Clone Information

BLAST Search Result

Clone Name	bast04e10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_482061.1\| Oryza sativa (japonica cultivar-group), mRNA	137	3e-29
2	dbj\|AK106935.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	137	3e-29
3	dbj\|AK072407.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	137	3e-29
4	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	94	4e-16
5	dbj\|AP004465.3\| Oryza sativa (japonica cultivar-group) genomic D...	94	4e-16
6	gb\|AY104194.1\| Zea mays PCO130091 mRNA sequence	92	2e-15
7	gb\|AC021893.18\|AC021893 Genomic Sequence for Oryza sativa, Nippo...	50	0.006
8	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	50	0.006
9	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	50	0.006
10	gb\|AC123072.4\| Mus musculus BAC clone RP23-87D8 from chromosome ...	44	0.34
11	gb\|AC127433.1\| Mus musculus BAC clone RP23-151I7 from 1, complet...	44	0.34
12	gb\|AC158655.4\| Mus musculus BAC RP23-406J21 (Roswell Park Cance...	44	0.34
13	gb\|AC091472.2\| Mus musculus chromosome X clones RP21-90B15, RP21...	42	1.3
14	gb\|AC149665.2\| Bos taurus BAC CH240-60O13 (Children's Hospital ...	42	1.3
15	gb\|AC123848.4\| Mus musculus BAC clone RP23-459I1 from chromosome...	42	1.3
16	gb\|AC122803.4\| Mus musculus BAC clone RP23-292K9 from 17, comple...	42	1.3
17	gb\|AC122140.2\| Mus musculus BAC clone RP24-270F2 from 17, comple...	42	1.3
18	gb\|AC156244.2\| Xenopus tropicalis clone CH216-92I18, complete se...	42	1.3
19	gb\|AC023405.6\| Homo sapiens chromosome 8, clone RP11-199K17, com...	42	1.3
20	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.3
21	gb\|AC023762.8\| Homo sapiens chromosome 8, clone RP11-401N18, com...	42	1.3
22	gb\|AF513654.1\| Aphanocalyx cynometroides 18S ribosomal RNA gene,...	42	1.3
23	dbj\|AP005872.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.3
24	emb\|AJ249779.1\|YPE249779 Yersinia pestis plasmid pIP1203, aph(3'...	42	1.3
25	gb\|AC151475.1\| Mus musculus BAC clone RP23-283P1 from 5, complet...	42	1.3
26	gb\|AC002500.1\|AC002500 Human Cosmid g5129z101 from 7q31.3, compl...	42	1.3
27	emb\|AL672002.14\| Mouse DNA sequence from clone RP23-252M19 on ch...	42	1.3
28	gb\|AC113450.20\| Mus musculus chromosome 7, clone RP24-360B13, co...	40	5.3
29	gb\|AY545995.1\| Streptomyces tubercidicus cytochrome P450 monooxy...	40	5.3
30	gb\|AC124664.14\| Mus musculus chromosome 1, clone RP23-103B18, co...	40	5.3
31	gb\|AC115896.9\| Mus musculus chromosome 1, clone RP24-443M8, comp...	40	5.3
32	gb\|AC156605.13\| Mus musculus chromosome 7, clone RP23-305G5, com...	40	5.3
33	gb\|AC162285.6\| Mus musculus chromosome 7, clone RP23-312O8, comp...	40	5.3
34	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	5.3
35	ref\|XM_978104.1\| PREDICTED: Mus musculus RIKEN cDNA D130048C09 g...	40	5.3
