ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast04g05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_481582.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1684 Score = 139 bits (70), Expect = 8e-30 Identities = 184/222 (82%) Strand = Plus / Plus Query: 190 aggggtacaacatcaccaagatcctgggcgagtacccggagtactcgcagttcaacaagc 249 ||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 229 aggggtacaacatcaccaagatcctcggggaccacccggagtactcgcagttcaacaagc 288 Query: 250 tgctcacgcagacgcggctggcgcaggacatcaacaagcgccgcaccatcaccgtcctcg 309 |||| || ||||||||||||| ||||||||| |||||||||||||| || || | Sbjct: 289 tgctgacagagacgcggctggccggcgacatcaaccgccgccgcaccatcacggtgctgg 348 Query: 310 tcgtcgccaacagcgacatgggcagtctcgccggcggcggccgcacgctgcagaccatcc 369 | || |||||| ||||||||||| ||| |||||||| | ||| || | || ||| Sbjct: 349 tggtggccaacggcgacatgggcgcgctctccggcggccactacaccctccccacgctcc 408 Query: 370 gccacatgctccagattcacgtcctcgtcgactactacggcg 411 ||||||| ||| |||| ||| ||||||||||||||||||||| Sbjct: 409 gccacatcctcgagatgcacatcctcgtcgactactacggcg 450
>ref|XM_507190.1| PREDICTED Oryza sativa (japonica cultivar-group), P0005C02.108 mRNA Length = 1759 Score = 139 bits (70), Expect = 8e-30 Identities = 184/222 (82%) Strand = Plus / Plus Query: 190 aggggtacaacatcaccaagatcctgggcgagtacccggagtactcgcagttcaacaagc 249 ||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 272 aggggtacaacatcaccaagatcctcggggaccacccggagtactcgcagttcaacaagc 331 Query: 250 tgctcacgcagacgcggctggcgcaggacatcaacaagcgccgcaccatcaccgtcctcg 309 |||| || ||||||||||||| ||||||||| |||||||||||||| || || | Sbjct: 332 tgctgacagagacgcggctggccggcgacatcaaccgccgccgcaccatcacggtgctgg 391 Query: 310 tcgtcgccaacagcgacatgggcagtctcgccggcggcggccgcacgctgcagaccatcc 369 | || |||||| ||||||||||| ||| |||||||| | ||| || | || ||| Sbjct: 392 tggtggccaacggcgacatgggcgcgctctccggcggccactacaccctccccacgctcc 451 Query: 370 gccacatgctccagattcacgtcctcgtcgactactacggcg 411 ||||||| ||| |||| ||| ||||||||||||||||||||| Sbjct: 452 gccacatcctcgagatgcacatcctcgtcgactactacggcg 493
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 139 bits (70), Expect = 8e-30 Identities = 184/222 (82%) Strand = Plus / Minus Query: 190 aggggtacaacatcaccaagatcctgggcgagtacccggagtactcgcagttcaacaagc 249 ||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 13980609 aggggtacaacatcaccaagatcctcggggaccacccggagtactcgcagttcaacaagc 13980550 Query: 250 tgctcacgcagacgcggctggcgcaggacatcaacaagcgccgcaccatcaccgtcctcg 309 |||| || ||||||||||||| ||||||||| |||||||||||||| || || | Sbjct: 13980549 tgctgacagagacgcggctggccggcgacatcaaccgccgccgcaccatcacggtgctgg 13980490 Query: 310 tcgtcgccaacagcgacatgggcagtctcgccggcggcggccgcacgctgcagaccatcc 369 | || |||||| ||||||||||| ||| |||||||| | ||| || | || ||| Sbjct: 13980489 tggtggccaacggcgacatgggcgcgctctccggcggccactacaccctccccacgctcc 13980430 Query: 370 gccacatgctccagattcacgtcctcgtcgactactacggcg 411 ||||||| ||| |||| ||| ||||||||||||||||||||| Sbjct: 13980429 gccacatcctcgagatgcacatcctcgtcgactactacggcg 13980388
>dbj|AP004554.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0005C02 Length = 62423 Score = 139 bits (70), Expect = 8e-30 Identities = 184/222 (82%) Strand = Plus / Minus Query: 190 aggggtacaacatcaccaagatcctgggcgagtacccggagtactcgcagttcaacaagc 249 ||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 34932 aggggtacaacatcaccaagatcctcggggaccacccggagtactcgcagttcaacaagc 34873 Query: 250 tgctcacgcagacgcggctggcgcaggacatcaacaagcgccgcaccatcaccgtcctcg 309 |||| || ||||||||||||| ||||||||| |||||||||||||| || || | Sbjct: 34872 tgctgacagagacgcggctggccggcgacatcaaccgccgccgcaccatcacggtgctgg 34813 Query: 310 tcgtcgccaacagcgacatgggcagtctcgccggcggcggccgcacgctgcagaccatcc 369 | || |||||| ||||||||||| ||| |||||||| | ||| || | || ||| Sbjct: 34812 tggtggccaacggcgacatgggcgcgctctccggcggccactacaccctccccacgctcc 34753 Query: 370 gccacatgctccagattcacgtcctcgtcgactactacggcg 411 ||||||| ||| |||| ||| ||||||||||||||||||||| Sbjct: 34752 gccacatcctcgagatgcacatcctcgtcgactactacggcg 34711
