjct: 804 tcaaaggttatgtgttcaagattatgggaggatgtgacaagcaggggtttccaatgaagc 745 Query: 305 aaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggcacaccttgcttcc 364 | ||||| ||||| | || ||||| |||||| |||| || | ||||| ||||| |||| Sbjct: 744 agggagttttaactccaggccgtgttcgccttttgctgtaccgcggcactccttgtttcc 685 Query: 365 gtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtca 424 | || | ||| ||| | |||||||||||||| |||||||| |||||||| |||||||||| Sbjct: 684 gggggtatggtaggagaaatggtgagcgcagaagaaagtctgtccgtggatgcattgtca 625 Query: 425 gcc 427 ||| Sbjct: 624 gcc 622
>dbj|AK109085.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-H09, full insert sequence Length = 1049 Score = 95.6 bits (48), Expect = 1e-16 Identities = 69/76 (90%) Strand = Plus / Plus Query: 110 ccatgaagctgaacatcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatg 169 |||||||||| ||||| || |||||||||||||| ||||||||||| ||||||| |||| Sbjct: 61 ccatgaagctcaacattgcctaccccaccacggggcgccagaagaagctcgagattgatg 120 Query: 170 acgaccagaagctgcg 185 |||||||||||||||| Sbjct: 121 acgaccagaagctgcg 136 Score = 40.1 bits (20), Expect = 5.9 Identities = 65/80 (81%) Strand = Plus / Plus Query: 235 ggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttc 294 ||||| || |||||||| || |||||||||||||||| || || |||||||| ||| Sbjct: 186 ggtgacgagttcaagggctacgtcttcaagatcatgggaggacaggacaagcagggtttc 245 Query: 295 ccaatgaagcaaggagtgct 314 || |||||||| || ||||| Sbjct: 246 cccatgaagcagggtgtgct 265
>emb|AJ010227.1|CAR010227 Cicer arietinum mRNA for 40S ribosomal protein S6, partial Length = 920 Score = 93.7 bits (47), Expect = 5e-16 Identities = 158/195 (81%) Strand = Plus / Plus Query: 233 tgggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggct 292 |||| |||||||| || || ||| | |||||||||| ||||| ||||| || || || | Sbjct: 12 tgggcgaggaatttaaaggctatgttttcaagatcactggtgggtgtgacaaacaaggat 71 Query: 293 tcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggca 352 ||||||||||||| |||||||| || |||| ||||| || || ||||||| || || | Sbjct: 72 tcccaatgaagcagggagtgctgacacctggtcgtgttcgactcttgcttcatagaggaa 131 Query: 353 caccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtg 412 | ||||| |||||||| | ||| ||||| ||||| ||||| || |||||||| || |||| Sbjct: 132 ctccttgtttccgtggatatggaaggcgcaatggagagcgtagaagaaagtctgttcgtg 191 Query: 413 gttgcattgtcagcc 427 | ||||||||||||| Sbjct: 192 gatgcattgtcagcc 206
>dbj|D78497.1| Brassica rapa mRNA for putative ribosomal protein, partial cds Length = 426 Score = 93.7 bits (47), Expect = 5e-16 Identities = 161/199 (80%) Strand = Plus / Plus Query: 233 tgggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggct 292 |||| ||||| |||||||| || | ||||||||||||||||| ||||| ||||| || | Sbjct: 71 tgggcgaggagttcaaggggtacgttttcaagatcatgggtgggtgtgacaagcaaggtt 130 Query: 293 tcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcacaggggca 352 |||| |||||||| ||||| ||||| |||| ||||| |||||| |||||||| | || | Sbjct: 131 tccctatgaagcagggagttttaactcctggccgtgttcgccttttgcttcaccgaggaa 190 Query: 353 caccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtg 412 | |||||||| | || ||| ||| | | ||| ||| | || |||||||| || |||| Sbjct: 191 ctccttgctttagaggacatgggaggaggactggagagaggagaagaaagtctgttcgtg 250 Query: 413 gttgcattgtcagccaaga 431 ||||||||||||||||||| Sbjct: 251 gttgcattgtcagccaaga 269
>dbj|AP006076.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT19M07, TM0114, complete sequence Length = 94533 Score = 89.7 bits (45), Expect = 7e-15 Identities = 66/73 (90%) Strand = Plus / Plus Query: 355 ccttgcttccgtggttttggcaggcgtaatggtgagcgcaggagaaagtccgtccgtggt 414 |||||||||||||| | ||| ||||||||||| ||||||||||||||||| || ||||| Sbjct: 18674 ccttgcttccgtggatatggaaggcgtaatggagagcgcaggagaaagtctgtacgtgga 18733 Query: 415 tgcattgtcagcc 427 ||||||||||||| Sbjct: 18734 tgcattgtcagcc 18746 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 121 aacatcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatgacgacc 175 ||||||||||| || ||||| ||||||||||||||| |||| |||||||| |||| Sbjct: 17775 aacatcgcgaatccaaccactgggtgccagaagaagctcgaaatcgatgatgacc 17829
>ref|NM_121074.2| Arabidopsis thaliana EMB3010; structural constituent of ribosome AT5G10360 (EMB3010) mRNA, complete cds Length = 1095 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 238 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 297 |||||||||||||| || | |||||||||||||| || ||||| ||||| || |||||| Sbjct: 212 gaggaattcaagggatacgtattcaagatcatgggaggatgtgacaagcaaggtttccca 271 Query: 298 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 345 ||||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 272 atgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 319 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Plus Query: 398 gaaagtccgtccgtggttgcattgtcagccaagacctgtc 437 ||||||| ||||||||||||||||| |||| |||||||| Sbjct: 372 gaaagtctgtccgtggttgcattgtgagccctgacctgtc 411
>gb|AY093783.1| Arabidopsis thaliana AT5g10360/F12B17_290 mRNA, complete cds Length = 750 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 238 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 297 |||||||||||||| || | |||||||||||||| || ||||| ||||| || |||||| Sbjct: 127 gaggaattcaagggatacgtattcaagatcatgggaggatgtgacaagcaaggtttccca 186 Query: 298 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 345 ||||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 187 atgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 234 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Plus Query: 398 gaaagtccgtccgtggttgcattgtcagccaagacctgtc 437 ||||||| ||||||||||||||||| |||| |||||||| Sbjct: 287 gaaagtctgtccgtggttgcattgtgagccctgacctgtc 326
