ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast05a09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT016695.1| Zea mays clone Contig528 mRNA sequence Length = 1659 Score = 117 bits (59), Expect = 3e-23 Identities = 115/134 (85%) Strand = Plus / Plus Query: 227 gacaggcggctgcgcctcaatccgaatacggagcacaagccgcaggactactccgacgtg 286 |||||||||||||| || || || ||| |||| ||||||||| | |||||| ||||||| Sbjct: 293 gacaggcggctgcggctgaacccaaatgcggatcacaagccggaagactacagcgacgtg 352 Query: 287 cgcggcgagtacgcgccagccgtgtacagcgccctggagcggcacctcccgcctagcctn 346 ||||||||||||||||| |||||||||||||| || |||||||| ||||| || ||||| Sbjct: 353 cgcggcgagtacgcgccggccgtgtacagcgcactcgagcggcatctcccacccagcctc 412 Query: 347 ctcgaggccgaccg 360 |||| |||||||| Sbjct: 413 atcgatgccgaccg 426
>gb|AY108736.1| Zea mays PCO071010 mRNA sequence Length = 1278 Score = 117 bits (59), Expect = 3e-23 Identities = 115/134 (85%) Strand = Plus / Plus Query: 227 gacaggcggctgcgcctcaatccgaatacggagcacaagccgcaggactactccgacgtg 286 |||||||||||||| || || || ||| |||| ||||||||| | |||||| ||||||| Sbjct: 269 gacaggcggctgcggctgaacccaaatgcggatcacaagccggaagactacagcgacgtg 328 Query: 287 cgcggcgagtacgcgccagccgtgtacagcgccctggagcggcacctcccgcctagcctn 346 ||||||||||||||||| |||||||||||||| || |||||||| ||||| || ||||| Sbjct: 329 cgcggcgagtacgcgccggccgtgtacagcgcactcgagcggcatctcccacccagcctc 388 Query: 347 ctcgaggccgaccg 360 |||| |||||||| Sbjct: 389 atcgatgccgaccg 402
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 87.7 bits (44), Expect = 2e-14 Identities = 190/238 (79%), Gaps = 3/238 (1%) Strand = Plus / Plus Query: 99 ccatggctctagaggggcctgcggagcgacgggacgagggccagcagggagggatggcga 158 ||||||||||||| || || ||||||||||||||||||| |||| | | ||||| | Sbjct: 17390569 ccatggctctagacggccccgcggagcgacgggacgaggcccag---gccgcgatgggta 17390625 Query: 159 acgggaatggcgtggctccgccgccgtcgcgcacagccggccggccgtcgggcccggctg 218 | || || |||||||| |||||||||| ||| | ||||||||||| || || || | | Sbjct: 17390626 atggcaacggcgtggccccgccgccgttgcggccggccggccggccctccggggcgccgg 17390685 Query: 219 cgtactctgacaggcggctgcgcctcaatccgaatacggagcacaagccgcaggactact 278 ||| | | || |||||||||| | || || || | |||||||||||||||||||||| Sbjct: 17390686 cgtgcgcagatcggcggctgcggttgaaccccaacatggagcacaagccgcaggactaca 17390745 Query: 279 ccgacgtgcgcggcgagtacgcgccagccgtgtacagcgccctggagcggcacctccc 336 |||||| |||||||||||||| ||||| || ||||| || || ||| |||||||||| Sbjct: 17390746 gcgacgtccgcggcgagtacgcaccagctgtatacagtgcacttgagaggcacctccc 17390803
>dbj|AP003203.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1080D07 Length = 173856 Score = 87.7 bits (44), Expect = 2e-14 Identities = 190/238 (79%), Gaps = 3/238 (1%) Strand = Plus / Plus Query: 99 ccatggctctagaggggcctgcggagcgacgggacgagggccagcagggagggatggcga 158 ||||||||||||| || || ||||||||||||||||||| |||| | | ||||| | Sbjct: 156830 ccatggctctagacggccccgcggagcgacgggacgaggcccag---gccgcgatgggta 156886 Query: 159 acgggaatggcgtggctccgccgccgtcgcgcacagccggccggccgtcgggcccggctg 218 | || || |||||||| |||||||||| ||| | ||||||||||| || || || | | Sbjct: 156887 atggcaacggcgtggccccgccgccgttgcggccggccggccggccctccggggcgccgg 156946 Query: 219 cgtactctgacaggcggctgcgcctcaatccgaatacggagcacaagccgcaggactact 278 ||| | | || |||||||||| | || || || | |||||||||||||||||||||| Sbjct: 156947 cgtgcgcagatcggcggctgcggttgaaccccaacatggagcacaagccgcaggactaca 157006 Query: 279 ccgacgtgcgcggcgagtacgcgccagccgtgtacagcgccctggagcggcacctccc 336 |||||| |||||||||||||| ||||| || ||||| || || ||| |||||||||| Sbjct: 157007 gcgacgtccgcggcgagtacgcaccagctgtatacagtgcacttgagaggcacctccc 157064