36	ref\|XM_983538.1\| PREDICTED: Mus musculus RIKEN cDNA D130048C09 g...	40	5.3
37	ref\|XM_986209.1\| PREDICTED: Mus musculus RIKEN cDNA D130048C09 g...	40	5.3
38	gb\|AC122806.4\| Mus musculus BAC clone RP23-297C11 from 8, comple...	40	5.3
39	gb\|AC107859.7\| Mus musculus chromosome 15, clone RP23-19C9, comp...	40	5.3
40	emb\|AL390295.10\| Human DNA sequence from clone RP11-254D22 on ch...	40	5.3
41	emb\|AL359957.44\| Human DNA sequence from clone RP11-62O22 on chr...	40	5.3
42	emb\|AL162711.17\| Human DNA sequence from clone RP11-144L2 on chr...	40	5.3
43	emb\|AL645910.8\| Mouse DNA sequence from clone RP23-173M6 on chro...	40	5.3
44	emb\|AL592102.1\|LISINP100 Listeria innocua plasmid pLI100, comple...	40	5.3
45	gb\|AC099567.2\| Homo sapiens chromosome 1 clone RP5-936J12, compl...	40	5.3
46	emb\|CR590020.1\| full-length cDNA clone CS0DI023YL19 of Placenta ...	40	5.3
47	gb\|AC087116.13\| Mus Musculus Strain C57BL6/J Chromosome 15~RP23-...	40	5.3
48	gb\|AC103891.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.3
49	gb\|AC004671.1\| Homo sapiens 12p13.3 PAC RPCI3-340I3 (Roswell Par...	40	5.3
50	gb\|AC091958.3\| Homo sapiens chromosome 5 clone RP11-447B18, comp...	40	5.3
51	gb\|AC034204.6\| Homo sapiens chromosome 5 clone CTB-192J21, compl...	40	5.3
52	gb\|AC133096.3\| Mus musculus BAC clone RP23-271C13 from chromosom...	40	5.3
53	gb\|AC034243.7\| Homo sapiens chromosome 5 clone RP1-204O11, compl...	40	5.3
54	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.3
55	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.3
56	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.3
57	gb\|AC068888.35\| Homo sapiens 12 BAC RP11-983P16 (Roswell Park Ca...	40	5.3
58	gb\|AC010629.8\| Homo sapiens chromosome 5 clone CTD-2213L16, comp...	40	5.3
59	gb\|CP000252.1\| Syntrophus aciditrophicus SB, complete genome	40	5.3
60	gb\|AC009803.17\| Homo sapiens 12 BAC RP11-1028N23 (Roswell Park C...	40	5.3
61	dbj\|AP008226.1\| Thermus thermophilus HB8 genomic DNA, complete g...	40	5.3
62	emb\|AJ011077.1\|HSA011077 Homo sapiens alphaE-catenin gene, 5'UTR	40	5.3
63	dbj\|AP004314.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.3
64	dbj\|AP005825.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.3
65	gb\|CP000033.1\| Lactobacillus acidophilus NCFM, complete genome	40	5.3
66	gb\|AC154557.2\| Mus musculus BAC clone RP23-425M9 from 17, comple...	40	5.3
67	gb\|AC102243.14\| Mus musculus chromosome 18, clone RP24-141G8, co...	40	5.3
68	dbj\|AP003829.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.3
69	gb\|AE017221.1\| Thermus thermophilus HB27, complete genome	40	5.3
70	emb\|CT030155.10\| Mouse DNA sequence from clone RP23-425N11 on ch...	40	5.3
71	gb\|AC153524.3\| Mus musculus 10 BAC RP23-349H12 (Roswell Park Can...	40	5.3