>gb|AY057634.1| Arabidopsis thaliana AT5g10360/F12B17_290 mRNA, complete cds Length = 993 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 238 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 297 |||||||||||||| || | |||||||||||||| || ||||| ||||| || |||||| Sbjct: 212 gaggaattcaagggatacgtattcaagatcatgggaggatgtgacaagcaaggtttccca 271 Query: 298 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 345 ||||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 272 atgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 319 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Plus Query: 398 gaaagtccgtccgtggttgcattgtcagccaagacctgtc 437 ||||||| ||||||||||||||||| |||| |||||||| Sbjct: 372 gaaagtctgtccgtggttgcattgtgagccctgacctgtc 411
>gb|AY045594.1| Arabidopsis thaliana AT5g10360/F12B17_290 mRNA, complete cds Length = 993 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 238 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 297 |||||||||||||| || | |||||||||||||| || ||||| ||||| || |||||| Sbjct: 212 gaggaattcaagggatacgtattcaagatcatgggaggatgtgacaagcaaggtttccca 271 Query: 298 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 345 ||||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 272 atgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 319 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Plus Query: 398 gaaagtccgtccgtggttgcattgtcagccaagacctgtc 437 ||||||| ||||||||||||||||| |||| |||||||| Sbjct: 372 gaaagtctgtccgtggttgcattgtgagccctgacctgtc 411
>emb|BX832002.1|CNS0A26R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH45ZC11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 969 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 238 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 297 |||||||||||||| || | |||||||||||||| || ||||| ||||| || |||||| Sbjct: 195 gaggaattcaagggatacgtattcaagatcatgggaggatgtgacaagcaaggtttccca 254 Query: 298 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 345 ||||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 255 atgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 302 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Plus Query: 398 gaaagtccgtccgtggttgcattgtcagccaagacctgtc 437 ||||||| ||||||||||||||||| |||| |||||||| Sbjct: 355 gaaagtctgtccgtggttgcattgtgagccctgacctgtc 394
>emb|BX830696.1|CNS0A0OB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS15ZE05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 947 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 238 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 297 |||||||||||||| || | |||||||||||||| || ||||| ||||| || |||||| Sbjct: 193 gaggaattcaagggatacgtattcaagatcatgggaggatgtgacaagcaaggtttccca 252 Query: 298 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 345 ||||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 253 atgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 300 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Plus Query: 398 gaaagtccgtccgtggttgcattgtcagccaagacctgtc 437 ||||||| ||||||||||||||||| |||| |||||||| Sbjct: 353 gaaagtctgtccgtggttgcattgtgagccctgacctgtc 392
>emb|Y14052.1|ATY14052 Arabidopsis thaliana mRNA for ribosomal protein S6 Length = 957 Score = 87.7 bits (44), Expect = 3e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 238 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 297 |||||||||||||| || | |||||||||||||| || ||||| ||||| || |||||| Sbjct: 127 gaggaattcaagggatacgtattcaagatcatgggaggatgtgacaagcaaggtttccca 186 Query: 298 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 345 ||||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 187 atgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 234 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Plus Query: 398 gaaagtccgtccgtggttgcattgtcagccaagacctgtc 437 ||||||| ||||||||||||||||| |||| |||||||| Sbjct: 287 gaaagtctgtccgtggttgcattgtgagccctgacctgtc 326
>emb|AL353995.1|ATF12B17 Arabidopsis thaliana DNA chromosome 5, BAC clone F12B17 (ESSA project) Length = 113053 Score = 85.7 bits (43), Expect = 1e-13 Identities = 91/107 (85%) Strand = Plus / Plus Query: 239 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 298 ||||||||||||| || | |||||||||||||| || ||||| ||||| || ||||||| Sbjct: 105321 aggaattcaagggatacgtattcaagatcatgggaggatgtgacaagcaaggtttcccaa 105380 Query: 299 tgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 345 |||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 105381 tgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 105427 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Plus Query: 398 gaaagtccgtccgtggttgcattgtcagccaagacctgtc 437 ||||||| ||||||||||||||||| |||| |||||||| Sbjct: 105577 gaaagtctgtccgtggttgcattgtgagccctgacctgtc 105616
>emb|BX829995.1|CNS0A1FC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB52ZB07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 981 Score = 79.8 bits (40), Expect = 7e-12 Identities = 91/108 (84%) Strand = Plus / Plus Query: 238 gaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttccca 297 |||||||||||||| || | |||||||||||||| || ||| | ||||| || |||||| Sbjct: 193 gaggaattcaagggatacgtattcaagatcatgggaggatgttacaagcaaggtttccca 252 Query: 298 atgaagcaaggagtgctaacttctgggcgtgtccgccttctgcttcac 345 ||||| |||||||| || ||| | ||||||||||| ||| |||||||| Sbjct: 253 atgaaacaaggagttctcactccagggcgtgtccgtcttttgcttcac 300 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Plus Query: 398 gaaagtccgtccgtggttgcattgtcagccaagacctgtc 437 ||||||| ||||||||||||||||| |||| |||||||| Sbjct: 353 gaaagtctgtccgtggttgcattgtgagccctgacctgtc 392