>dbj|AP004661.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0048E12 Length = 152543 Score = 139 bits (70), Expect = 8e-30 Identities = 184/222 (82%) Strand = Plus / Minus Query: 190 aggggtacaacatcaccaagatcctgggcgagtacccggagtactcgcagttcaacaagc 249 ||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 12500 aggggtacaacatcaccaagatcctcggggaccacccggagtactcgcagttcaacaagc 12441 Query: 250 tgctcacgcagacgcggctggcgcaggacatcaacaagcgccgcaccatcaccgtcctcg 309 |||| || ||||||||||||| ||||||||| |||||||||||||| || || | Sbjct: 12440 tgctgacagagacgcggctggccggcgacatcaaccgccgccgcaccatcacggtgctgg 12381 Query: 310 tcgtcgccaacagcgacatgggcagtctcgccggcggcggccgcacgctgcagaccatcc 369 | || |||||| ||||||||||| ||| |||||||| | ||| || | || ||| Sbjct: 12380 tggtggccaacggcgacatgggcgcgctctccggcggccactacaccctccccacgctcc 12321 Query: 370 gccacatgctccagattcacgtcctcgtcgactactacggcg 411 ||||||| ||| |||| ||| ||||||||||||||||||||| Sbjct: 12320 gccacatcctcgagatgcacatcctcgtcgactactacggcg 12279
>dbj|AK119591.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D04, full insert sequence Length = 1666 Score = 139 bits (70), Expect = 8e-30 Identities = 184/222 (82%) Strand = Plus / Plus Query: 190 aggggtacaacatcaccaagatcctgggcgagtacccggagtactcgcagttcaacaagc 249 ||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 211 aggggtacaacatcaccaagatcctcggggaccacccggagtactcgcagttcaacaagc 270 Query: 250 tgctcacgcagacgcggctggcgcaggacatcaacaagcgccgcaccatcaccgtcctcg 309 |||| || ||||||||||||| ||||||||| |||||||||||||| || || | Sbjct: 271 tgctgacagagacgcggctggccggcgacatcaaccgccgccgcaccatcacggtgctgg 330 Query: 310 tcgtcgccaacagcgacatgggcagtctcgccggcggcggccgcacgctgcagaccatcc 369 | || |||||| ||||||||||| ||| |||||||| | ||| || | || ||| Sbjct: 331 tggtggccaacggcgacatgggcgcgctctccggcggccactacaccctccccacgctcc 390 Query: 370 gccacatgctccagattcacgtcctcgtcgactactacggcg 411 ||||||| ||| |||| ||| ||||||||||||||||||||| Sbjct: 391 gccacatcctcgagatgcacatcctcgtcgactactacggcg 432
>dbj|AK119590.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-D03, full insert sequence Length = 1725 Score = 139 bits (70), Expect = 8e-30 Identities = 184/222 (82%) Strand = Plus / Plus Query: 190 aggggtacaacatcaccaagatcctgggcgagtacccggagtactcgcagttcaacaagc 249 ||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 234 aggggtacaacatcaccaagatcctcggggaccacccggagtactcgcagttcaacaagc 293 Query: 250 tgctcacgcagacgcggctggcgcaggacatcaacaagcgccgcaccatcaccgtcctcg 309 |||| || ||||||||||||| ||||||||| |||||||||||||| || || | Sbjct: 294 tgctgacagagacgcggctggccggcgacatcaaccgccgccgcaccatcacggtgctgg 353 Query: 310 tcgtcgccaacagcgacatgggcagtctcgccggcggcggccgcacgctgcagaccatcc 369 | || |||||| ||||||||||| ||| |||||||| | ||| || | || ||| Sbjct: 354 tggtggccaacggcgacatgggcgcgctctccggcggccactacaccctccccacgctcc 413 Query: 370 gccacatgctccagattcacgtcctcgtcgactactacggcg 411 ||||||| ||| |||| ||| ||||||||||||||||||||| Sbjct: 414 gccacatcctcgagatgcacatcctcgtcgactactacggcg 455
>dbj|AK104404.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C07, full insert sequence Length = 1682 Score = 139 bits (70), Expect = 8e-30 Identities = 184/222 (82%) Strand = Plus / Plus Query: 190 aggggtacaacatcaccaagatcctgggcgagtacccggagtactcgcagttcaacaagc 249 ||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 227 aggggtacaacatcaccaagatcctcggggaccacccggagtactcgcagttcaacaagc 286 Query: 250 tgctcacgcagacgcggctggcgcaggacatcaacaagcgccgcaccatcaccgtcctcg 309 |||| || ||||||||||||| ||||||||| |||||||||||||| || || | Sbjct: 287 tgctgacagagacgcggctggccggcgacatcaaccgccgccgcaccatcacggtgctgg 346 Query: 310 tcgtcgccaacagcgacatgggcagtctcgccggcggcggccgcacgctgcagaccatcc 369 | || |||||| ||||||||||| ||| |||||||| | ||| || | || ||| Sbjct: 347 tggtggccaacggcgacatgggcgcgctctccggcggccactacaccctccccacgctcc 406 Query: 370 gccacatgctccagattcacgtcctcgtcgactactacggcg 411 ||||||| ||| |||| ||| ||||||||||||||||||||| Sbjct: 407 gccacatcctcgagatgcacatcctcgtcgactactacggcg 448
