ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast04e08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475849.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1566 Score = 281 bits (142), Expect = 9e-73 Identities = 270/313 (86%), Gaps = 6/313 (1%) Strand = Plus / Plus Query: 126 gtccgctgcgccaccgacgcggccgtccccaccaacaagcaccggcgcgcggcggacgag 185 |||||||||||||||||||| |||| ||| || ||||||||||||||| |||||| Sbjct: 115 gtccgctgcgccaccgacgccgccg------ccaccaggcaccggcgcgcggccgacgag 168 Query: 186 gacatccgggaggaggcggcgcggcaccgggccccggccaacgacttctccgcctggtac 245 |||||||||||||||||||| ||||||| |||||| | || |||||||||| |||||| Sbjct: 169 aacatccgggaggaggcggcgaggcaccgcgccccgaaccacaacttctccgcgtggtac 228 Query: 246 gagcccttcccgccgggtcccgggtccgccgccgacgagcgctactccctggacgagatc 305 | |||||||||||| | ||| || | ||||||||||||||||||||||||||||| Sbjct: 229 gcgcccttcccgcccgcccccaacggcgaccccgacgagcgctactccctggacgagatc 288 Query: 306 gtgtaccgctccagctcgggcggcctgctcgacgtgcgccacgacattgcggccctggcg 365 || ||||||||||||||||||||||| |||||||||||||||||||| | || || || Sbjct: 289 gtctaccgctccagctcgggcggcctcctcgacgtgcgccacgacatggacgcgctcgcc 348 Query: 366 cgctacccggggtcctactggcgggacctcttcgactcccgcgtcggccgcaccgtctgg 425 |||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct: 349 cgcttcccgggctcctactggcgcgacctcttcgactcccgcgtcggccgcaccacctgg 408 Query: 426 ccctacggctccg 438 |||| |||||||| Sbjct: 409 cccttcggctccg 421
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03, complete sequence Length = 177861 Score = 281 bits (142), Expect = 9e-73 Identities = 270/313 (86%), Gaps = 6/313 (1%) Strand = Plus / Plus Query: 126 gtccgctgcgccaccgacgcggccgtccccaccaacaagcaccggcgcgcggcggacgag 185 |||||||||||||||||||| |||| ||| || ||||||||||||||| |||||| Sbjct: 1842 gtccgctgcgccaccgacgccgccg------ccaccaggcaccggcgcgcggccgacgag 1895 Query: 186 gacatccgggaggaggcggcgcggcaccgggccccggccaacgacttctccgcctggtac 245 |||||||||||||||||||| ||||||| |||||| | || |||||||||| |||||| Sbjct: 1896 aacatccgggaggaggcggcgaggcaccgcgccccgaaccacaacttctccgcgtggtac 1955 Query: 246 gagcccttcccgccgggtcccgggtccgccgccgacgagcgctactccctggacgagatc 305 | |||||||||||| | ||| || | ||||||||||||||||||||||||||||| Sbjct: 1956 gcgcccttcccgcccgcccccaacggcgaccccgacgagcgctactccctggacgagatc 2015 Query: 306 gtgtaccgctccagctcgggcggcctgctcgacgtgcgccacgacattgcggccctggcg 365 || ||||||||||||||||||||||| |||||||||||||||||||| | || || || Sbjct: 2016 gtctaccgctccagctcgggcggcctcctcgacgtgcgccacgacatggacgcgctcgcc 2075 Query: 366 cgctacccggggtcctactggcgggacctcttcgactcccgcgtcggccgcaccgtctgg 425 |||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct: 2076 cgcttcccgggctcctactggcgcgacctcttcgactcccgcgtcggccgcaccacctgg 2135 Query: 426 ccctacggctccg 438 |||| |||||||| Sbjct: 2136 cccttcggctccg 2148