>ref|NM_119319.3| Arabidopsis thaliana RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome AT4G31700 (RPS6) mRNA, complete cds Length = 993 Score = 77.8 bits (39), Expect = 3e-11 Identities = 222/283 (78%) Strand = Plus / Plus Query: 145 tgccagaagaaggtcgagatcgatgacgaccagaagctgcggaacctttatgacaagaga 204 |||||||||||| |||||||||| || |||||||| || || |||| ||||||||| Sbjct: 45 tgccagaagaagctcgagatcgacgatgaccagaaactacgtgcgttttacgacaagaga 104 Query: 205 atctcccaggaggtagttggtgatcttctgggtgaggaattcaagggttatatcttcaag 264 ||||| || || || ||| ||| | |||| ||||| ||||| || || | |||||| Sbjct: 105 atctctcaagaagtcagtggagatgctttgggcgaggagttcaaaggatacgttttcaag 164 Query: 265 atcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaacttctggg 324 |||| |||||| || |||||||| || |||||||||||||| ||||| | ||| | || Sbjct: 165 atcaagggtggttgcgataagcaaggtttcccaatgaagcagggagttttgactccaggc 224 Query: 325 cgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcaggcgtaat 384 ||||| |||||| |||||||| | || || ||||||||| | || ||| ||| | | | Sbjct: 225 cgtgttcgccttttgcttcaccgaggaactccttgcttcagaggacatggaaggagaact 284 Query: 385 ggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 427 |||||| | || |||||||| || |||||||||||||| |||| Sbjct: 285 ggtgagaggagaagaaagtctgttcgtggttgcattgtgagcc 327
>gb|BT000693.1| Arabidopsis thaliana clone RAFL07-09-P18 (R10989) putative ribosomal protein S6 (At4g31700) mRNA, complete cds Length = 962 Score = 77.8 bits (39), Expect = 3e-11 Identities = 222/283 (78%) Strand = Plus / Plus Query: 145 tgccagaagaaggtcgagatcgatgacgaccagaagctgcggaacctttatgacaagaga 204 |||||||||||| |||||||||| || |||||||| || || |||| ||||||||| Sbjct: 47 tgccagaagaagctcgagatcgacgatgaccagaaactacgtgcgttttacgacaagaga 106 Query: 205 atctcccaggaggtagttggtgatcttctgggtgaggaattcaagggttatatcttcaag 264 ||||| || || || ||| ||| | |||| ||||| ||||| || || | |||||| Sbjct: 107 atctctcaagaagtcagtggagatgctttgggcgaggagttcaaaggatacgttttcaag 166 Query: 265 atcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaacttctggg 324 |||| |||||| || |||||||| || |||||||||||||| ||||| | ||| | || Sbjct: 167 atcaagggtggttgcgataagcaaggtttcccaatgaagcagggagttttgactccaggc 226 Query: 325 cgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcaggcgtaat 384 ||||| |||||| |||||||| | || || ||||||||| | || ||| ||| | | | Sbjct: 227 cgtgttcgccttttgcttcaccgaggaactccttgcttcagaggacatggaaggagaact 286 Query: 385 ggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 427 |||||| | || |||||||| || |||||||||||||| |||| Sbjct: 287 ggtgagaggagaagaaagtctgttcgtggttgcattgtgagcc 329
>gb|AY113983.1| Arabidopsis thaliana putative ribosomal protein S6 (At4g31700) mRNA, complete cds Length = 784 Score = 77.8 bits (39), Expect = 3e-11 Identities = 222/283 (78%) Strand = Plus / Plus Query: 145 tgccagaagaaggtcgagatcgatgacgaccagaagctgcggaacctttatgacaagaga 204 |||||||||||| |||||||||| || |||||||| || || |||| ||||||||| Sbjct: 34 tgccagaagaagctcgagatcgacgatgaccagaaactacgtgcgttttacgacaagaga 93 Query: 205 atctcccaggaggtagttggtgatcttctgggtgaggaattcaagggttatatcttcaag 264 ||||| || || || ||| ||| | |||| ||||| ||||| || || | |||||| Sbjct: 94 atctctcaagaagtcagtggagatgctttgggcgaggagttcaaaggatacgttttcaag 153 Query: 265 atcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaacttctggg 324 |||| |||||| || |||||||| || |||||||||||||| ||||| | ||| | || Sbjct: 154 atcaagggtggttgcgataagcaaggtttcccaatgaagcagggagttttgactccaggc 213 Query: 325 cgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcaggcgtaat 384 ||||| |||||| |||||||| | || || ||||||||| | || ||| ||| | | | Sbjct: 214 cgtgttcgccttttgcttcaccgaggaactccttgcttcagaggacatggaaggagaact 273 Query: 385 ggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 427 |||||| | || |||||||| || |||||||||||||| |||| Sbjct: 274 ggtgagaggagaagaaagtctgttcgtggttgcattgtgagcc 316
>gb|AY050803.1| Arabidopsis thaliana putative ribosomal protein S6 (At4g31700) mRNA, complete cds Length = 989 Score = 77.8 bits (39), Expect = 3e-11 Identities = 222/283 (78%) Strand = Plus / Plus Query: 145 tgccagaagaaggtcgagatcgatgacgaccagaagctgcggaacctttatgacaagaga 204 |||||||||||| |||||||||| || |||||||| || || |||| ||||||||| Sbjct: 41 tgccagaagaagctcgagatcgacgatgaccagaaactacgtgcgttttacgacaagaga 100 Query: 205 atctcccaggaggtagttggtgatcttctgggtgaggaattcaagggttatatcttcaag 264 ||||| || || || ||| ||| | |||| ||||| ||||| || || | |||||| Sbjct: 101 atctctcaagaagtcagtggagatgctttgggcgaggagttcaaaggatacgttttcaag 160 Query: 265 atcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaacttctggg 324 |||| |||||| || |||||||| || |||||||||||||| ||||| | ||| | || Sbjct: 161 atcaagggtggttgcgataagcaaggtttcccaatgaagcagggagttttgactccaggc 220 Query: 325 cgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcaggcgtaat 384 ||||| |||||| |||||||| | || || ||||||||| | || ||| ||| | | | Sbjct: 221 cgtgttcgccttttgcttcaccgaggaactccttgcttcagaggacatggaaggagaact 280 Query: 385 ggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 427 |||||| | || |||||||| || |||||||||||||| |||| Sbjct: 281 ggtgagaggagaagaaagtctgttcgtggttgcattgtgagcc 323
>emb|BX826399.1|CNS0A4KZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB21ZD05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 938 Score = 77.8 bits (39), Expect = 3e-11 Identities = 222/283 (78%) Strand = Plus / Plus Query: 145 tgccagaagaaggtcgagatcgatgacgaccagaagctgcggaacctttatgacaagaga 204 |||||||||||| |||||||||| || |||||||| || || |||| ||||||||| Sbjct: 30 tgccagaagaagctcgagatcgacgatgaccagaaactacgtgcgttttacgacaagaga 89 Query: 205 atctcccaggaggtagttggtgatcttctgggtgaggaattcaagggttatatcttcaag 264 ||||| || || || ||| ||| | |||| ||||| ||||| || || | |||||| Sbjct: 90 atctctcaagaagtcagtggagatgctttgggcgaggagttcaaaggatacgttttcaag 149 Query: 265 atcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaacttctggg 324 |||| |||||| || |||||||| || |||||||||||||| ||||| | ||| | || Sbjct: 150 atcaagggtggttgcgataagcaaggtttcccaatgaagcagggagttttgactccaggc 209 Query: 325 cgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcaggcgtaat 384 ||||| |||||| |||||||| | || || ||||||||| | || ||| ||| | | | Sbjct: 210 cgtgttcgccttttgcttcaccgaggaactccttgcttcagaggacatggaaggagaact 269 Query: 385 ggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 427 |||||| | || |||||||| || |||||||||||||| |||| Sbjct: 270 ggtgagaggagaagaaagtctgttcgtggttgcattgtgagcc 312
