ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast05a06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF104108.1| Triticum aestivum small heat shock protein Hsp23.6 mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 988 Score = 107 bits (54), Expect = 2e-20 Identities = 99/114 (86%) Strand = Plus / Plus Query: 106 cgccggccagcttcctcaagtccggcgctcccgtggccttctgccccctcaacaccaccg 165 ||||||||||| ||||||||||||| ||||||||||||||| || | || || || ||| Sbjct: 105 cgccggccagcctcctcaagtccggtgctcccgtggccttccgctcggtccactcccccg 164 Query: 166 ccgtcaccgccgaccaccgcccgtacaacaccctggtcaaggaggccatccgct 219 |||||||||||| || ||||||||||||||||| || |||||||| || ||||| Sbjct: 165 ccgtcaccgccgcccgccgcccgtacaacacccaggccaaggaggtcagccgct 218 Score = 93.7 bits (47), Expect = 3e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 237 tacagcggccgccacctcgtcctccctagcttcttctcgcaggacgtcctcgacccgctc 296 |||||||||||| |||||||| |||| |||||||||||||||||||| ||||||||||| Sbjct: 239 tacagcggccgcgacctcgtcatccccagcttcttctcgcaggacgtgatcgacccgctc 298 Query: 297 ggcgcgc 303 ||||||| Sbjct: 299 ggcgcgc 305 Score = 48.1 bits (24), Expect = 0.017 Identities = 27/28 (96%) Strand = Plus / Plus Query: 73 ccatggcttccgccgtcgcttgcaaggg 100 |||||||||||||||||| ||||||||| Sbjct: 66 ccatggcttccgccgtcgattgcaaggg 93
>ref|XM_473452.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1548 Score = 44.1 bits (22), Expect = 0.26 Identities = 28/30 (93%) Strand = Plus / Plus Query: 151 ccctcaacaccaccgccgtcaccgccgacc 180 |||||| ||||||||||||| ||||||||| Sbjct: 1235 ccctcatcaccaccgccgtctccgccgacc 1264
>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence Length = 127506 Score = 44.1 bits (22), Expect = 0.26 Identities = 28/30 (93%) Strand = Plus / Minus Query: 151 ccctcaacaccaccgccgtcaccgccgacc 180 |||||| ||||||||||||| ||||||||| Sbjct: 26243 ccctcatcaccaccgccgtctccgccgacc 26214
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.26 Identities = 28/30 (93%) Strand = Plus / Minus Query: 151 ccctcaacaccaccgccgtcaccgccgacc 180 |||||| ||||||||||||| ||||||||| Sbjct: 27757575 ccctcatcaccaccgccgtctccgccgacc 27757546 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 acaccaccgccgtcaccgcc 176 |||||||||||||||||||| Sbjct: 25393890 acaccaccgccgtcaccgcc 25393871 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 14013955 caccgccgtcaccgccgacc 14013974
>dbj|AK105088.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-B04, full insert sequence Length = 1228 Score = 44.1 bits (22), Expect = 0.26 Identities = 28/30 (93%) Strand = Plus / Plus Query: 151 ccctcaacaccaccgccgtcaccgccgacc 180 |||||| ||||||||||||| ||||||||| Sbjct: 668 ccctcatcaccaccgccgtctccgccgacc 697
>dbj|AK103226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123B14, full insert sequence Length = 2158 Score = 44.1 bits (22), Expect = 0.26 Identities = 28/30 (93%) Strand = Plus / Plus Query: 151 ccctcaacaccaccgccgtcaccgccgacc 180 |||||| ||||||||||||| ||||||||| Sbjct: 1441 ccctcatcaccaccgccgtctccgccgacc 1470
>gb|AC097176.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1576_F01, complete sequence Length = 119525 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 6086 caccgccgtcaccgccgacc 6105
>ref|XM_514921.1| PREDICTED: Pan troglodytes similar to solute carrier family 37 member 1; glycerol-3-phosphate permease (LOC458580), mRNA Length = 720 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 153 ctcaacaccaccgccgtcaccgccgacc 180 |||| ||||||||||||| ||||||||| Sbjct: 445 ctcatcaccaccgccgtctccgccgacc 472
>ref|XM_531475.1| PREDICTED: Pan troglodytes LOC474017 (LOC474017), mRNA Length = 1942 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 153 ctcaacaccaccgccgtcaccgccgacc 180 |||| ||||||||||||| ||||||||| Sbjct: 1555 ctcatcaccaccgccgtctccgccgacc 1582
>ref|XM_465192.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1608 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 1390 caccgccgtcaccgccgacc 1409
>ref|XM_473122.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 615 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 acaccaccgccgtcaccgcc 176 |||||||||||||||||||| Sbjct: 158 acaccaccgccgtcaccgcc 139