>dbj|AP003144.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0507H06 Length = 136351 Score = 87.7 bits (44), Expect = 2e-14 Identities = 190/238 (79%), Gaps = 3/238 (1%) Strand = Plus / Plus Query: 99 ccatggctctagaggggcctgcggagcgacgggacgagggccagcagggagggatggcga 158 ||||||||||||| || || ||||||||||||||||||| |||| | | ||||| | Sbjct: 43961 ccatggctctagacggccccgcggagcgacgggacgaggcccag---gccgcgatgggta 44017 Query: 159 acgggaatggcgtggctccgccgccgtcgcgcacagccggccggccgtcgggcccggctg 218 | || || |||||||| |||||||||| ||| | ||||||||||| || || || | | Sbjct: 44018 atggcaacggcgtggccccgccgccgttgcggccggccggccggccctccggggcgccgg 44077 Query: 219 cgtactctgacaggcggctgcgcctcaatccgaatacggagcacaagccgcaggactact 278 ||| | | || |||||||||| | || || || | |||||||||||||||||||||| Sbjct: 44078 cgtgcgcagatcggcggctgcggttgaaccccaacatggagcacaagccgcaggactaca 44137 Query: 279 ccgacgtgcgcggcgagtacgcgccagccgtgtacagcgccctggagcggcacctccc 336 |||||| |||||||||||||| ||||| || ||||| || || ||| |||||||||| Sbjct: 44138 gcgacgtccgcggcgagtacgcaccagctgtatacagtgcacttgagaggcacctccc 44195
>dbj|AK106095.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B12, full insert sequence Length = 1628 Score = 87.7 bits (44), Expect = 2e-14 Identities = 190/238 (79%), Gaps = 3/238 (1%) Strand = Plus / Plus Query: 99 ccatggctctagaggggcctgcggagcgacgggacgagggccagcagggagggatggcga 158 ||||||||||||| || || ||||||||||||||||||| |||| | | ||||| | Sbjct: 156 ccatggctctagacggccccgcggagcgacgggacgaggcccag---gccgcgatgggta 212 Query: 159 acgggaatggcgtggctccgccgccgtcgcgcacagccggccggccgtcgggcccggctg 218 | || || |||||||| |||||||||| ||| | ||||||||||| || || || | | Sbjct: 213 atggcaacggcgtggccccgccgccgttgcggccggccggccggccctccggggcgccgg 272 Query: 219 cgtactctgacaggcggctgcgcctcaatccgaatacggagcacaagccgcaggactact 278 ||| | | || |||||||||| | || || || | |||||||||||||||||||||| Sbjct: 273 cgtgcgcagatcggcggctgcggttgaaccccaacatggagcacaagccgcaggactaca 332 Query: 279 ccgacgtgcgcggcgagtacgcgccagccgtgtacagcgccctggagcggcacctccc 336 |||||| |||||||||||||| ||||| || ||||| || || ||| |||||||||| Sbjct: 333 gcgacgtccgcggcgagtacgcaccagctgtatacagtgcacttgagaggcacctccc 390
>dbj|AK104357.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A03, full insert sequence Length = 1628 Score = 87.7 bits (44), Expect = 2e-14 Identities = 190/238 (79%), Gaps = 3/238 (1%) Strand = Plus / Plus Query: 99 ccatggctctagaggggcctgcggagcgacgggacgagggccagcagggagggatggcga 158 ||||||||||||| || || ||||||||||||||||||| |||| | | ||||| | Sbjct: 156 ccatggctctagacggccccgcggagcgacgggacgaggcccag---gccgcgatgggta 212 Query: 159 acgggaatggcgtggctccgccgccgtcgcgcacagccggccggccgtcgggcccggctg 218 | || || |||||||| |||||||||| ||| | ||||||||||| || || || | | Sbjct: 213 atggcaacggcgtggccccgccgccgttgcggccggccggccggccctccggggcgccgg 272 Query: 219 cgtactctgacaggcggctgcgcctcaatccgaatacggagcacaagccgcaggactact 278 ||| | | || |||||||||| | || || || | |||||||||||||||||||||| Sbjct: 273 cgtgcgcagatcggcggctgcggttgaaccccaacatggagcacaagccgcaggactaca 332 Query: 279 ccgacgtgcgcggcgagtacgcgccagccgtgtacagcgccctggagcggcacctccc 336 |||||| |||||||||||||| ||||| || ||||| || || ||| |||||||||| Sbjct: 333 gcgacgtccgcggcgagtacgcaccagctgtatacagtgcacttgagaggcacctccc 390
>dbj|AK065149.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B07, full insert sequence Length = 1643 Score = 87.7 bits (44), Expect = 2e-14 Identities = 190/238 (79%), Gaps = 3/238 (1%) Strand = Plus / Plus Query: 99 ccatggctctagaggggcctgcggagcgacgggacgagggccagcagggagggatggcga 158 ||||||||||||| || || ||||||||||||||||||| |||| | | ||||| | Sbjct: 157 ccatggctctagacggccccgcggagcgacgggacgaggcccag---gccgcgatgggta 213 Query: 159 acgggaatggcgtggctccgccgccgtcgcgcacagccggccggccgtcgggcccggctg 218 | || || |||||||| |||||||||| ||| | ||||||||||| || || || | | Sbjct: 214 atggcaacggcgtggccccgccgccgttgcggccggccggccggccctccggggcgccgg 273 Query: 219 cgtactctgacaggcggctgcgcctcaatccgaatacggagcacaagccgcaggactact 278 ||| | | || |||||||||| | || || || | |||||||||||||||||||||| Sbjct: 274 cgtgcgcagatcggcggctgcggttgaaccccaacatggagcacaagccgcaggactaca 333 Query: 279 ccgacgtgcgcggcgagtacgcgccagccgtgtacagcgccctggagcggcacctccc 336 |||||| |||||||||||||| ||||| || ||||| || || ||| |||||||||| Sbjct: 334 gcgacgtccgcggcgagtacgcaccagctgtatacagtgcacttgagaggcacctccc 391