>dbj|AK068096.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134F13, full insert sequence Length = 1759 Score = 139 bits (70), Expect = 8e-30 Identities = 184/222 (82%) Strand = Plus / Plus Query: 190 aggggtacaacatcaccaagatcctgggcgagtacccggagtactcgcagttcaacaagc 249 ||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 272 aggggtacaacatcaccaagatcctcggggaccacccggagtactcgcagttcaacaagc 331 Query: 250 tgctcacgcagacgcggctggcgcaggacatcaacaagcgccgcaccatcaccgtcctcg 309 |||| || ||||||||||||| ||||||||| |||||||||||||| || || | Sbjct: 332 tgctgacagagacgcggctggccggcgacatcaaccgccgccgcaccatcacggtgctgg 391 Query: 310 tcgtcgccaacagcgacatgggcagtctcgccggcggcggccgcacgctgcagaccatcc 369 | || |||||| ||||||||||| ||| |||||||| | ||| || | || ||| Sbjct: 392 tggtggccaacggcgacatgggcgcgctctccggcggccactacaccctccccacgctcc 451 Query: 370 gccacatgctccagattcacgtcctcgtcgactactacggcg 411 ||||||| ||| |||| ||| ||||||||||||||||||||| Sbjct: 452 gccacatcctcgagatgcacatcctcgtcgactactacggcg 493
>gb|AY105514.1| Zea mays PCO139734 mRNA sequence Length = 815 Score = 73.8 bits (37), Expect = 4e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 355 cgctgcagaccatccgccacatgctccagattcacgtcctcgtcgactactacggcg 411 |||||||||||||||||||||| ||| || | ||||| ||||||||||||||||||| Sbjct: 348 cgctgcagaccatccgccacatcctcgagctgcacgttctcgtcgactactacggcg 404
>gb|AC169371.2| Sorghum bicolor clone SB_BBc0127F08, complete sequence Length = 70712 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 294 accatcaccgtcctcgtcgtcgccaacagcgacatgggc 332 ||||||||||| |||| |||||||||| ||||||||||| Sbjct: 26244 accatcaccgtgctcgccgtcgccaacggcgacatgggc 26282
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 330 ggcagtctcgccggcggcggccgc 353 |||||||||||||||||||||||| Sbjct: 1243140 ggcagtctcgccggcggcggccgc 1243117
>emb|AJ628018.2| Streptomyces sp. SCC 2136 deoxysugar biosynthetic gene cluster Length = 77550 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 198 aacatcaccaagatcctgggcgag 221 |||||||||||||||||||||||| Sbjct: 48098 aacatcaccaagatcctgggcgag 48075
>ref|XM_467569.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1160 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 387 cacgtcctcgtcgactactacg 408 |||||||||||||||||||||| Sbjct: 372 cacgtcctcgtcgactactacg 393
>ref|XM_506949.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1124_G07.29 mRNA Length = 1257 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 387 cacgtcctcgtcgactactacg 408 |||||||||||||||||||||| Sbjct: 372 cacgtcctcgtcgactactacg 393
>ref|XM_470549.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4449 Score = 44.1 bits (22), Expect = 0.35 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 93 ggcgccgacgcacc-gaggacgaggaggacgatg 125 |||||||||||||| ||| ||||||||||||||| Sbjct: 702 ggcgccgacgcacccgagcacgaggaggacgatg 669
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.35 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 93 ggcgccgacgcacc-gaggacgaggaggacgatg 125 |||||||||||||| ||| ||||||||||||||| Sbjct: 4261835 ggcgccgacgcacccgagcacgaggaggacgatg 4261802
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 104 accgaggacgaggaggacgatg 125 |||||||||||||||||||||| Sbjct: 1268280 accgaggacgaggaggacgatg 1268259
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.35 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 93 ggcgccgacgcacc-gaggacgaggaggacgatg 125 |||||||||||||| ||| ||||||||||||||| Sbjct: 4261950 ggcgccgacgcacccgagcacgaggaggacgatg 4261917