>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05, complete sequence Length = 141715 Score = 281 bits (142), Expect = 9e-73 Identities = 270/313 (86%), Gaps = 6/313 (1%) Strand = Plus / Plus Query: 126 gtccgctgcgccaccgacgcggccgtccccaccaacaagcaccggcgcgcggcggacgag 185 |||||||||||||||||||| |||| ||| || ||||||||||||||| |||||| Sbjct: 77027 gtccgctgcgccaccgacgccgccg------ccaccaggcaccggcgcgcggccgacgag 77080 Query: 186 gacatccgggaggaggcggcgcggcaccgggccccggccaacgacttctccgcctggtac 245 |||||||||||||||||||| ||||||| |||||| | || |||||||||| |||||| Sbjct: 77081 aacatccgggaggaggcggcgaggcaccgcgccccgaaccacaacttctccgcgtggtac 77140 Query: 246 gagcccttcccgccgggtcccgggtccgccgccgacgagcgctactccctggacgagatc 305 | |||||||||||| | ||| || | ||||||||||||||||||||||||||||| Sbjct: 77141 gcgcccttcccgcccgcccccaacggcgaccccgacgagcgctactccctggacgagatc 77200 Query: 306 gtgtaccgctccagctcgggcggcctgctcgacgtgcgccacgacattgcggccctggcg 365 || ||||||||||||||||||||||| |||||||||||||||||||| | || || || Sbjct: 77201 gtctaccgctccagctcgggcggcctcctcgacgtgcgccacgacatggacgcgctcgcc 77260 Query: 366 cgctacccggggtcctactggcgggacctcttcgactcccgcgtcggccgcaccgtctgg 425 |||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct: 77261 cgcttcccgggctcctactggcgcgacctcttcgactcccgcgtcggccgcaccacctgg 77320 Query: 426 ccctacggctccg 438 |||| |||||||| Sbjct: 77321 cccttcggctccg 77333
>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08, complete sequence Length = 166218 Score = 281 bits (142), Expect = 9e-73 Identities = 270/313 (86%), Gaps = 6/313 (1%) Strand = Plus / Plus Query: 126 gtccgctgcgccaccgacgcggccgtccccaccaacaagcaccggcgcgcggcggacgag 185 |||||||||||||||||||| |||| ||| || ||||||||||||||| |||||| Sbjct: 101530 gtccgctgcgccaccgacgccgccg------ccaccaggcaccggcgcgcggccgacgag 101583 Query: 186 gacatccgggaggaggcggcgcggcaccgggccccggccaacgacttctccgcctggtac 245 |||||||||||||||||||| ||||||| |||||| | || |||||||||| |||||| Sbjct: 101584 aacatccgggaggaggcggcgaggcaccgcgccccgaaccacaacttctccgcgtggtac 101643 Query: 246 gagcccttcccgccgggtcccgggtccgccgccgacgagcgctactccctggacgagatc 305 | |||||||||||| | ||| || | ||||||||||||||||||||||||||||| Sbjct: 101644 gcgcccttcccgcccgcccccaacggcgaccccgacgagcgctactccctggacgagatc 101703 Query: 306 gtgtaccgctccagctcgggcggcctgctcgacgtgcgccacgacattgcggccctggcg 365 || ||||||||||||||||||||||| |||||||||||||||||||| | || || || Sbjct: 101704 gtctaccgctccagctcgggcggcctcctcgacgtgcgccacgacatggacgcgctcgcc 101763 Query: 366 cgctacccggggtcctactggcgggacctcttcgactcccgcgtcggccgcaccgtctgg 425 |||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct: 101764 cgcttcccgggctcctactggcgcgacctcttcgactcccgcgtcggccgcaccacctgg 101823 Query: 426 ccctacggctccg 438 |||| |||||||| Sbjct: 101824 cccttcggctccg 101836
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 281 bits (142), Expect = 9e-73 Identities = 270/313 (86%), Gaps = 6/313 (1%) Strand = Plus / Plus Query: 126 gtccgctgcgccaccgacgcggccgtccccaccaacaagcaccggcgcgcggcggacgag 185 |||||||||||||||||||| |||| ||| || ||||||||||||||| |||||| Sbjct: 27070446 gtccgctgcgccaccgacgccgccg------ccaccaggcaccggcgcgcggccgacgag 27070499 Query: 186 gacatccgggaggaggcggcgcggcaccgggccccggccaacgacttctccgcctggtac 245 |||||||||||||||||||| ||||||| |||||| | || |||||||||| |||||| Sbjct: 27070500 aacatccgggaggaggcggcgaggcaccgcgccccgaaccacaacttctccgcgtggtac 27070559 Query: 246 gagcccttcccgccgggtcccgggtccgccgccgacgagcgctactccctggacgagatc 305 | |||||||||||| | ||| || | ||||||||||||||||||||||||||||| Sbjct: 27070560 gcgcccttcccgcccgcccccaacggcgaccccgacgagcgctactccctggacgagatc 27070619 Query: 306 gtgtaccgctccagctcgggcggcctgctcgacgtgcgccacgacattgcggccctggcg 365 || ||||||||||||||||||||||| |||||||||||||||||||| | || || || Sbjct: 27070620 gtctaccgctccagctcgggcggcctcctcgacgtgcgccacgacatggacgcgctcgcc 27070679 Query: 366 cgctacccggggtcctactggcgggacctcttcgactcccgcgtcggccgcaccgtctgg 425 |||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct: 27070680 cgcttcccgggctcctactggcgcgacctcttcgactcccgcgtcggccgcaccacctgg 27070739 Query: 426 ccctacggctccg 438 |||| |||||||| Sbjct: 27070740 cccttcggctccg 27070752
>dbj|AK101669.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058D04, full insert sequence Length = 1938 Score = 281 bits (142), Expect = 9e-73 Identities = 270/313 (86%), Gaps = 6/313 (1%) Strand = Plus / Plus Query: 126 gtccgctgcgccaccgacgcggccgtccccaccaacaagcaccggcgcgcggcggacgag 185 |||||||||||||||||||| |||| ||| || ||||||||||||||| |||||| Sbjct: 214 gtccgctgcgccaccgacgccgccg------ccaccaggcaccggcgcgcggccgacgag 267 Query: 186 gacatccgggaggaggcggcgcggcaccgggccccggccaacgacttctccgcctggtac 245 |||||||||||||||||||| ||||||| |||||| | || |||||||||| |||||| Sbjct: 268 aacatccgggaggaggcggcgaggcaccgcgccccgaaccacaacttctccgcgtggtac 327 Query: 246 gagcccttcccgccgggtcccgggtccgccgccgacgagcgctactccctggacgagatc 305 | |||||||||||| | ||| || | ||||||||||||||||||||||||||||| Sbjct: 328 gcgcccttcccgcccgcccccaacggcgaccccgacgagcgctactccctggacgagatc 387 Query: 306 gtgtaccgctccagctcgggcggcctgctcgacgtgcgccacgacattgcggccctggcg 365 || ||||||||||||||||||||||| |||||||||||||||||||| | || || || Sbjct: 388 gtctaccgctccagctcgggcggcctcctcgacgtgcgccacgacatggacgcgctcgcc 447 Query: 366 cgctacccggggtcctactggcgggacctcttcgactcccgcgtcggccgcaccgtctgg 425 |||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct: 448 cgcttcccgggctcctactggcgcgacctcttcgactcccgcgtcggccgcaccacctgg 507 Query: 426 ccctacggctccg 438 |||| |||||||| Sbjct: 508 cccttcggctccg 520
>dbj|AK109478.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F04, full insert sequence Length = 1876 Score = 274 bits (138), Expect = 2e-70 Identities = 269/313 (85%), Gaps = 6/313 (1%) Strand = Plus / Plus Query: 126 gtccgctgcgccaccgacgcggccgtccccaccaacaagcaccggcgcgcggcggacgag 185 |||||||||||||||||||| |||| ||| || ||||||||||||||| |||||| Sbjct: 165 gtccgctgcgccaccgacgccgccg------ccaccaggcaccggcgcgcggccgacgag 218 Query: 186 gacatccgggaggaggcggcgcggcaccgggccccggccaacgacttctccgcctggtac 245 |||||||||||||||||||| ||||||| |||||| | || || ||||||| |||||| Sbjct: 219 aacatccgggaggaggcggcgaggcaccgcgccccgaaccacaacctctccgcgtggtac 278 Query: 246 gagcccttcccgccgggtcccgggtccgccgccgacgagcgctactccctggacgagatc 305 | |||||||||||| | ||| || | ||||||||||||||||||||||||||||| Sbjct: 279 gcgcccttcccgcccgcccccaacggcgaccccgacgagcgctactccctggacgagatc 338 Query: 306 gtgtaccgctccagctcgggcggcctgctcgacgtgcgccacgacattgcggccctggcg 365 || ||||||||||||||||||||||| |||||||||||||||||||| | || || || Sbjct: 339 gtctaccgctccagctcgggcggcctcctcgacgtgcgccacgacatggacgcgctcgcc 398 Query: 366 cgctacccggggtcctactggcgggacctcttcgactcccgcgtcggccgcaccgtctgg 425 |||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct: 399 cgcttcccgggctcctactggcgcgacctcttcgactcccgcgtcggccgcaccacctgg 458 Query: 426 ccctacggctccg 438 |||| |||||||| Sbjct: 459 cccttcggctccg 471