>ref|NM_193705.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1215 Score = 83.8 bits (42), Expect = 4e-13 Identities = 188/236 (79%), Gaps = 3/236 (1%) Strand = Plus / Plus Query: 101 atggctctagaggggcctgcggagcgacgggacgagggccagcagggagggatggcgaac 160 ||||||||||| || || ||||||||||||||||||| |||| | | ||||| || Sbjct: 1 atggctctagacggccccgcggagcgacgggacgaggcccag---gccgcgatgggtaat 57 Query: 161 gggaatggcgtggctccgccgccgtcgcgcacagccggccggccgtcgggcccggctgcg 220 || || |||||||| |||||||||| ||| | ||||||||||| || || || | ||| Sbjct: 58 ggcaacggcgtggccccgccgccgttgcggccggccggccggccctccggggcgccggcg 117 Query: 221 tactctgacaggcggctgcgcctcaatccgaatacggagcacaagccgcaggactactcc 280 | | | || |||||||||| | || || || | |||||||||||||||||||||| | Sbjct: 118 tgcgcagatcggcggctgcggttgaaccccaacatggagcacaagccgcaggactacagc 177 Query: 281 gacgtgcgcggcgagtacgcgccagccgtgtacagcgccctggagcggcacctccc 336 ||||| |||||||||||||| ||||| || ||||| || || ||| |||||||||| Sbjct: 178 gacgtccgcggcgagtacgcaccagctgtatacagtgcacttgagaggcacctccc 233
>gb|AY495516.1| Eptesicus somalicus 12S ribosomal RNA, tRNA-Val, and 16S ribosomal RNA genes, complete sequence; mitochondrial Length = 2582 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 agtgagagacagcaaaaccct 27 ||||||||||||||||||||| Sbjct: 2014 agtgagagacagcaaaaccct 1994
>gb|AY495473.1| Hypsugo eisentrauti 12S ribosomal RNA, tRNA-Val, and 16S ribosomal RNA genes, complete sequence; mitochondrial Length = 2582 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 3 tgagagtgagagacagcaaaaccct 27 ||||||| ||||||||||||||||| Sbjct: 2017 tgagagtaagagacagcaaaaccct 1993
>gb|AC023792.12| Homo sapiens 3 BAC CTC-503A18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 64414 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 13 agacagcaaaaccctaattttcacc 37 ||||||||||||||||| ||||||| Sbjct: 12550 agacagcaaaaccctaagtttcacc 12574
>gb|AC135253.2| Homo sapiens 3 BAC RP11-324L7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154492 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 13 agacagcaaaaccctaattttcacc 37 ||||||||||||||||| ||||||| Sbjct: 30961 agacagcaaaaccctaagtttcacc 30985
>emb|AL138972.1|DMBR25B3 Drosophila melanogaster BAC clone BACR25B3 Length = 154329 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 gctccgccgccgtcgcgcaca 193 ||||||||||||||||||||| Sbjct: 137905 gctccgccgccgtcgcgcaca 137925
>emb|BX908776.14| Zebrafish DNA sequence from clone DKEY-88E12 in linkage group 3, complete sequence Length = 249946 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 cagcaaaaccctaattttcac 36 ||||||||||||||||||||| Sbjct: 8385 cagcaaaaccctaattttcac 8405
>gb|AC104140.5| Drosophila melanogaster X BAC RP98-9H13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 191342 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 gctccgccgccgtcgcgcaca 193 ||||||||||||||||||||| Sbjct: 93105 gctccgccgccgtcgcgcaca 93125
>emb|BX547935.12| Zebrafish DNA sequence from clone CH211-207C1 in linkage group 16, complete sequence Length = 195252 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 cagcaaaaccctaattttcac 36 ||||||||||||||||||||| Sbjct: 1279 cagcaaaaccctaattttcac 1259
>gb|AE005892.1| Caulobacter crescentus CB15 section 218 of 359 of the complete genome Length = 11477 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 cagccggccggccgtcgggcc 212 ||||||||||||||||||||| Sbjct: 8736 cagccggccggccgtcgggcc 8716