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 387 cacgtcctcgtcgactactacg 408 |||||||||||||||||||||| Sbjct: 30217971 cacgtcctcgtcgactactacg 30217950 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 tttcagtggtgctgcccagct 50 ||||||||||||||||||||| Sbjct: 35240001 tttcagtggtgctgcccagct 35239981 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 tcaccgtcctcgtcgtcgcca 318 ||||||||||||||||||||| Sbjct: 18281810 tcaccgtcctcgtcgtcgcca 18281830
>dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_G07 Length = 93240 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 387 cacgtcctcgtcgactactacg 408 |||||||||||||||||||||| Sbjct: 90675 cacgtcctcgtcgactactacg 90654
>dbj|AP005284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1121A12 Length = 138796 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 387 cacgtcctcgtcgactactacg 408 |||||||||||||||||||||| Sbjct: 18888 cacgtcctcgtcgactactacg 18867
>ref|XM_321674.2| Anopheles gambiae str. PEST ENSANGP00000009670 (ENSANGG00000007238), partial mRNA Length = 717 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 102 gcaccgaggacgaggaggacga 123 |||||||||||||||||||||| Sbjct: 193 gcaccgaggacgaggaggacga 172
>dbj|AK099178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023096L20, full insert sequence Length = 1257 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 387 cacgtcctcgtcgactactacg 408 |||||||||||||||||||||| Sbjct: 372 cacgtcctcgtcgactactacg 393
>dbj|AK072936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150F23, full insert sequence Length = 1160 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 387 cacgtcctcgtcgactactacg 408 |||||||||||||||||||||| Sbjct: 372 cacgtcctcgtcgactactacg 393
>ref|NM_209769.1| Eremothecium gossypii ADR320Cp (ADR320C), mRNA Length = 831 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 104 accgaggacgaggaggacgatg 125 |||||||||||||||||||||| Sbjct: 628 accgaggacgaggaggacgatg 649
>gb|AY105746.1| Zea mays PCO099975 mRNA sequence Length = 1421 Score = 44.1 bits (22), Expect = 0.35 Identities = 40/46 (86%) Strand = Plus / Plus Query: 363 accatccgccacatgctccagattcacgtcctcgtcgactactacg 408 |||||||||||||| ||| || | |||||| ||| ||||||||||| Sbjct: 57 accatccgccacatcctcgagctgcacgtcgtcgccgactactacg 102
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 44.1 bits (22), Expect = 0.35 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 93 ggcgccgacgcacc-gaggacgaggaggacgatg 125 |||||||||||||| ||| ||||||||||||||| Sbjct: 90450 ggcgccgacgcacccgagcacgaggaggacgatg 90417
>ref|XM_465910.1| Oryza sativa (japonica cultivar-group), mRNA Length = 213 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 tcaccgtcctcgtcgtcgcca 318 ||||||||||||||||||||| Sbjct: 167 tcaccgtcctcgtcgtcgcca 187
>ref|XM_868453.1| PREDICTED: Bos taurus similar to H2B histone family, member W, testis-specific (LOC616431), mRNA Length = 653 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 caacaagcgccgcaccatcac 301 ||||||||||||||||||||| Sbjct: 404 caacaagcgccgcaccatcac 424
>ref|XM_610149.1| PREDICTED: Bos taurus similar to H2B histone family, member W, testis-specific (LOC531650), mRNA Length = 588 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 caacaagcgccgcaccatcac 301 ||||||||||||||||||||| Sbjct: 459 caacaagcgccgcaccatcac 479
>emb|AL136375.6| Human DNA sequence from clone RP11-95B22 on chromosome 1q31.1-31.3 Contains STSs and GSSs, complete sequence Length = 57629 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 cagtgatttttcagtggtgct 42 ||||||||||||||||||||| Sbjct: 55056 cagtgatttttcagtggtgct 55076
>gb|AC079111.7| Homo sapiens chromosome 17, clone RP11-367G9, complete sequence Length = 163410 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 43 gcccagctcagtgctctccaccagt 67 |||||||||||||||||||| |||| Sbjct: 116104 gcccagctcagtgctctccatcagt 116080