>gb|BT018440.1| Zea mays clone EL01N0372H09.d mRNA sequence Length = 1857 Score = 268 bits (135), Expect = 1e-68 Identities = 240/275 (87%) Strand = Plus / Plus Query: 162 aagcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccgggccccg 221 |||||||| ||| | ||||| ||| ||||||| |||||||||||||||| ||| | |||| Sbjct: 188 aagcaccgccgcccagcggaggagaacatccgcgaggaggcggcgcggctccgaggcccg 247 Query: 222 gccaacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgac 281 ||| | | ||||| || |||||||||||||||||||||| ||||| || | | || Sbjct: 248 gcccagggtttctctgcgtggtacgagcccttcccgccggcgcccggcggcgacccgaac 307 Query: 282 gagcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtg 341 ||||||||||| ||||||||| |||| ||||||||||||||||| ||||| ||||||||| Sbjct: 308 gagcgctactcgctggacgaggtcgtctaccgctccagctcggggggcctcctcgacgtg 367 Query: 342 cgccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgac 401 ||||||||||| | ||| ||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 368 cgccacgacatggaggcgctggcccgctacccggggtcctactggcgtgacctcttcgac 427 Query: 402 tcccgcgtcggccgcaccgtctggccctacggctc 436 ||||||||||||||||||| ||||||||||||||| Sbjct: 428 tcccgcgtcggccgcaccgcctggccctacggctc 462
>gb|AY109760.1| Zea mays CL120_1 mRNA sequence Length = 1901 Score = 194 bits (98), Expect = 2e-46 Identities = 140/156 (89%) Strand = Plus / Plus Query: 281 cgagcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgt 340 |||||||||||| ||||||||| |||| |||||||||||||| ||| |||||||| Sbjct: 340 cgagcgctactcgctggacgaggtcgtctaccgctccagctcnnnnnncctcctcgacgt 399 Query: 341 gcgccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcga 400 |||||||||||| | ||| ||||| ||||||||||||||||||||||| ||||||||||| Sbjct: 400 gcgccacgacatggaggcgctggcccgctacccggggtcctactggcgtgacctcttcga 459 Query: 401 ctcccgcgtcggccgcaccgtctggccctacggctc 436 |||||||||||||||||||| ||||||||||||||| Sbjct: 460 ctcccgcgtcggccgcaccgcctggccctacggctc 495 Score = 54.0 bits (27), Expect = 4e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 162 aagcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccgggccccg 221 |||||||| ||| | ||||| ||| ||||||| |||||||||||||||| ||| | |||| Sbjct: 221 aagcaccgccgcccagcggaggagaacatccgcgaggaggcggcgcggctccgaggcccg 280 Query: 222 gcc 224 ||| Sbjct: 281 gcc 283
>ref|NM_192166.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1578 Score = 190 bits (96), Expect = 3e-45 Identities = 233/276 (84%), Gaps = 2/276 (0%) Strand = Plus / Plus Query: 164 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccg-ggccccgg 222 |||||| ||| | ||||| ||| |||||||||||||||| ||||||| ||| |||||||| Sbjct: 159 gcaccgccgccccgcggaggagaacatccgggaggaggccgcgcggctccgcggccccgg 218 Query: 223 ccaacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacg 282 ||||||||||| || ||||||| ||| ||||| ||| |||| | || | |||||| Sbjct: 219 