>gb|AC114477.2| Homo sapiens chromosome 3 clone RP11-1037D22, complete sequence Length = 179190 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 13 agacagcaaaaccctaattttcacc 37 ||||||||||||||||| ||||||| Sbjct: 137125 agacagcaaaaccctaagtttcacc 137149
>ref|NM_080313.2| Drosophila melanogaster egghead CG9659-RC, transcript variant C (egh), mRNA Length = 3575 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 gctccgccgccgtcgcgcaca 193 ||||||||||||||||||||| Sbjct: 205 gctccgccgccgtcgcgcaca 225
>gb|AY060595.1| Drosophila melanogaster GH01085 full length cDNA Length = 1408 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 gctccgccgccgtcgcgcaca 193 ||||||||||||||||||||| Sbjct: 142 gctccgccgccgtcgcgcaca 162
>gb|AY997855.1| Gilia capitata voucher Johnson 92-015 WS isocitrate dehydrogenase gene, exons K-N and partial cds Length = 842 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 19 caaaaccctaattttcaccca 39 ||||||||||||||||||||| Sbjct: 627 caaaaccctaattttcaccca 647
>gb|AF233288.1| Drosophila melanogaster WDS (wds) and egghead (egh) genes, complete cds Length = 18142 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 gctccgccgccgtcgcgcaca 193 ||||||||||||||||||||| Sbjct: 6579 gctccgccgccgtcgcgcaca 6599
>emb|AL591671.8| Zebrafish DNA sequence from clone BUSM1-107D16 in linkage group 3, complete sequence Length = 85980 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 cagcaaaaccctaattttcac 36 ||||||||||||||||||||| Sbjct: 7605 cagcaaaaccctaattttcac 7585
>emb|AL596203.6| Zebrafish DNA sequence from clone BUSM1-94E17 in linkage group 3, complete sequence Length = 104106 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 cagcaaaaccctaattttcac 36 ||||||||||||||||||||| Sbjct: 31190 cagcaaaaccctaattttcac 31210
>gb|AE003424.2| Drosophila melanogaster chromosome X, section 8 of 74 of the complete sequence Length = 274777 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 gctccgccgccgtcgcgcaca 193 ||||||||||||||||||||| Sbjct: 229573 gctccgccgccgtcgcgcaca 229593
>emb|CR376732.12| Zebrafish DNA sequence from clone DKEY-146H23 in linkage group 3, complete sequence Length = 171210 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 cagcaaaaccctaattttcac 36 ||||||||||||||||||||| Sbjct: 35141 cagcaaaaccctaattttcac 35161
>gb|U15602.1|DMU15602 Drosophila melanogaster (zeste-white 4) mRNA, complete cds Length = 3500 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 gctccgccgccgtcgcgcaca 193 ||||||||||||||||||||| Sbjct: 127 gctccgccgccgtcgcgcaca 147
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 cgcacagccggccggccgtcgggc 211 ||||| |||||||||||||||||| Sbjct: 3245459 cgcaccgccggccggccgtcgggc 3245436
>gb|AC102931.10| Mus musculus chromosome 7, clone RP24-221B5, complete sequence Length = 164298 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 gcaaaaccctaattttcacc 37 |||||||||||||||||||| Sbjct: 74529 gcaaaaccctaattttcacc 74510
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cgccctggagcggcacctcc 335 |||||||||||||||||||| Sbjct: 1568778 cgccctggagcggcacctcc 1568759
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 cgcacagccggccggccgtcgggc 211 ||||| |||||||||||||||||| Sbjct: 703795 cgcaccgccggccggccgtcgggc 703772
>ref|XM_801656.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507583.40) partial mRNA Length = 1374 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 124 gcgacgggacgagggccagcagggaggg 151 ||||||||| |||||| ||||||||||| Sbjct: 1137 gcgacgggaggagggcgagcagggaggg 1164
>ref|XM_843438.1| PREDICTED: Canis familiaris similar to Protein C18orf8 (Colon cancer-associated protein Mic1) (Mic-1) (LOC606951), mRNA Length = 2394 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 agcgacgggacgagggccagcagg 146 |||||||||| ||||||||||||| Sbjct: 101 agcgacgggaggagggccagcagg 124