>ref|XM_482061.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 591

 Score =  137 bits (69), Expect = 3e-29
 Identities = 102/113 (90%)
 Strand = Plus / Plus

                                                                       
Query: 285 atggattcagtgccactcactgctgaagctattgcctttactgagaaaaagatggacatg 344
           ||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 1   atggagtcagtgccactaactgctgaagctattgcttttaccgagaaaaagatggacatg 60

                                                                
Query: 345 actctggaggatattattaagatgtcaaagaaaaaagttcctgcaggcaagaa 397
           ||| | || ||||||||||||||||||||||||||   ||||| |||||||||
Sbjct: 61  actttagatgatattattaagatgtcaaagaaaaagaatcctggaggcaagaa 113

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>dbj|AK106935.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-C07, full
           insert sequence
          Length = 1233

 Score =  137 bits (69), Expect = 3e-29
 Identities = 102/113 (90%)
 Strand = Plus / Plus

                                                                       
Query: 285 atggattcagtgccactcactgctgaagctattgcctttactgagaaaaagatggacatg 344
           ||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 154 atggagtcagtgccactaactgctgaagctattgcttttaccgagaaaaagatggacatg 213

                                                                
Query: 345 actctggaggatattattaagatgtcaaagaaaaaagttcctgcaggcaagaa 397
           ||| | || ||||||||||||||||||||||||||   ||||| |||||||||
Sbjct: 214 actttagatgatattattaagatgtcaaagaaaaagaatcctggaggcaagaa 266

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>dbj|AK072407.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081K18, full
           insert sequence
          Length = 2497

 Score =  137 bits (69), Expect = 3e-29
 Identities = 102/113 (90%)
 Strand = Plus / Plus

                                                                       
Query: 285 atggattcagtgccactcactgctgaagctattgcctttactgagaaaaagatggacatg 344
           ||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 160 atggagtcagtgccactaactgctgaagctattgcttttaccgagaaaaagatggacatg 219

                                                                
Query: 345 actctggaggatattattaagatgtcaaagaaaaaagttcctgcaggcaagaa 397
           ||| | || ||||||||||||||||||||||||||   ||||| |||||||||
Sbjct: 220 actttagatgatattattaagatgtcaaagaaaaagaatcctggaggcaagaa 272

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 59/63 (93%)
 Strand = Plus / Minus

                                                                            
Query: 285      atggattcagtgccactcactgctgaagctattgcctttactgagaaaaagatggacatg 344
                ||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 17514977 atggagtcagtgccactaactgctgaagctattgcttttaccgagaaaaagatggacatg 17514918

                   
Query: 345      act 347
                |||
Sbjct: 17514917 act 17514915



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                            
Query: 354      gatattattaagatgtcaaagaaaaaagttcctgcaggcaagaa 397
                ||||||||||||||||||||||||||   ||||| |||||||||
Sbjct: 17514811 gatattattaagatgtcaaagaaaaagaatcctggaggcaagaa 17514768

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>dbj|AP004465.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0690C12
          Length = 139693

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 59/63 (93%)
 Strand = Plus / Minus

                                                                          
Query: 285    atggattcagtgccactcactgctgaagctattgcctttactgagaaaaagatggacatg 344
              ||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 125822 atggagtcagtgccactaactgctgaagctattgcttttaccgagaaaaagatggacatg 125763

                 
Query: 345    act 347
              |||
Sbjct: 125762 act 125760



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                          
Query: 354    gatattattaagatgtcaaagaaaaaagttcctgcaggcaagaa 397
              ||||||||||||||||||||||||||   ||||| |||||||||
Sbjct: 125656 gatattattaagatgtcaaagaaaaagaatcctggaggcaagaa 125613

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>gb|AY104194.1| Zea mays PCO130091 mRNA sequence
          Length = 1081

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                       
Query: 300 ctcactgctgaagctattgcctttactgagaaaaagatggacatgactctggaggatatt 359
           ||||| |||||||| ||||| | ||| |||||||||||||||||| || |||||||||| 
Sbjct: 177 ctcacagctgaagcaattgcttatacagagaaaaagatggacatggctttggaggatata 236

                                                 
Query: 360 attaagatgtcaaagaaaaaagttcctgcaggcaagaa 397
           ||||| ||||||||||||||   ||||| |||||||||
Sbjct: 237 attaaaatgtcaaagaaaaagaatcctggaggcaagaa 274

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>gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0060A14, from chromosome 10, complete sequence
          Length = 151343

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 291   tcagtgccactcactgctgaagctattgc 319
             ||||||||||| |||||||||||||||||
Sbjct: 82885 tcagtgccactaactgctgaagctattgc 82857

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 291      tcagtgccactcactgctgaagctattgc 319
                ||||||||||| |||||||||||||||||
Sbjct: 13390508 tcagtgccactaactgctgaagctattgc 13390480

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 291      tcagtgccactcactgctgaagctattgc 319
                ||||||||||| |||||||||||||||||
Sbjct: 13397848 tcagtgccactaactgctgaagctattgc 13397820

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>gb|AC123072.4| Mus musculus BAC clone RP23-87D8 from chromosome 1, complete sequence
          Length = 248675