>gb|AF034217.1|AF034217 Arabidopsis thaliana ribosomal protein S6 (rps6) mRNA, complete cds Length = 945 Score = 77.8 bits (39), Expect = 3e-11 Identities = 222/283 (78%) Strand = Plus / Plus Query: 145 tgccagaagaaggtcgagatcgatgacgaccagaagctgcggaacctttatgacaagaga 204 |||||||||||| |||||||||| || |||||||| || || |||| ||||||||| Sbjct: 37 tgccagaagaagctcgagatcgacgatgaccagaaactacgtgcgttttacgacaagaga 96 Query: 205 atctcccaggaggtagttggtgatcttctgggtgaggaattcaagggttatatcttcaag 264 ||||| || || || ||| ||| | |||| ||||| ||||| || || | |||||| Sbjct: 97 atctctcaagaagtcagtggagatgctttgggcgaggagttcaaaggatacgttttcaag 156 Query: 265 atcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaacttctggg 324 |||| |||||| || |||||||| || |||||||||||||| ||||| | ||| | || Sbjct: 157 atcaagggtggttgcgataagcaaggtttcccaatgaagcagggagttttgactccaggc 216 Query: 325 cgtgtccgccttctgcttcacaggggcacaccttgcttccgtggttttggcaggcgtaat 384 ||||| |||||| |||||||| | || || ||||||||| | || ||| ||| | | | Sbjct: 217 cgtgttcgccttttgcttcaccgaggaactccttgcttcagaggacatggaaggagaact 276 Query: 385 ggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 427 |||||| | || |||||||| || |||||||||||||| |||| Sbjct: 277 ggtgagaggagaagaaagtctgttcgtggttgcattgtgagcc 319
>gb|AC155341.1| Brassica rapa subsp. pekinensis chromosome 6 clone KBrH004D11, complete sequence Length = 106476 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 125 tcgcgaaccccaccacggggtgccagaagaaggtcgagatcgatgacgaccagaagctg 183 ||||||| || ||||| || |||||||||||| ||||||||||||||||||| |||||| Sbjct: 90219 tcgcgaatccgaccactggatgccagaagaagctcgagatcgatgacgaccaaaagctg 90161 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 394 aggagaaagtccgtccgtggttgcattgtcagccaagacct 434 ||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 89689 aggagaaagtctgtccgcggttgcattgtcagccaagacct 89649 Score = 58.0 bits (29), Expect = 3e-05 Identities = 86/105 (81%) Strand = Plus / Minus Query: 259 ttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaact 318 |||||||||||||| || || || ||||| |||||||| ||||| || ||||| || || Sbjct: 89824 ttcaagatcatgggaggatgcgacaagcaaggcttcccgatgaaacagggagttctcacc 89765 Query: 319 tctgggcgtgtccgccttctgcttcacaggggcacaccttgcttc 363 |||| |||||||| || |||||||| | ||||| ||||||||| Sbjct: 89764 cctggtcgtgtccgtctcttgcttcaccgaggcactccttgcttc 89720
>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75 Length = 196242 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 259 ttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaact 318 |||||||||| |||||| || |||||||| || |||||||||||||| ||||| | ||| Sbjct: 113058 ttcaagatcaagggtggttgcgataagcaaggtttcccaatgaagcagggagttttgact 112999 Query: 319 tctgggcgtgtccgccttctgcttcac 345 | || ||||| |||||| |||||||| Sbjct: 112998 ccaggccgtgttcgccttttgcttcac 112972 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Minus Query: 145 tgccagaagaaggtcgagatcgatgacgaccagaa 179 |||||||||||| |||||||||| || |||||||| Sbjct: 113539 tgccagaagaagctcgagatcgacgatgaccagaa 113505 Score = 40.1 bits (20), Expect = 5.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 384 tggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 427 ||||||| | || |||||||| || |||||||||||||| |||| Sbjct: 112824 tggtgagaggagaagaaagtctgttcgtggttgcattgtgagcc 112781
>emb|AL031004.1|ATF28M20 Arabidopsis thaliana DNA chromosome 4, BAC clone F28M20 (ESSAII project) Length = 90902 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 259 ttcaagatcatgggtggctgtgataagcagggcttcccaatgaagcaaggagtgctaact 318 |||||||||| |||||| || |||||||| || |||||||||||||| ||||| | ||| Sbjct: 40213 ttcaagatcaagggtggttgcgataagcaaggtttcccaatgaagcagggagttttgact 40272 Query: 319 tctgggcgtgtccgccttctgcttcac 345 | || ||||| |||||| |||||||| Sbjct: 40273 ccaggccgtgttcgccttttgcttcac 40299 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Plus Query: 145 tgccagaagaaggtcgagatcgatgacgaccagaa 179 |||||||||||| |||||||||| || |||||||| Sbjct: 39732 tgccagaagaagctcgagatcgacgatgaccagaa 39766 Score = 40.1 bits (20), Expect = 5.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 384 tggtgagcgcaggagaaagtccgtccgtggttgcattgtcagcc 427 ||||||| | || |||||||| || |||||||||||||| |||| Sbjct: 40447 tggtgagaggagaagaaagtctgttcgtggttgcattgtgagcc 40490
>ref|XM_329546.1| Neurospora crassa OR74A hypothetical protein (NCU08502.1) partial mRNA Length = 720 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 385 ggtgagcgcaggagaaagtccgtccgtggttgcat 419 |||||||||| ||||||||||||||| |||||||| Sbjct: 268 ggtgagcgcaagagaaagtccgtccgcggttgcat 302
>ref|XM_958338.1| Neurospora crassa OR74A hypothetical protein (NCU08502.1) partial mRNA Length = 720 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 385 ggtgagcgcaggagaaagtccgtccgtggttgcat 419 |||||||||| ||||||||||||||| |||||||| Sbjct: 268 ggtgagcgcaagagaaagtccgtccgcggttgcat 302
>gb|AC146855.5| Medicago truncatula clone mth2-16c23, complete sequence Length = 137979 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 376 aggcgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcagccaagacct 434 ||||||||||| ||||| || || ||||| || ||||| ||||||||||||| |||||| Sbjct: 135731 aggcgtaatggagagcgaagaaggaagtctgttcgtgggtgcattgtcagcccagacct 135673 Score = 50.1 bits (25), Expect = 0.006 Identities = 79/97 (81%) Strand = Plus / Minus Query: 239 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 298 ||||||| ||||| ||| ||||||| |||| ||||| ||||| || || ||||| |||| Sbjct: 136820 aggaatttaagggatatgtcttcaaaatcactggtggatgtgacaaacaaggctttccaa 136761 Query: 299 tgaagcaaggagtgctaacttctgggcgtgtccgcct 335 ||||||| || ||| |||| |||| ||||| ||||| Sbjct: 136760 tgaagcagggtgtgttaacccctggtcgtgttcgcct 136724
>emb|BX842594.1| Neurospora crassa DNA linkage group II BAC clone B18P7 Length = 95637 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 385 ggtgagcgcaggagaaagtccgtccgtggttgcat 419 |||||||||| ||||||||||||||| |||||||| Sbjct: 44726 ggtgagcgcaagagaaagtccgtccgcggttgcat 44692