g-aacgacttctcggcgtggtacgtgccgttccccccgacgcccgaggacgaccccgacg 277 Query: 283 agcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgc 342 |||||||||| ||||||||| | || |||||||||||||| || || || ||||||||| Sbjct: 278 agcgctactcgctggacgaggtggtctaccgctccagctccggggggctcctcgacgtgt 337 Query: 343 gccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgact 402 |||||||||| | ||| || ||||||| |||||| ||||||||||| ||||||||||||| Sbjct: 338 gccacgacatggaggcgctcgcgcgcttcccgggctcctactggcgcgacctcttcgact 397 Query: 403 cccgcgtcggccgcaccgtctggccctacggctccg 438 ||||||| || ||||||| |||||||||||||||| Sbjct: 398 cccgcgtggggcgcaccgcgtggccctacggctccg 433
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 190 bits (96), Expect = 3e-45 Identities = 233/276 (84%), Gaps = 2/276 (0%) Strand = Plus / Minus Query: 164 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccg-ggccccgg 222 |||||| ||| | ||||| ||| |||||||||||||||| ||||||| ||| |||||||| Sbjct: 28648976 gcaccgccgccccgcggaggagaacatccgggaggaggccgcgcggctccgcggccccgg 28648917 Query: 223 ccaacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacg 282 ||||||||||| || ||||||| ||| ||||| ||| |||| | || | |||||| Sbjct: 28648916 g-aacgacttctcggcgtggtacgtgccgttccccccgacgcccgaggacgaccccgacg 28648858 Query: 283 agcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgc 342 |||||||||| ||||||||| | || |||||||||||||| || || || ||||||||| Sbjct: 28648857 agcgctactcgctggacgaggtggtctaccgctccagctccggggggctcctcgacgtgt 28648798 Query: 343 gccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgact 402 |||||||||| | ||| || ||||||| |||||| ||||||||||| ||||||||||||| Sbjct: 28648797 gccacgacatggaggcgctcgcgcgcttcccgggctcctactggcgcgacctcttcgact 28648738 Query: 403 cccgcgtcggccgcaccgtctggccctacggctccg 438 ||||||| || ||||||| |||||||||||||||| Sbjct: 28648737 cccgcgtggggcgcaccgcgtggccctacggctccg 28648702
>dbj|AP003248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0431H09 Length = 166886 Score = 190 bits (96), Expect = 3e-45 Identities = 233/276 (84%), Gaps = 2/276 (0%) Strand = Plus / Minus Query: 164 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccg-ggccccgg 222 |||||| ||| | ||||| ||| |||||||||||||||| ||||||| ||| |||||||| Sbjct: 32050 gcaccgccgccccgcggaggagaacatccgggaggaggccgcgcggctccgcggccccgg 31991 Query: 223 ccaacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacg 282 ||||||||||| || ||||||| ||| ||||| ||| |||| | || | |||||| Sbjct: 31990 g-aacgacttctcggcgtggtacgtgccgttccccccgacgcccgaggacgaccccgacg 31932 Query: 283 agcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgc 342 |||||||||| ||||||||| | || |||||||||||||| || || || ||||||||| Sbjct: 31931 agcgctactcgctggacgaggtggtctaccgctccagctccggggggctcctcgacgtgt 31872 Query: 343 gccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgact 402 |||||||||| | ||| || ||||||| |||||| ||||||||||| ||||||||||||| Sbjct: 31871 gccacgacatggaggcgctcgcgcgcttcccgggctcctactggcgcgacctcttcgact 31812 Query: 403 cccgcgtcggccgcaccgtctggccctacggctccg 438 ||||||| || ||||||| |||||||||||||||| Sbjct: 31811 cccgcgtggggcgcaccgcgtggccctacggctccg 31776