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 81    ccctgccccctcccccttccct 102
             ||||||||||||||||||||||
Sbjct: 76887 ccctgccccctcccccttccct 76866

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>gb|AC127433.1| Mus musculus BAC clone RP23-151I7 from 1, complete sequence
          Length = 228489

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 81     ccctgccccctcccccttccct 102
              ||||||||||||||||||||||
Sbjct: 203774 ccctgccccctcccccttccct 203753

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>gb|AC158655.4| Mus musculus  BAC RP23-406J21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 201519

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 83    ctgccccctcccccttccctcc 104
             ||||||||||||||||||||||
Sbjct: 98511 ctgccccctcccccttccctcc 98532

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>gb|AC091472.2| Mus musculus chromosome X clones RP21-90B15, RP21-12I6 complete sequence
          Length = 193449

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 81     ccctgccccctcccccttccc 101
              |||||||||||||||||||||
Sbjct: 113739 ccctgccccctcccccttccc 113719

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>gb|AC149665.2| Bos taurus  BAC CH240-60O13 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 197131

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 83    ctgccccctcccccttccctc 103
             |||||||||||||||||||||
Sbjct: 12505 ctgccccctcccccttccctc 12485

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>gb|AC123848.4| Mus musculus BAC clone RP23-459I1 from chromosome 5, complete sequence
          Length = 184292

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 114   gcaggcccttcctgctgttcc 134
             |||||||||||||||||||||
Sbjct: 79579 gcaggcccttcctgctgttcc 79559

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>gb|AC122803.4| Mus musculus BAC clone RP23-292K9 from 17, complete sequence
          Length = 149990

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 234    tggagaggcttggagctgctt 254
              |||||||||||||||||||||
Sbjct: 148417 tggagaggcttggagctgctt 148397

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>gb|AC122140.2| Mus musculus BAC clone RP24-270F2 from 17, complete sequence
          Length = 200761

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 234   tggagaggcttggagctgctt 254
             |||||||||||||||||||||
Sbjct: 17253 tggagaggcttggagctgctt 17233

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>gb|AC156244.2| Xenopus tropicalis clone CH216-92I18, complete sequence
          Length = 140675

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 82    cctgccccctcccccttccct 102
             |||||||||||||||||||||
Sbjct: 44983 cctgccccctcccccttccct 45003

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>gb|AC023405.6| Homo sapiens chromosome 8, clone RP11-199K17, complete sequence
          Length = 151859

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 352    aggatattattaagatgtcaa 372
              |||||||||||||||||||||
Sbjct: 144242 aggatattattaagatgtcaa 144222

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 78       ccgccctgccccctcccccttccct 102
                |||||| ||||||||||||||||||
Sbjct: 12285962 ccgcccggccccctcccccttccct 12285986

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>gb|AC023762.8| Homo sapiens chromosome 8, clone RP11-401N18, complete sequence
          Length = 120800

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 352   aggatattattaagatgtcaa 372
             |||||||||||||||||||||
Sbjct: 86833 aggatattattaagatgtcaa 86853

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>gb|AF513654.1| Aphanocalyx cynometroides 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene
           and internal transcribed spacer 2, complete sequence;
           and 28S ribosomal RNA gene, partial sequence
          Length = 746

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  ccgccctgccccctccccctt 98
           |||||||||||||||||||||
Sbjct: 587 ccgccctgccccctccccctt 567

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>dbj|AP005872.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1168F12
          Length = 141524

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 78    ccgccctgccccctcccccttccct 102
             |||||| ||||||||||||||||||
Sbjct: 69516 ccgcccggccccctcccccttccct 69540

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>emb|AJ249779.1|YPE249779 Yersinia pestis plasmid pIP1203, aph(3'')-Ib gene and aph(6)-Id
           gene for aminoglycoside phosphotransferases, APH(3'')-Ib
           and APH(6)-Id
          Length = 2745

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 186 cggccgtccggagctgcgccg 206
           |||||||||||||||||||||
Sbjct: 137 cggccgtccggagctgcgccg 117

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>gb|AC151475.1| Mus musculus BAC clone RP23-283P1 from 5, complete sequence
          Length = 171663