>gb|AC149801.3| Medicago truncatula chromosome 2 BAC clone mth2-32i15, complete sequence Length = 96221 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 376 aggcgtaatggtgagcgcaggagaaagtccgtccgtggttgcattgtcagccaagacct 434 ||||||||||| ||||| || || ||||| || ||||| ||||||||||||| |||||| Sbjct: 93822 aggcgtaatggagagcgaagaaggaagtctgttcgtgggtgcattgtcagcccagacct 93880 Score = 50.1 bits (25), Expect = 0.006 Identities = 79/97 (81%) Strand = Plus / Plus Query: 239 aggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttcccaa 298 ||||||| ||||| ||| ||||||| |||| ||||| ||||| || || ||||| |||| Sbjct: 92733 aggaatttaagggatatgtcttcaaaatcactggtggatgtgacaaacaaggctttccaa 92792 Query: 299 tgaagcaaggagtgctaacttctgggcgtgtccgcct 335 ||||||| || ||| |||| |||| ||||| ||||| Sbjct: 92793 tgaagcagggtgtgttaacccctggtcgtgttcgcct 92829
>ref|XM_447041.1| Candida glabrata CBS138, CAGL0H05643g partial mRNA Length = 711 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 235 ggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttc 294 ||||| |||||||||||||| | ||||||||||| ||||| || ||||| || ||| Sbjct: 124 ggtgatgaattcaagggttacaccttcaagatcaccggtggtaacgacaagcaaggtttc 183 Query: 295 ccaatgaagcaagg 308 |||||||||||||| Sbjct: 184 ccaatgaagcaagg 197
>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence Length = 1050361 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 235 ggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttc 294 ||||| |||||||||||||| | ||||||||||| ||||| || ||||| || ||| Sbjct: 560268 ggtgatgaattcaagggttacaccttcaagatcaccggtggtaacgacaagcaaggtttc 560327 Query: 295 ccaatgaagcaagg 308 |||||||||||||| Sbjct: 560328 ccaatgaagcaagg 560341
>ref|XM_360693.1| Magnaporthe grisea 70-15 hypothetical protein (MG03236.4) partial mRNA Length = 720 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 384 tggtgagcgcaggagaaagtccgtccgtggttg 416 ||||||||||| ||||||||||||||| ||||| Sbjct: 267 tggtgagcgcaagagaaagtccgtccgcggttg 299
>ref|XM_660817.1| Cryptosporidium hominis TU502 ribosomal protein S6e (Chro.20458) partial mRNA Length = 666 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 233 tgggtgaggaattcaagggttatat 257 ||||||||||||||||||||||||| Sbjct: 122 tgggtgaggaattcaagggttatat 146
>ref|XM_626605.1| Cryptosporidium parvum Iowa II 40S ribosomal protein S6 (cgd2_4260), partial mRNA Length = 678 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 233 tgggtgaggaattcaagggttatat 257 ||||||||||||||||||||||||| Sbjct: 134 tgggtgaggaattcaagggttatat 158
>ref|XM_746654.1| Aspergillus fumigatus Af293 40S ribosomal protein S6 (Afu4g10800) partial mRNA Length = 714 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 235 ggtgaggaattcaagggttatatcttcaagat 266 ||||| |||||||||||||| ||||||||||| Sbjct: 124 ggtgatgaattcaagggttacatcttcaagat 155
>ref|XM_380810.1| Gibberella zeae PH-1 chromosome 1 conserved hypothetical protein (FG00634.1) partial mRNA Length = 714 Score = 48.1 bits (24), Expect = 0.024 Identities = 33/36 (91%) Strand = Plus / Plus Query: 384 tggtgagcgcaggagaaagtccgtccgtggttgcat 419 ||||||||||| ||||||||| |||||||| ||||| Sbjct: 261 tggtgagcgcaagagaaagtctgtccgtggctgcat 296
>ref|NM_061034.3| Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-6) (rps-6) mRNA, complete cds Length = 806 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 388 gagcgcaggagaaagtccgtccgtggttgcat 419 ||||||| |||||||||||||||||| ||||| Sbjct: 290 gagcgcaagagaaagtccgtccgtggatgcat 321 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Plus Query: 283 aagcagggcttcccaatgaagcaagga 309 |||||||| |||||||||||||||||| Sbjct: 191 aagcagggattcccaatgaagcaagga 217
>emb|BX832457.1|CNS0A241 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH74ZH01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 689 Score = 48.1 bits (24), Expect = 0.024 Identities = 36/40 (90%) Strand = Plus / Plus Query: 398 gaaagtccgtccgtggttgcattgtcagccaagacctgtc 437 ||||||| ||||||||||||||||| |||| |||||||| Sbjct: 33 gaaagtctgtccgtggttgcattgtgagccctgacctgtc 72
>emb|AL132902.4|CEY71A12B Caenorhabditis elegans YAC Y71A12B, complete sequence Length = 137184 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 388 gagcgcaggagaaagtccgtccgtggttgcat 419 ||||||| |||||||||||||||||| ||||| Sbjct: 84063 gagcgcaagagaaagtccgtccgtggatgcat 84094 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Plus Query: 283 aagcagggcttcccaatgaagcaagga 309 |||||||| |||||||||||||||||| Sbjct: 83964 aagcagggattcccaatgaagcaagga 83990
>emb|AL928597.19| Mouse DNA sequence from clone RP23-373N5 on chromosome 4, complete sequence Length = 163961 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Plus Query: 269 tgggtggctgtgataagcagggct 292 |||||||||||||||||||||||| Sbjct: 150128 tgggtggctgtgataagcagggct 150151
>gb|AF402814.1| Ictalurus punctatus 40S ribosomal protein S6 mRNA, complete cds Length = 819 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Plus Query: 279 tgataagcagggcttcccaatgaagca 305 |||||||||||||||||| |||||||| Sbjct: 192 tgataagcagggcttccccatgaagca 218
>ref|NM_205225.1| Gallus gallus ribosomal protein S6 (RPS6), mRNA Length = 894 Score = 46.1 bits (23), Expect = 0.095 Identities = 53/63 (84%) Strand = Plus / Plus Query: 279 tgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttct 338 |||||| || |||||||| |||||||| || || || ||| ||| |||||||||||||| Sbjct: 187 tgataaacaaggcttccccatgaagcagggtgtccttactcatggacgtgtccgccttct 246 Query: 339 gct 341 ||| Sbjct: 247 gct 249
>emb|X81968.1|GGRPRTS6 G.gallus mRNA for ribosomal protein S6 Length = 894 Score = 46.1 bits (23), Expect = 0.095 Identities = 53/63 (84%) Strand = Plus / Plus Query: 279 tgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttct 338 |||||| || |||||||| |||||||| || || || ||| ||| |||||||||||||| Sbjct: 187 tgataaacaaggcttccccatgaagcagggtgtccttactcatggacgtgtccgccttct 246 Query: 339 gct 341 ||| Sbjct: 247 gct 249