>dbj|AK109336.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C12, full insert sequence Length = 1880 Score = 190 bits (96), Expect = 3e-45 Identities = 233/276 (84%), Gaps = 2/276 (0%) Strand = Plus / Plus Query: 164 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccg-ggccccgg 222 |||||| ||| | ||||| ||| |||||||||||||||| ||||||| ||| |||||||| Sbjct: 214 gcaccgccgccccgcggaggagaacatccgggaggaggccgcgcggctccgcggccccgg 273 Query: 223 ccaacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacg 282 ||||||||||| || ||||||| ||| ||||| ||| |||| | || | |||||| Sbjct: 274 g-aacgacttctcggcgtggtacgtgccgttccccccgacgcccgaggacgaccccgacg 332 Query: 283 agcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgc 342 |||||||||| ||||||||| | || |||||||||||||| || || || ||||||||| Sbjct: 333 agcgctactcgctggacgaggtggtctaccgctccagctccggggggctcctcgacgtgt 392 Query: 343 gccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgact 402 |||||||||| | ||| || ||||||| |||||| ||||||||||| ||||||||||||| Sbjct: 393 gccacgacatggaggcgctcgcgcgcttcccgggctcctactggcgcgacctcttcgact 452 Query: 403 cccgcgtcggccgcaccgtctggccctacggctccg 438 ||||||| || ||||||| |||||||||||||||| Sbjct: 453 cccgcgtggggcgcaccgcgtggccctacggctccg 488
>dbj|AK073138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024E01, full insert sequence Length = 1902 Score = 190 bits (96), Expect = 3e-45 Identities = 233/276 (84%), Gaps = 2/276 (0%) Strand = Plus / Plus Query: 164 gcaccggcgcgcggcggacgaggacatccgggaggaggcggcgcggcaccg-ggccccgg 222 |||||| ||| | ||||| ||| |||||||||||||||| ||||||| ||| |||||||| Sbjct: 231 gcaccgccgccccgcggaggagaacatccgggaggaggccgcgcggctccgcggccccgg 290 Query: 223 ccaacgacttctccgcctggtacgagcccttcccgccgggtcccgggtccgccgccgacg 282 ||||||||||| || ||||||| ||| ||||| ||| |||| | || | |||||| Sbjct: 291 g-aacgacttctcggcgtggtacgtgccgttccccccgacgcccgaggacgaccccgacg 349 Query: 283 agcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgtgc 342 |||||||||| ||||||||| | || |||||||||||||| || || || ||||||||| Sbjct: 350 agcgctactcgctggacgaggtggtctaccgctccagctccggggggctcctcgacgtgt 409 Query: 343 gccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcgact 402 |||||||||| | ||| || ||||||| |||||| ||||||||||| ||||||||||||| Sbjct: 410 gccacgacatggaggcgctcgcgcgcttcccgggctcctactggcgcgacctcttcgact 469 Query: 403 cccgcgtcggccgcaccgtctggccctacggctccg 438 ||||||| || ||||||| |||||||||||||||| Sbjct: 470 cccgcgtggggcgcaccgcgtggccctacggctccg 505
>gb|AY112514.1| Zea mays CL891_1 mRNA sequence Length = 1846 Score = 127 bits (64), Expect = 3e-26 Identities = 133/158 (84%) Strand = Plus / Plus Query: 281 cgagcgctactccctggacgagatcgtgtaccgctccagctcgggcggcctgctcgacgt 340 ||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| Sbjct: 303 cgagcgctactccctggacgagatcgtgtaccggtccagctcnnnnnncctcctcgacgt 362 Query: 341 gcgccacgacattgcggccctggcgcgctacccggggtcctactggcgggacctcttcga 400 ||| |||||||| | ||| ||| | |||| | |||| |||||||||| ||||||||||| Sbjct: 363 gcggcacgacatggaggcgctgtcccgcttctcgggcgcctactggcgcgacctcttcga 422 Query: 401 ctcccgcgtcggccgcaccgtctggccctacggctccg 438 ||||||| |||| |||||| |||||| ||||| |||| Sbjct: 423 ctcccgcatcgggcgcaccacctggccgtacgggtccg 460 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 155 caccaacaagcaccggcgcgcggcggacgaggacatccg 193 ||||| ||||||||||||||||||||| ||| ||||||| Sbjct: 177 caccaccaagcaccggcgcgcggcggatgagaacatccg 215