>gb|AC158575.3| Mus musculus chromosome 7, clone RP23-275H16, complete sequence Length = 221489 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 gcaaaaccctaattttcacc 37 |||||||||||||||||||| Sbjct: 189163 gcaaaaccctaattttcacc 189182
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 cgcacagccggccggccgtcgggc 211 ||||| |||||||||||||||||| Sbjct: 512422 cgcaccgccggccggccgtcgggc 512399
>gb|AC005700.3| Arabidopsis thaliana chromosome 2 clone T32F6 map TEn5, complete sequence Length = 100424 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 aaaaccctaattttcacccaattc 43 |||||||||||||||| ||||||| Sbjct: 76877 aaaaccctaattttcagccaattc 76854
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 174 ctccgccgccgtcgcgcacagccggccggccgtcgg 209 ||||||||||||||||| || | || |||||||||| Sbjct: 404899 ctccgccgccgtcgcgcccaccagggcggccgtcgg 404864
>gb|AY466441.1| Saccharopolyspora spinosa NRLL 18395 obscurin polyketide synthase gene locus, complete sequence Length = 108584 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 cgccctggagcggcacctcc 335 |||||||||||||||||||| Sbjct: 104261 cgccctggagcggcacctcc 104280
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 cgcacagccggccggccgtcgggc 211 |||||| ||||||||||||||||| Sbjct: 5218552 cgcacacccggccggccgtcgggc 5218575
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 cgggacgagggccagcaggg 147 |||||||||||||||||||| Sbjct: 3053910 cgggacgagggccagcaggg 3053929
>emb|BX855590.3| Zebrafish DNA sequence from clone CH211-245N8, complete sequence Length = 179373 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 gagggccagcagggagggat 153 |||||||||||||||||||| Sbjct: 137962 gagggccagcagggagggat 137943
>dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1359_D06 Length = 146805 Score = 40.1 bits (20), Expect = 4.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 174 ctccgccgccgtcgcgcacagccggccggccgtcgg 209 ||||||||||||||||| || | || |||||||||| Sbjct: 133683 ctccgccgccgtcgcgcccaccagggcggccgtcgg 133648
>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017C12 Length = 135356 Score = 40.1 bits (20), Expect = 4.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 174 ctccgccgccgtcgcgcacagccggccggccgtcgg 209 ||||||||||||||||| || | || |||||||||| Sbjct: 1140 ctccgccgccgtcgcgcccaccagggcggccgtcgg 1105
>dbj|AK099892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113C03, full insert sequence Length = 1492 Score = 40.1 bits (20), Expect = 4.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 174 ctccgccgccgtcgcgcacagccggccggccgtcgg 209 ||||||||||||||||| || | || |||||||||| Sbjct: 842 ctccgccgccgtcgcgcccaccagggcggccgtcgg 877
>emb|BX901948.4| Zebrafish DNA sequence from clone DKEY-187E3 in linkage group 9, complete sequence Length = 65953 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 agcaaaaccctaattttcac 36 |||||||||||||||||||| Sbjct: 15737 agcaaaaccctaattttcac 15756
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 cgcacagccggccggccgtcgggc 211 ||||| |||||||||||||||||| Sbjct: 491610 cgcaccgccggccggccgtcgggc 491587 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,006,289 Number of Sequences: 3902068 Number of extensions: 2006289 Number of successful extensions: 42908 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41999 Number of HSP's gapped (non-prelim): 909 length of query: 364 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 342 effective length of database: 17,147,199,772 effective search space: 5864342322024 effective search space used: 5864342322024 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