>gb|AF208228.1|AF208228 Gallus gallus ribosomal protein S6 mRNA, partial cds Length = 814 Score = 46.1 bits (23), Expect = 0.095 Identities = 53/63 (84%) Strand = Plus / Plus Query: 279 tgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttct 338 |||||| || |||||||| |||||||| || || || ||| ||| |||||||||||||| Sbjct: 164 tgataaacaaggcttccccatgaagcagggtgtccttactcatggacgtgtccgccttct 223 Query: 339 gct 341 ||| Sbjct: 224 gct 226
>ref|XM_654476.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1964.2), mRNA Length = 714 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Plus Query: 235 ggtgaggaattcaagggttatatcttcaagatca 268 ||||| |||||||||||||| |||||||||||| Sbjct: 124 ggtgacgaattcaagggttacctcttcaagatca 157
>ref|XM_449621.1| Candida glabrata CBS138 hypothetical protein (CAGL0M06303g) partial mRNA Length = 711 Score = 44.1 bits (22), Expect = 0.38 Identities = 61/74 (82%) Strand = Plus / Plus Query: 235 ggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttc 294 ||||| |||||||||||||| | ||||||||| | ||||| || ||||| || ||| Sbjct: 124 ggtgatgaattcaagggttacaccttcaagattaccggtggtaacgacaagcaaggtttc 183 Query: 295 ccaatgaagcaagg 308 |||||||||||||| Sbjct: 184 ccaatgaagcaagg 197
>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence Length = 1400893 Score = 44.1 bits (22), Expect = 0.38 Identities = 61/74 (82%) Strand = Plus / Minus Query: 235 ggtgaggaattcaagggttatatcttcaagatcatgggtggctgtgataagcagggcttc 294 ||||| |||||||||||||| | ||||||||| | ||||| || ||||| || ||| Sbjct: 654593 ggtgatgaattcaagggttacaccttcaagattaccggtggtaacgacaagcaaggtttc 654534 Query: 295 ccaatgaagcaagg 308 |||||||||||||| Sbjct: 654533 ccaatgaagcaagg 654520
>gb|BC061628.1| Xenopus tropicalis 40S ribosomal protein S6, mRNA (cDNA clone MGC:76307 IMAGE:5379757), complete cds Length = 846 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 279 tgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttct 338 ||||||||| ||||| || ||||| || |||||||||||| ||| ||||| || ||||| Sbjct: 198 tgataagcaaggctttcccatgaaacagggagtgctaactcatggccgtgttcgtcttct 257 Query: 339 g 339 | Sbjct: 258 g 258
>emb|AL445208.11| Human DNA sequence from clone RP11-104N3 on chromosome 6, complete sequence Length = 60742 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 aggaggtagttggtgatcttc 232 ||||||||||||||||||||| Sbjct: 14137 aggaggtagttggtgatcttc 14157
>emb|AL353193.7| Human DNA sequence from clone RP11-137F15 on chromosome 20 Contains a pseudogene similar to a TCEAL1 (transcription elongation factor A (SII)-like 1, the 5' part of the ATRN gene for attractin with dipeptidylpeptidase IV activity and a CpG island, complete sequence Length = 51371 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 283 aagcagggcttcccaatgaag 303 ||||||||||||||||||||| Sbjct: 27357 aagcagggcttcccaatgaag 27377
>emb|Z54308.1|SPAC13G6 S.pombe chromosome I cosmid c13G6 Length = 33481 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Minus Query: 383 atggtgagcgcaggagaaagtccgtccgtggttgcattgtcagccaaga 431 |||||||||||| | | || || |||||||||||||| ||| ||||||| Sbjct: 16137 atggtgagcgcaagcgtaaatctgtccgtggttgcatcgtcggccaaga 16089
>emb|BX571659.1| Wolinella succinogenes, complete genome; segment 3/7 Length = 349970 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 ccctcttcgcccaaaacccta 22 ||||||||||||||||||||| Sbjct: 244197 ccctcttcgcccaaaacccta 244177
>gb|BC082345.1| Xenopus tropicalis 40S ribosomal protein S6, mRNA (cDNA clone MGC:79740 IMAGE:6983051), complete cds Length = 835 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 279 tgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttct 338 ||||||||| ||||| || ||||| || |||||||||||| ||| ||||| || ||||| Sbjct: 191 tgataagcaaggctttcccatgaaacagggagtgctaactcatggccgtgttcgtcttct 250 Query: 339 g 339 | Sbjct: 251 g 251
>ref|NM_001018234.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC13G6.07c), partial mRNA Length = 720 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 383 atggtgagcgcaggagaaagtccgtccgtggttgcattgtcagccaaga 431 |||||||||||| | | || || |||||||||||||| ||| ||||||| Sbjct: 266 atggtgagcgcaagcgtaaatctgtccgtggttgcatcgtcggccaaga 314
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 agaagaaggtcgagatcgatg 169 ||||||||||||||||||||| Sbjct: 10410333 agaagaaggtcgagatcgatg 10410353
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 ccgccggcgagctcgtgccgc 102 ||||||||||||||||||||| Sbjct: 12391861 ccgccggcgagctcgtgccgc 12391881
>ref|NM_203821.1| Xenopus tropicalis 40S ribosomal protein S6 (MGC76307), mRNA Length = 846 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 279 tgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttct 338 ||||||||| ||||| || ||||| || |||||||||||| ||| ||||| || ||||| Sbjct: 198 tgataagcaaggctttcccatgaaacagggagtgctaactcatggccgtgttcgtcttct 257 Query: 339 g 339 | Sbjct: 258 g 258
>gb|AF429980.1| Spodoptera frugiperda ribosomal protein S6 mRNA, complete cds Length = 842 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 283 aagcagggcttcccaatgaagcaaggagt 311 |||||||||||||| |||||||| ||||| Sbjct: 190 aagcagggcttccccatgaagcagggagt 218
>dbj|AP005091.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1104_G11 Length = 140093 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 agaagaaggtcgagatcgatg 169 ||||||||||||||||||||| Sbjct: 118038 agaagaaggtcgagatcgatg 118058
>dbj|AP005704.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0448B03 Length = 147748 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 agaagaaggtcgagatcgatg 169 ||||||||||||||||||||| Sbjct: 10712 agaagaaggtcgagatcgatg 10732
>dbj|AP003211.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0011P19 Length = 150811 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 ccgccggcgagctcgtgccgc 102 ||||||||||||||||||||| Sbjct: 77506 ccgccggcgagctcgtgccgc 77526