>gb|BC112595.1| Bos taurus cDNA clone IMAGE:8018439 Length = 827 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 caacaagcgccgcaccatcac 301 ||||||||||||||||||||| Sbjct: 481 caacaagcgccgcaccatcac 501
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 103 caccgaggacgaggaggacga 123 ||||||||||||||||||||| Sbjct: 634039 caccgaggacgaggaggacga 634059
>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052M16 Length = 145423 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 tcaccgtcctcgtcgtcgcca 318 ||||||||||||||||||||| Sbjct: 83023 tcaccgtcctcgtcgtcgcca 83043
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 tttcagtggtgctgcccagct 50 ||||||||||||||||||||| Sbjct: 52051 tttcagtggtgctgcccagct 52031
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 tttcagtggtgctgcccagct 50 ||||||||||||||||||||| Sbjct: 135357 tttcagtggtgctgcccagct 135337
>gb|BC111631.1| Bos taurus cDNA clone IMAGE:8022213 Length = 692 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 caacaagcgccgcaccatcac 301 ||||||||||||||||||||| Sbjct: 423 caacaagcgccgcaccatcac 443
>gb|AC102766.5| Mus musculus chromosome 5, clone RP23-20L22, complete sequence Length = 203741 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tacaacatcaccaagatcct 214 |||||||||||||||||||| Sbjct: 132363 tacaacatcaccaagatcct 132382
>ref|XM_450262.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1467 Score = 40.1 bits (20), Expect = 5.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 363 accatccgccacatgctccagattcacgtcctcgtcgactactacggc 410 |||||||||||||| ||| | ||| |||||||||||||||||||| Sbjct: 282 accatccgccacatcctctccctccacatcctcgtcgactactacggc 329
>ref|XM_507426.1| PREDICTED Oryza sativa (japonica cultivar-group), P0499G10.19 mRNA Length = 1490 Score = 40.1 bits (20), Expect = 5.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 363 accatccgccacatgctccagattcacgtcctcgtcgactactacggc 410 |||||||||||||| ||| | ||| |||||||||||||||||||| Sbjct: 330 accatccgccacatcctctccctccacatcctcgtcgactactacggc 377
>ref|XM_506639.2| PREDICTED Oryza sativa (japonica cultivar-group), P0499G10.19 mRNA Length = 1539 Score = 40.1 bits (20), Expect = 5.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 363 accatccgccacatgctccagattcacgtcctcgtcgactactacggc 410 |||||||||||||| ||| | ||| |||||||||||||||||||| Sbjct: 354 accatccgccacatcctctccctccacatcctcgtcgactactacggc 401
>gb|AY390526.1| Cricetulus griseus external transcribed spacer, 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 8240 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 64 cagtccgccccgccccatcccgagctcc 91 ||||||||||||||||| |||| ||||| Sbjct: 7306 cagtccgccccgccccaacccgggctcc 7279
>gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete sequence Length = 906719 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 cgaggacgaggaggacgatg 125 |||||||||||||||||||| Sbjct: 209588 cgaggacgaggaggacgatg 209607
>gb|CP000078.1| Leishmania major strain Friedlin chromosome 2, complete sequence Length = 355714 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 gcaccgaggacgaggaggac 121 |||||||||||||||||||| Sbjct: 216649 gcaccgaggacgaggaggac 216668
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 ttttcagtggtgctgcccag 48 |||||||||||||||||||| Sbjct: 2960631 ttttcagtggtgctgcccag 2960650
>gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone BAC nbxb0045B21, complete sequence Length = 152397 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 caccgaggacgaggaggacgatgg 126 |||||| ||||||||||||||||| Sbjct: 121667 caccgacgacgaggaggacgatgg 121690
>gb|AE009429.1| Agrobacterium tumefaciens str. C58 Ti plasmid, section 12 of 21 of the complete sequence Length = 11127 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atcaccgtcctcgtcgtcgc 316 |||||||||||||||||||| Sbjct: 7027 atcaccgtcctcgtcgtcgc 7046