>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01, complete sequence Length = 126532 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 76814 caccgccgtcaccgccgacc 76833
>gb|AC116601.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0079B05, complete sequence Length = 159382 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 63806 caccgccgtcaccgccgacc 63825
>ref|NM_018964.3| Homo sapiens solute carrier family 37 (glycerol-3-phosphate transporter), member 1 (SLC37A1), mRNA Length = 3098 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 153 ctcaacaccaccgccgtcaccgccgacc 180 |||| ||||||||||||| ||||||||| Sbjct: 1727 ctcatcaccaccgccgtctccgccgacc 1754
>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12, complete sequence Length = 139627 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 79796 caccgccgtcaccgccgacc 79815
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 13395678 caccgccgtcaccgccgacc 13395659
>gb|AC146542.2| Gasterosteus aculeatus clone CH213-58L3, complete sequence Length = 231097 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tggatccaaaacaatcacag 20 |||||||||||||||||||| Sbjct: 17768 tggatccaaaacaatcacag 17787
>ref|XM_745941.1| Aspergillus fumigatus Af293 hypothetical protein (Afu6g11510) partial mRNA Length = 2307 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 cgtggccttctgccccctca 156 |||||||||||||||||||| Sbjct: 484 cgtggccttctgccccctca 503
>gb|AC126224.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0078O24, complete sequence Length = 135980 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 92549 caccgccgtcaccgccgacc 92530
>gb|AC155341.1| Brassica rapa subsp. pekinensis chromosome 6 clone KBrH004D11, complete sequence Length = 106476 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 cgtcctcgacccgctcggcg 300 |||||||||||||||||||| Sbjct: 49497 cgtcctcgacccgctcggcg 49516
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 1265094 caccgccgtcaccgccgacc 1265113
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 tcctcgacccgctcggcgcg 302 |||||||||||||||||||| Sbjct: 130611 tcctcgacccgctcggcgcg 130630
>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22, complete sequence Length = 174430 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 127835 caccgccgtcaccgccgacc 127854
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence Length = 164577 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 acaccaccgccgtcaccgcc 176 |||||||||||||||||||| Sbjct: 120448 acaccaccgccgtcaccgcc 120429
>dbj|AP001625.1| Homo sapiens genomic DNA, chromosome 21, clone:KB907F12, MX1-D21S171 region, complete sequence Length = 130626 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 153 ctcaacaccaccgccgtcaccgccgacc 180 |||| ||||||||||||| ||||||||| Sbjct: 85734 ctcatcaccaccgccgtctccgccgacc 85761
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 cgtcctcgacccgctcggcg 300 |||||||||||||||||||| Sbjct: 2631125 cgtcctcgacccgctcggcg 2631144
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 ccaccgccgtcaccgccgac 179 |||||||||||||||||||| Sbjct: 13625947 ccaccgccgtcaccgccgac 13625928
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 1265094 caccgccgtcaccgccgacc 1265113
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 9942179 caccgccgtcaccgccgacc 9942160
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 21957600 caccgccgtcaccgccgacc 21957619 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 11635361 caccgccgtcaccgccgacc 11635380
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 13392453 caccgccgtcaccgccgacc 13392434
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 31354037 caccgccgtcaccgccgacc 31354056 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 cggccgccacctcgtcctcc 261 |||||||||||||||||||| Sbjct: 21667132 cggccgccacctcgtcctcc 21667113 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 12201349 caccgccgtcaccgccgacc 12201330
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 13385196 caccgccgtcaccgccgacc 13385215
>gb|AF311320.1|AF311320 Homo sapiens glycerol 3-phosphate permease (SLC37A1) mRNA, complete cds Length = 3644 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 153 ctcaacaccaccgccgtcaccgccgacc 180 |||| ||||||||||||| ||||||||| Sbjct: 2297 ctcatcaccaccgccgtctccgccgacc 2324