>emb|X02746.1|SCRPS102 Yeast gene for ribosomal protein S10-2 Length = 1500 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 235 ggtgaggaattcaagggttatatcttcaagatc 267 ||||| |||||||||||||| ||||||||||| Sbjct: 673 ggtgacgaattcaagggttacgtcttcaagatc 705
>emb|CR760876.2| Xenopus tropicalis finished cDNA, clone TTpA006h06 Length = 824 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 279 tgataagcagggcttcccaatgaagcaaggagtgctaacttctgggcgtgtccgccttct 338 ||||||||| ||||| || ||||| || |||||||||||| ||| ||||| || ||||| Sbjct: 185 tgataagcaaggctttcccatgaaacagggagtgctaactcatggccgtgttcgtcttct 244 Query: 339 g 339 | Sbjct: 245 g 245
>gb|DQ332961.1| Synthetic construct Saccharomyces cerevisiae clone FLH113093.01X RPS6A gene, complete sequence Length = 1105 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 235 ggtgaggaattcaagggttatatcttcaagatc 267 ||||| |||||||||||||| ||||||||||| Sbjct: 518 ggtgacgaattcaagggttacgtcttcaagatc 550
>gb|U43281.1|SCU43281 Saccharomyces cerevisiae chromosome XVI cosmid 8059/8047 Length = 38669 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 235 ggtgaggaattcaagggttatatcttcaagatc 267 ||||| |||||||||||||| ||||||||||| Sbjct: 29482 ggtgacgaattcaagggttacgtcttcaagatc 29450
>gb|M36382.1|YSPRPS6A S.pombe ribosomal protein S6 (rps6) gene, complete cds Length = 1940 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 383 atggtgagcgcaggagaaagtccgtccgtggttgcattgtcagccaaga 431 |||||||||||| | | || || |||||||||||||| ||| ||||||| Sbjct: 760 atggtgagcgcaagcgtaaatctgtccgtggttgcatcgtcggccaaga 808
>gb|AY308769.1| Bothus lunatus recombinase activating gene-1 (RAG1) gene, partial cds Length = 1455 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 ggaggtagttggtgatcttc 232 |||||||||||||||||||| Sbjct: 1315 ggaggtagttggtgatcttc 1296
>ref|XM_475463.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 468 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 tcgccgccggcgagctcgtg 98 |||||||||||||||||||| Sbjct: 83 tcgccgccggcgagctcgtg 102
>gb|AY190727.1| Pagrus major S6 ribosomal protein mRNA, partial cds Length = 564 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 283 aagcagggcttcccaatgaagcaaggagtgct 314 |||||||||||||| |||||||| || ||||| Sbjct: 146 aagcagggcttccccatgaagcagggtgtgct 177
>gb|AY430215.1| Spirinchus thaleichthys recombination activating protein 1 (RAG1) gene, partial cds Length = 1472 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 ggaggtagttggtgatcttc 232 |||||||||||||||||||| Sbjct: 1335 ggaggtagttggtgatcttc 1316
>gb|AY380539.1| Salangichthys microdon recombination-activating protein 1 (RAG1) gene, partial cds Length = 1506 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 ggaggtagttggtgatcttc 232 |||||||||||||||||||| Sbjct: 1342 ggaggtagttggtgatcttc 1323
>gb|AY380538.1| Hypomesus olidus recombination-activating protein 1 (RAG1) gene, partial cds Length = 1555 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 ggaggtagttggtgatcttc 232 |||||||||||||||||||| Sbjct: 1364 ggaggtagttggtgatcttc 1345
>gb|AY380537.1| Thaleichthys pacificus recombination-activating protein 1 (RAG1) gene, partial cds Length = 1556 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 ggaggtagttggtgatcttc 232 |||||||||||||||||||| Sbjct: 1365 ggaggtagttggtgatcttc 1346
>gb|AY380536.1| Plecoglossus altivelis recombination-activating protein 1 (RAG1) gene, partial cds Length = 1556 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 ggaggtagttggtgatcttc 232 |||||||||||||||||||| Sbjct: 1365 ggaggtagttggtgatcttc 1346
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 tgctcgccgccggcgagctcgtgc 99 ||||||||||||| |||||||||| Sbjct: 1404772 tgctcgccgccggagagctcgtgc 1404795
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 aggtcgagatcgatgacgac 174 |||||||||||||||||||| Sbjct: 2210306 aggtcgagatcgatgacgac 2210325
>ref|NM_012652.1| Rattus norvegicus solute carrier family 9, member 1 (Slc9a1), mRNA Length = 4581 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 aggtagttggtgatcttctg 234 |||||||||||||||||||| Sbjct: 2824 aggtagttggtgatcttctg 2805
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06, complete sequence Length = 187651 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 tcgccgccggcgagctcgtg 98 |||||||||||||||||||| Sbjct: 54039 tcgccgccggcgagctcgtg 54020
>ref|XM_455035.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E24090g predicted mRNA Length = 711 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 235 ggtgaggaattcaagggttatatcttcaagat 266 ||||| |||||||||||||| |||||||||| Sbjct: 124 ggtgatgaattcaagggttacgtcttcaagat 155
>gb|AY459341.1| Oryza sativa (japonica cultivar-group) clone CL031105.6 R2R3-MYB gene region Length = 58956 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 tcgccgccggcgagctcgtg 98 |||||||||||||||||||| Sbjct: 26859 tcgccgccggcgagctcgtg 26878
>ref|NM_016981.1| Mus musculus solute carrier family 9 (sodium/hydrogen exchanger), member 1 (Slc9a1), mRNA Length = 4126 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 aggtagttggtgatcttctg 234 |||||||||||||||||||| Sbjct: 2378 aggtagttggtgatcttctg 2359
>gb|BC052708.1| Mus musculus solute carrier family 9 (sodium/hydrogen exchanger), member 1, mRNA (cDNA clone MGC:64648 IMAGE:5702902), complete cds Length = 3907 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 aggtagttggtgatcttctg 234 |||||||||||||||||||| Sbjct: 2717 aggtagttggtgatcttctg 2698
>gb|BC051431.1| Mus musculus solute carrier family 9 (sodium/hydrogen exchanger), member 1, mRNA (cDNA clone MGC:58902 IMAGE:6529306), complete cds Length = 3989 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 aggtagttggtgatcttctg 234 |||||||||||||||||||| Sbjct: 2182 aggtagttggtgatcttctg 2163