>gb|AE007937.1| Agrobacterium tumefaciens str. C58 plasmid Ti, section 15 of 20 of the complete sequence Length = 10168 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 atcaccgtcctcgtcgtcgc 316 |||||||||||||||||||| Sbjct: 7102 atcaccgtcctcgtcgtcgc 7121
>gb|DQ143963.2| Streptomyces rimosus oxytetracycline gene cluster, complete sequence Length = 25222 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 catcaccgtcctcgtcgtcg 315 |||||||||||||||||||| Sbjct: 25004 catcaccgtcctcgtcgtcg 24985
>ref|XM_567987.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNL04360) partial mRNA Length = 2262 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 cgaggacgaggaggacgatg 125 |||||||||||||||||||| Sbjct: 243 cgaggacgaggaggacgatg 262
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 cggcggccgcacgctgcaga 363 |||||||||||||||||||| Sbjct: 3790833 cggcggccgcacgctgcaga 3790852
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gttcaacaagctgctcacgc 258 |||||||||||||||||||| Sbjct: 3487299 gttcaacaagctgctcacgc 3487280
>gb|AC158585.3| Mus musculus chromosome 5, clone RP24-250F5, complete sequence Length = 158066 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tacaacatcaccaagatcct 214 |||||||||||||||||||| Sbjct: 152863 tacaacatcaccaagatcct 152844
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 tctcgccggcggcggccgca 354 |||||||||||||||||||| Sbjct: 1753364 tctcgccggcggcggccgca 1753383
>emb|BX666059.13| Zebrafish DNA sequence from clone DKEYP-108D9 in linkage group 15, complete sequence Length = 121448 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tcagtgatttttcagtggtg 40 |||||||||||||||||||| Sbjct: 33797 tcagtgatttttcagtggtg 33816
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gttcaacaagctgctcacgc 258 |||||||||||||||||||| Sbjct: 2117707 gttcaacaagctgctcacgc 2117726 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 tcgccggcggcggccgcacg 356 |||||||||||||||||||| Sbjct: 1959930 tcgccggcggcggccgcacg 1959911
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 37 ggtgctgcccagctcagtgctctccacc 64 ||||||||||| |||||||| ||||||| Sbjct: 585743 ggtgctgcccacctcagtgcgctccacc 585716
>gb|AC091177.3| Homo sapiens chromosome 17, clone CTD-3098J15, complete sequence Length = 25973 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tacaccatcagtgatttttc 33 |||||||||||||||||||| Sbjct: 19057 tacaccatcagtgatttttc 19076
>gb|AF375976.1|AF375976 Bovine herpesvirus 2 glycoprotein H gene, complete cds Length = 2604 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 aagcgccgcaccatcaccgt 304 |||||||||||||||||||| Sbjct: 78 aagcgccgcaccatcaccgt 97
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 cacgtcctcgtcgactactacggc 410 ||||||||||||||||| |||||| Sbjct: 831165 cacgtcctcgtcgactattacggc 831188
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 caccgaggacgaggaggacgatgg 126 |||||| ||||||||||||||||| Sbjct: 13953041 caccgacgacgaggaggacgatgg 13953064
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 363 accatccgccacatgctccagattcacgtcctcgtcgactactacggc 410 |||||||||||||| ||| | ||| |||||||||||||||||||| Sbjct: 3601157 accatccgccacatcctctccctccacatcctcgtcgactactacggc 3601204
>gb|AC130324.21| Homo sapiens chromosome 17, clone RP13-753N3, complete sequence Length = 153520 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tacaccatcagtgatttttc 33 |||||||||||||||||||| Sbjct: 2173 tacaccatcagtgatttttc 2192
>dbj|AP005587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0499G10 Length = 158375 Score = 40.1 bits (20), Expect = 5.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 363 accatccgccacatgctccagattcacgtcctcgtcgactactacggc 410 |||||||||||||| ||| | ||| |||||||||||||||||||| Sbjct: 86932 accatccgccacatcctctccctccacatcctcgtcgactactacggc 86979