>dbj|AP003337.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1111_G12 Length = 112664 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 29749 caccgccgtcaccgccgacc 29768
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 tcctcaagtccggcgctcccgtgg 141 |||||||||| ||||||||||||| Sbjct: 624843 tcctcaagtcaggcgctcccgtgg 624820
>dbj|AP006068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020D05 Length = 158760 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 cggccgccacctcgtcctcc 261 |||||||||||||||||||| Sbjct: 156082 cggccgccacctcgtcctcc 156063
>dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03 Length = 119796 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 36611 caccgccgtcaccgccgacc 36630
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1118_G04 Length = 134464 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 123905 caccgccgtcaccgccgacc 123924
>dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088D01 Length = 146144 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 125554 caccgccgtcaccgccgacc 125573
>dbj|BS000135.1| Pan troglodytes chromosome 22 clone:RP43-114M01, map 22, complete sequences Length = 73133 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 153 ctcaacaccaccgccgtcaccgccgacc 180 |||| ||||||||||||| ||||||||| Sbjct: 15868 ctcatcaccaccgccgtctccgccgacc 15895
>dbj|AP006069.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0025F02 Length = 156545 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 cggccgccacctcgtcctcc 261 |||||||||||||||||||| Sbjct: 48529 cggccgccacctcgtcctcc 48510
>dbj|AP005607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ9003_D08 Length = 88854 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 24810 caccgccgtcaccgccgacc 24791
>dbj|AP005697.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0005C03 Length = 166423 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 89426 caccgccgtcaccgccgacc 89407
>dbj|AK025993.1| Homo sapiens cDNA: FLJ22340 fis, clone HRC06030, highly similar to HSA269529 Homo sapiens mRNA for glycerol 3-phosphate permease (SLC37A1 gene) Length = 1470 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 153 ctcaacaccaccgccgtcaccgccgacc 180 |||| ||||||||||||| ||||||||| Sbjct: 190 ctcatcaccaccgccgtctccgccgacc 217
>emb|AJ269529.2|HSA269529 Homo sapiens mRNA for glycerol 3-phosphate permease (SLC37A1 gene) Length = 3068 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 153 ctcaacaccaccgccgtcaccgccgacc 180 |||| ||||||||||||| ||||||||| Sbjct: 1727 ctcatcaccaccgccgtctccgccgacc 1754
>emb|AL772186.11| Mouse DNA sequence from clone RP23-281K3 on chromosome 4, complete sequence Length = 205714 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 cctcgtcctccctagcttcttctc 274 |||| ||||||||||||||||||| Sbjct: 140460 cctcttcctccctagcttcttctc 140437
>dbj|AP001747.1| Homo sapiens genomic DNA, chromosome 21q, section 91/105 Length = 340000 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 153 ctcaacaccaccgccgtcaccgccgacc 180 |||| ||||||||||||| ||||||||| Sbjct: 61887 ctcatcaccaccgccgtctccgccgacc 61914
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 caccgccgtcaccgccgacc 180 |||||||||||||||||||| Sbjct: 1265091 caccgccgtcaccgccgacc 1265110
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 ccaccgccgtcaccgccgac 179 |||||||||||||||||||| Sbjct: 13580221 ccaccgccgtcaccgccgac 13580202
>emb|AL713929.5|CNS07YP6 Oryza sativa chromosome 12, . BAC OSJNBb0029H23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 119798 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ccaccgccgtcaccgccgac 179 |||||||||||||||||||| Sbjct: 71277 ccaccgccgtcaccgccgac 71296 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,499,608 Number of Sequences: 3902068 Number of extensions: 1499608 Number of successful extensions: 35429 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34634 Number of HSP's gapped (non-prelim): 794 length of query: 313 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 291 effective length of database: 17,147,199,772 effective search space: 4989835133652 effective search space used: 4989835133652 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