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 163 agcaccggcgcgcggcggacgaggacatc 191 ||||||||||||||| |||||||| |||| Sbjct: 3099165 agcaccggcgcgcggtggacgaggccatc 3099137 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 cgccgccagctccaccatgg 36 |||||||||||||||||||| Sbjct: 1713943 cgccgccagctccaccatgg 1713924 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 ggaggaggcggcgcggcaccgggc 217 ||||||||||||||||| |||||| Sbjct: 1183046 ggaggaggcggcgcggctccgggc 1183023 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ccagctccaccatggcggcc 41 |||||||||||||||||||| Sbjct: 285356 ccagctccaccatggcggcc 285375
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 ggcgcggcaccgggccccggc 223 ||||||||||||||||||||| Sbjct: 444267 ggcgcggcaccgggccccggc 444287
>ref|XM_468246.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1797 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 cggcgcgcggcggacgagga 187 |||||||||||||||||||| Sbjct: 72 cggcgcgcggcggacgagga 53
>ref|NM_002428.2| Homo sapiens matrix metallopeptidase 15 (membrane-inserted) (MMP15), mRNA Length = 4456 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ccgggaggaggcggcgcggc 210 |||||||||||||||||||| Sbjct: 1033 ccgggaggaggcggcgcggc 1052
>ref|XM_360580.1| Magnaporthe grisea 70-15 hypothetical protein (MG03123.4) partial mRNA Length = 2229 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ccgccgccagctccaccatg 35 |||||||||||||||||||| Sbjct: 991 ccgccgccagctccaccatg 972
>gb|BC055428.1| Homo sapiens matrix metallopeptidase 15 (membrane-inserted), mRNA (cDNA clone MGC:51077 IMAGE:4811572), complete cds Length = 4263 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ccgggaggaggcggcgcggc 210 |||||||||||||||||||| Sbjct: 846 ccgggaggaggcggcgcggc 865
>gb|BC036495.1| Homo sapiens matrix metallopeptidase 15 (membrane-inserted), mRNA (cDNA clone MGC:43196 IMAGE:5263145), complete cds Length = 4268 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ccgggaggaggcggcgcggc 210 |||||||||||||||||||| Sbjct: 851 ccgggaggaggcggcgcggc 870
>emb|Z48482.1|HSMMPM2 H.sapiens mRNA for membrane-type matrix metalloproteinase 2 Length = 3530 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ccgggaggaggcggcgcggc 210 |||||||||||||||||||| Sbjct: 108 ccgggaggaggcggcgcggc 127
>emb|CR749722.1| Homo sapiens mRNA; cDNA DKFZp434N071 (from clone DKFZp434N071) Length = 5009 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 ggaggaggcggcgcggcaccgggc 217 |||||||||||||||||| ||||| Sbjct: 619 ggaggaggcggcgcggcagcgggc 642
>gb|BC033015.2| Homo sapiens RAS p21 protein activator (GTPase activating protein) 1, transcript variant 1, mRNA (cDNA clone MGC:26760 IMAGE:4829173), complete cds Length = 4405 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 ggaggaggcggcgcggcaccgggc 217 |||||||||||||||||| ||||| Sbjct: 242 ggaggaggcggcgcggcagcgggc 265