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 114    gcaggcccttcctgctgttcc 134
              |||||||||||||||||||||
Sbjct: 139581 gcaggcccttcctgctgttcc 139561

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>gb|AC002500.1|AC002500 Human Cosmid g5129z101 from 7q31.3, complete sequence
          Length = 41084

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 333   aagatggacatgactctggaggatattat 361
             |||||| |||||| |||||||||||||||
Sbjct: 34999 aagatgtacatgaatctggaggatattat 35027

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>emb|AL672002.14| Mouse DNA sequence from clone RP23-252M19 on chromosome X, complete
              sequence
          Length = 225712

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 81     ccctgccccctcccccttccc 101
              |||||||||||||||||||||
Sbjct: 117468 ccctgccccctcccccttccc 117448

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>gb|AC113450.20| Mus musculus chromosome 7, clone RP24-360B13, complete sequence
          Length = 127454

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 357   attattaagatgtcaaagaaaaaa 380
             ||||||||||||| ||||||||||
Sbjct: 17208 attattaagatgtaaaagaaaaaa 17231

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>gb|AY545995.1| Streptomyces tubercidicus cytochrome P450 monooxygenase CYP107Z12
            (ema1) gene, complete cds
          Length = 3629

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 81   ccctgccccctcccccttcc 100
            ||||||||||||||||||||
Sbjct: 2788 ccctgccccctcccccttcc 2807

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>gb|AC124664.14| Mus musculus chromosome 1, clone RP23-103B18, complete sequence
          Length = 220456

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    cctgccccctcccccttccc 101
             ||||||||||||||||||||
Sbjct: 52272 cctgccccctcccccttccc 52291

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>gb|AC115896.9| Mus musculus chromosome 1, clone RP24-443M8, complete sequence
          Length = 203303

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    cctgccccctcccccttccc 101
             ||||||||||||||||||||
Sbjct: 17649 cctgccccctcccccttccc 17630

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>gb|AC156605.13| Mus musculus chromosome 7, clone RP23-305G5, complete sequence
          Length = 234816

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     ctgccccctcccccttccct 102
              ||||||||||||||||||||
Sbjct: 149287 ctgccccctcccccttccct 149306

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>gb|AC162285.6| Mus musculus chromosome 7, clone RP23-312O8, complete sequence
          Length = 190344

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 357   attattaagatgtcaaagaaaaaa 380
             ||||||||||||| ||||||||||
Sbjct: 35347 attattaagatgtaaaagaaaaaa 35370

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 85      gccccctcccccttccctcc 104
               ||||||||||||||||||||
Sbjct: 7018912 gccccctcccccttccctcc 7018931

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>ref|XM_978104.1| PREDICTED: Mus musculus RIKEN cDNA D130048C09 gene (D130048C09Rik),
            mRNA
          Length = 2995

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   ccgccgccctgccccctccc 94
            ||||||||||||||||||||
Sbjct: 2957 ccgccgccctgccccctccc 2976

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>ref|XM_983538.1| PREDICTED: Mus musculus RIKEN cDNA D130048C09 gene (D130048C09Rik),
            mRNA
          Length = 2995

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   ccgccgccctgccccctccc 94
            ||||||||||||||||||||
Sbjct: 2957 ccgccgccctgccccctccc 2976

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>ref|XM_986209.1| PREDICTED: Mus musculus RIKEN cDNA D130048C09 gene (D130048C09Rik),
            mRNA
          Length = 2995

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   ccgccgccctgccccctccc 94
            ||||||||||||||||||||
Sbjct: 2957 ccgccgccctgccccctccc 2976

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>gb|AC122806.4| Mus musculus BAC clone RP23-297C11 from 8, complete sequence
          Length = 184206

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     cctgccccctcccccttccc 101
              ||||||||||||||||||||
Sbjct: 162754 cctgccccctcccccttccc 162735

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>gb|AC107859.7| Mus musculus chromosome 15, clone RP23-19C9, complete sequence
          Length = 208355

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     gccccctcccccttccctcc 104
              ||||||||||||||||||||
Sbjct: 158605 gccccctcccccttccctcc 158624