>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2234072 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 235 ggtgaggaattcaagggttatatcttcaagat 266 ||||| |||||||||||||| |||||||||| Sbjct: 2142829 ggtgatgaattcaagggttacgtcttcaagat 2142860
>gb|AC101986.10| Mus musculus chromosome 7, clone RP24-353K18, complete sequence Length = 187803 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ctgggtgaggaattcaaggg 251 |||||||||||||||||||| Sbjct: 16174 ctgggtgaggaattcaaggg 16155
>gb|AC158574.6| Mus musculus chromosome 7, clone RP24-275O6, complete sequence Length = 160525 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 ctgggtgaggaattcaaggg 251 |||||||||||||||||||| Sbjct: 68236 ctgggtgaggaattcaaggg 68255
>dbj|AK154857.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630109M11 product:solute carrier family 9 (sodium/hydrogen exchanger), member 1, full insert sequence Length = 4191 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 aggtagttggtgatcttctg 234 |||||||||||||||||||| Sbjct: 2872 aggtagttggtgatcttctg 2853
>dbj|AK150135.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530135M05 product:solute carrier family 9 (sodium/hydrogen exchanger), member 1, full insert sequence Length = 4609 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 aggtagttggtgatcttctg 234 |||||||||||||||||||| Sbjct: 2838 aggtagttggtgatcttctg 2819
>dbj|AK162209.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420457F09 product:solute carrier family 9 (sodium/hydrogen exchanger), member 1, full insert sequence Length = 1624 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 aggtagttggtgatcttctg 234 |||||||||||||||||||| Sbjct: 166 aggtagttggtgatcttctg 147
>emb|AJ504414.1|KLA504414 Kluyveromyces lactis glr1 gene for putative glutathione oxidoreductase and partial rps6 gene for putative 40S ribosomal protein S6 Length = 3674 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 235 ggtgaggaattcaagggttatatcttcaagat 266 ||||| |||||||||||||| |||||||||| Sbjct: 3600 ggtgatgaattcaagggttacgtcttcaagat 3569
>gb|AY521658.1| Pseudopleuronectes americanus 40S ribosomal protein S6 (RPS6) mRNA, partial cds Length = 550 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 283 aagcagggcttcccaatgaagcaaggagtgct 314 |||||||||||||| |||||||| || ||||| Sbjct: 97 aagcagggcttccccatgaagcagggtgtgct 128
>gb|S53430.1| S10=ribosomal protein [Kluyveromyces marxianus, Genomic, 1894 nt] Length = 1894 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 235 ggtgaggaattcaagggttatatcttcaagat 266 ||||| |||||||||||||| |||||||||| Sbjct: 1219 ggtgatgaattcaagggttacgtcttcaagat 1250
>gb|BC004687.1| Mus musculus solute carrier family 9 (sodium/hydrogen exchanger), member 1, mRNA (cDNA clone IMAGE:3500839), partial cds Length = 1833 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 aggtagttggtgatcttctg 234 |||||||||||||||||||| Sbjct: 42 aggtagttggtgatcttctg 23
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 tcgccgccggcgagctcgtg 98 |||||||||||||||||||| Sbjct: 23985550 tcgccgccggcgagctcgtg 23985531
>gb|AC068715.5|AC068715 Homo sapiens chromosome 2 clone RP11-319N5, complete sequence Length = 161375 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 caatgaagcaaggagtgctaactt 319 |||||||||||||| ||||||||| Sbjct: 80580 caatgaagcaaggaatgctaactt 80603
>gb|AC157521.2| Mus musculus BAC clone RP23-103M13 from chromosome 15, complete sequence Length = 194306 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 gaatctcccaggaggtagtt 222 |||||||||||||||||||| Sbjct: 94900 gaatctcccaggaggtagtt 94881
>gb|AY130373.1| Petromyzon marinus ribosomal protein S6-like mRNA, partial sequence Length = 691 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 283 aagcagggcttcccaatgaagcaaggagtgct 314 |||||||||||||| |||||||| || ||||| Sbjct: 146 aagcagggcttccccatgaagcagggcgtgct 177
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ccgccggcgagctcgtgccg 101 |||||||||||||||||||| Sbjct: 6686409 ccgccggcgagctcgtgccg 6686428
>dbj|AK108193.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-C04, full insert sequence Length = 993 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 384 tggtgagcgcaggagaaagtccgtccgtggttgcat 419 ||||||||||| | | |||||||||||||| ||||| Sbjct: 317 tggtgagcgcaagcgcaagtccgtccgtggctgcat 352
>dbj|AK105230.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-F03, full insert sequence Length = 672 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 tcgccgccggcgagctcgtg 98 |||||||||||||||||||| Sbjct: 169 tcgccgccggcgagctcgtg 188
>gb|AF009665.1|AF009665 Oncorhynchus mykiss S6 ribosomal protein mRNA, complete cds Length = 805 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 283 aagcagggcttcccaatgaagcaaggagtgct 314 |||||||||||||| |||||||| || ||||| Sbjct: 175 aagcagggcttccccatgaagcagggtgtgct 206
>gb|M85299.1|RATNHEXI Rat sodium/hydrogen exchange protein-isoform 1 (NHE-1) mRNA, complete cds Length = 4581 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 aggtagttggtgatcttctg 234 |||||||||||||||||||| Sbjct: 2824 aggtagttggtgatcttctg 2805
>gb|U51112.1|MMU51112 Mus musculus Na+/H+ exchanger (NHE-1) mRNA, complete cds Length = 4126 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 aggtagttggtgatcttctg 234 |||||||||||||||||||| Sbjct: 2378 aggtagttggtgatcttctg 2359 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,918,791 Number of Sequences: 3902068 Number of extensions: 2918791 Number of successful extensions: 53715 Number of sequences better than 10.0: 122 Number of HSP's better than 10.0 without gapping: 120 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 53109 Number of HSP's gapped (non-prelim): 596 length of query: 437 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 415 effective length of database: 17,147,199,772 effective search space: 7116087905380 effective search space used: 7116087905380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