>dbj|AP005578.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1695_A02 Length = 156214 Score = 40.1 bits (20), Expect = 5.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 363 accatccgccacatgctccagattcacgtcctcgtcgactactacggc 410 |||||||||||||| ||| | ||| |||||||||||||||||||| Sbjct: 9418 accatccgccacatcctctccctccacatcctcgtcgactactacggc 9465
>gb|AY943953.1| Streptomyces sp. FQ1 plasmid pFP1, complete sequence Length = 39360 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 gtctcgccggcggcggccgc 353 |||||||||||||||||||| Sbjct: 36734 gtctcgccggcggcggccgc 36715
>ref|XM_318561.2| Anopheles gambiae str. PEST ENSANGP00000019607 (ENSANGG00000017118), partial mRNA Length = 15318 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 tcaccgtcctcgtcgtcgcc 317 |||||||||||||||||||| Sbjct: 13955 tcaccgtcctcgtcgtcgcc 13936
>ref|XM_318563.2| Anopheles gambiae str. PEST ENSANGP00000023306 (ENSANGG00000017118), partial mRNA Length = 15318 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 tcaccgtcctcgtcgtcgcc 317 |||||||||||||||||||| Sbjct: 13955 tcaccgtcctcgtcgtcgcc 13936
>ref|XM_312631.2| Anopheles gambiae str. PEST ENSANGP00000015368 (ENSANGG00000012879), partial mRNA Length = 1793 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 tcaccgtcctcgtcgtcgcc 317 |||||||||||||||||||| Sbjct: 1189 tcaccgtcctcgtcgtcgcc 1170
>dbj|AK105777.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F09, full insert sequence Length = 1539 Score = 40.1 bits (20), Expect = 5.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 363 accatccgccacatgctccagattcacgtcctcgtcgactactacggc 410 |||||||||||||| ||| | ||| |||||||||||||||||||| Sbjct: 354 accatccgccacatcctctccctccacatcctcgtcgactactacggc 401
>emb|AJ327519.1|HSA327519 Homo sapiens genomic sequence surrounding NotI site, clone NL6-BE13R Length = 719 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 gtctcgccggcggcggccgc 353 |||||||||||||||||||| Sbjct: 20 gtctcgccggcggcggccgc 1
>dbj|AK068535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151B22, full insert sequence Length = 1489 Score = 40.1 bits (20), Expect = 5.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 363 accatccgccacatgctccagattcacgtcctcgtcgactactacggc 410 |||||||||||||| ||| | ||| |||||||||||||||||||| Sbjct: 329 accatccgccacatcctctccctccacatcctcgtcgactactacggc 376
>dbj|AK061377.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-G08, full insert sequence Length = 1467 Score = 40.1 bits (20), Expect = 5.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 363 accatccgccacatgctccagattcacgtcctcgtcgactactacggc 410 |||||||||||||| ||| | ||| |||||||||||||||||||| Sbjct: 282 accatccgccacatcctctccctccacatcctcgtcgactactacggc 329
>gb|AC171062.5| Rhesus Macaque BAC CH250-364H15 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 164174 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 cagtggtgctgcccagctca 52 |||||||||||||||||||| Sbjct: 39760 cagtggtgctgcccagctca 39779
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 caccgaggacgaggaggacgatgg 126 |||||| ||||||||||||||||| Sbjct: 13960383 caccgacgacgaggaggacgatgg 13960406
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 accgaggacgaggaggacga 123 |||||||||||||||||||| Sbjct: 2048356 accgaggacgaggaggacga 2048337 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,637,921 Number of Sequences: 3902068 Number of extensions: 2637921 Number of successful extensions: 70872 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 69495 Number of HSP's gapped (non-prelim): 1368 length of query: 412 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 390 effective length of database: 17,147,199,772 effective search space: 6687407911080 effective search space used: 6687407911080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