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>emb|AL390295.10| Human DNA sequence from clone RP11-254D22 on chromosome 13, complete
             sequence
          Length = 98339

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 371   aaagaaaaaagttcctgcaggcaa 394
             |||||||| |||||||||||||||
Sbjct: 12224 aaagaaaacagttcctgcaggcaa 12247

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>emb|AL359957.44| Human DNA sequence from clone RP11-62O22 on chromosome 10 Contains part
              of a novel gene (KIAA0934) and a CpG island, complete
              sequence
          Length = 137511

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     ccctgccccctcccccttcc 100
              ||||||||||||||||||||
Sbjct: 101196 ccctgccccctcccccttcc 101177

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>emb|AL162711.17| Human DNA sequence from clone RP11-144L2 on chromosome 13 Contains a
             novel gene and two CpG islands, complete sequence
          Length = 29742

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   aattggagaggcttggagct 250
             ||||||||||||||||||||
Sbjct: 23162 aattggagaggcttggagct 23181

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>emb|AL645910.8| Mouse DNA sequence from clone RP23-173M6 on chromosome 11 Contains the 5'
              end of a novel gene, the Mtmr3 gene for myotubularin
              related protein 3 and a glyceraldehyde-3-phosphate
              dehydrogenase (Gapd) pseudogene, complete sequence
          Length = 204413

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 81     ccctgccccctcccccttccctcc 104
              |||| |||||||||||||||||||
Sbjct: 144134 ccctcccccctcccccttccctcc 144111

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>emb|AL592102.1|LISINP100 Listeria innocua plasmid pLI100, complete sequence
          Length = 81905

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   aaacaagatatggattcagt 295
             ||||||||||||||||||||
Sbjct: 50021 aaacaagatatggattcagt 50040

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>gb|AC099567.2| Homo sapiens chromosome 1 clone RP5-936J12, complete sequence
          Length = 171400

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 364  agatgtcaaagaaaaaagtt 383
            ||||||||||||||||||||
Sbjct: 4244 agatgtcaaagaaaaaagtt 4263

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>emb|CR590020.1| full-length cDNA clone CS0DI023YL19 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1660

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 218 catcagcattgtcaattggagagg 241
           ||||||||||||| ||||||||||
Sbjct: 605 catcagcattgtccattggagagg 628

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>gb|AC087116.13| Mus Musculus Strain C57BL6/J Chromosome 15~RP23-336B1, complete
            sequence
          Length = 218476

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   gccccctcccccttccctcc 104
            ||||||||||||||||||||
Sbjct: 6926 gccccctcccccttccctcc 6945

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>gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1175C11,
             complete sequence
          Length = 123620

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    gccccctcccccttccctcc 104
             ||||||||||||||||||||
Sbjct: 63453 gccccctcccccttccctcc 63434

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>gb|AC004671.1| Homo sapiens 12p13.3 PAC RPCI3-340I3 (Roswell Park Cancer Institute
             Human PAC Library) complete sequence
          Length = 141266

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    ggagtctccgccgccctgccccct 91
             |||||||||||||||| |||||||
Sbjct: 89470 ggagtctccgccgcccggccccct 89447

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>gb|AC091958.3| Homo sapiens chromosome 5 clone RP11-447B18, complete sequence
          Length = 123567

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 80     gccctgccccctcccccttccctc 103
              ||||||||||||||| ||||||||
Sbjct: 119190 gccctgccccctcccacttccctc 119213

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>gb|AC034204.6| Homo sapiens chromosome 5 clone CTB-192J21, complete sequence
          Length = 61027

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    cctgccccctcccccttccc 101
             ||||||||||||||||||||
Sbjct: 34264 cctgccccctcccccttccc 34283

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>gb|AC133096.3| Mus musculus BAC clone RP23-271C13 from chromosome 1, complete sequence
          Length = 195512

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    ccgccgccctgccccctccc 94
             ||||||||||||||||||||
Sbjct: 47901 ccgccgccctgccccctccc 47920

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>gb|AC034243.7| Homo sapiens chromosome 5 clone RP1-204O11, complete sequence
          Length = 191308

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    cctgccccctcccccttccc 101
             ||||||||||||||||||||
Sbjct: 46158 cctgccccctcccccttccc 46177

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 85      gccccctcccccttccctcc 104
               ||||||||||||||||||||
Sbjct: 2058424 gccccctcccccttccctcc 2058443

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 85      gccccctcccccttccctcc 104
               ||||||||||||||||||||
Sbjct: 7016807 gccccctcccccttccctcc 7016826

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 278      acaagatatggattcagtgc 297
                ||||||||||||||||||||
Sbjct: 29101949 acaagatatggattcagtgc 29101968

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>gb|AC068888.35| Homo sapiens 12 BAC RP11-983P16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 95824

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 218   catcagcattgtcaattggagagg 241
             ||||||||||||| ||||||||||
Sbjct: 27389 catcagcattgtccattggagagg 27412

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>gb|AC010629.8| Homo sapiens chromosome 5 clone CTD-2213L16, complete sequence
          Length = 82882

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 80   gccctgccccctcccccttccctc 103
            ||||||||||||||| ||||||||
Sbjct: 6137 gccctgccccctcccacttccctc 6160

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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    aaaaagatggacatgactct 349
              ||||||||||||||||||||
Sbjct: 794801 aaaaagatggacatgactct 794782

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>gb|AC009803.17| Homo sapiens 12 BAC RP11-1028N23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 186044

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 81     ccctgccccctcccccttccctcc 104
              |||| |||||||||||||||||||
Sbjct: 105145 ccctcccccctcccccttccctcc 105168

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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 85      gccccctcccccttccctcc 104
               ||||||||||||||||||||
Sbjct: 1732012 gccccctcccccttccctcc 1732031

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>emb|AJ011077.1|HSA011077 Homo sapiens alphaE-catenin gene, 5'UTR
          Length = 3405

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 82   cctgccccctcccccttccc 101
            ||||||||||||||||||||
Sbjct: 2279 cctgccccctcccccttccc 2298

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>dbj|AP004314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0495H05
          Length = 205595

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     gccccctcccccttccctcc 104
              ||||||||||||||||||||
Sbjct: 142721 gccccctcccccttccctcc 142740

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>dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0724B10
          Length = 169143

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 278    acaagatatggattcagtgc 297
              ||||||||||||||||||||
Sbjct: 148114 acaagatatggattcagtgc 148133

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>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome
          Length = 1993564

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 303    actgctgaagctattgcctttact 326
              ||||||||| ||||||||||||||
Sbjct: 838409 actgctgaaactattgcctttact 838432

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>gb|AC154557.2| Mus musculus BAC clone RP23-425M9 from 17, complete sequence
          Length = 186378

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    ccctgccccctcccccttccctcc 104
             |||| |||||||||||||||||||
Sbjct: 10846 ccctcccccctcccccttccctcc 10823

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>gb|AC102243.14| Mus musculus chromosome 18, clone RP24-141G8, complete sequence
          Length = 181246

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    ccctgccccctcccccttccctcc 104
             |||| |||||||||||||||||||
Sbjct: 63430 cccttccccctcccccttccctcc 63407

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>dbj|AP003829.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1417_E01
          Length = 118058

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    gccccctcccccttccctcc 104
             ||||||||||||||||||||
Sbjct: 14217 gccccctcccccttccctcc 14236

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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 85      gccccctcccccttccctcc 104
               ||||||||||||||||||||
Sbjct: 1421563 gccccctcccccttccctcc 1421582

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>emb|CT030155.10| Mouse DNA sequence from clone RP23-425N11 on chromosome 17, complete
             sequence
          Length = 189713

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    ccctgccccctcccccttccctcc 104
             |||| |||||||||||||||||||
Sbjct: 44737 ccctcccccctcccccttccctcc 44714

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>gb|AC153524.3| Mus musculus 10 BAC RP23-349H12 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 167574

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    ccctgccccctcccccttccctcc 104
             |||| |||||||||||||||||||
Sbjct: 57976 cccttccccctcccccttccctcc 57953


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,965,754
Number of Sequences: 3902068
Number of extensions: 3965754
Number of successful extensions: 94568
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94049
Number of HSP's gapped (non-prelim): 519
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result