>emb|AL583922.1|MLEPRTN6 Mycobacterium leprae strain TN complete genome; segment 6/10 Length = 318200 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 acgacttctccgcctggtac 245 |||||||||||||||||||| Sbjct: 196479 acgacttctccgcctggtac 196498
>emb|AL035472.1|MLCB596 Mycobacterium leprae cosmid B596 Length = 38426 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 acgacttctccgcctggtac 245 |||||||||||||||||||| Sbjct: 19297 acgacttctccgcctggtac 19278
>emb|AL929349.10| Zebrafish DNA sequence from clone CH211-207D24 in linkage group 20 Contains eight CpG islands, complete sequence Length = 196371 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 ccgccagctccaccatggcggcca 42 ||||||||||||||| |||||||| Sbjct: 92792 ccgccagctccaccaaggcggcca 92815
>emb|CR858268.1| Pongo pygmaeus mRNA; cDNA DKFZp469B2218 (from clone DKFZp469B2218) Length = 4648 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 ggaggaggcggcgcggcaccgggc 217 |||||||||||||||||| ||||| Sbjct: 501 ggaggaggcggcgcggcagcgggc 524
>gb|AC012182.7| Homo sapiens chromosome 16 clone RP11-332G1, complete sequence Length = 188926 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ccgggaggaggcggcgcggc 210 |||||||||||||||||||| Sbjct: 101619 ccgggaggaggcggcgcggc 101638
>gb|AC126776.2| Homo sapiens chromosome 5 clone RP11-752D4, complete sequence Length = 34335 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 ggaggaggcggcgcggcaccgggc 217 |||||||||||||||||| ||||| Sbjct: 15828 ggaggaggcggcgcggcagcgggc 15851
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 ccgccagctccaccatggcg 38 |||||||||||||||||||| Sbjct: 492165 ccgccagctccaccatggcg 492184
>gb|AF317732.1|AF317732 Chlamydomonas reinhardtii CIA5 gene, complete cds Length = 6481 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ccgggaggaggcggcgcggc 210 |||||||||||||||||||| Sbjct: 2383 ccgggaggaggcggcgcggc 2402
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cggcgcgcggcggacgagga 187 |||||||||||||||||||| Sbjct: 33801111 cggcgcgcggcggacgagga 33801130
>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0700F06 Length = 139277 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cggcgcgcggcggacgagga 187 |||||||||||||||||||| Sbjct: 131978 cggcgcgcggcggacgagga 131997
>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_H09 Length = 114721 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cggcgcgcggcggacgagga 187 |||||||||||||||||||| Sbjct: 17689 cggcgcgcggcggacgagga 17708
>dbj|AK119875.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-E10, full insert sequence Length = 3440 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 cagctcgggcggcctgctcgacgt 340 |||||||||||| ||||||||||| Sbjct: 571 cagctcgggcgggctgctcgacgt 548
>ref|NM_002890.1| Homo sapiens RAS p21 protein activator (GTPase activating protein) 1 (RASA1), transcript variant 1, mRNA Length = 4307 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 ggaggaggcggcgcggcaccgggc 217 |||||||||||||||||| ||||| Sbjct: 173 ggaggaggcggcgcggcagcgggc 196
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 tgcgccacgacattgcggcc 359 |||||||||||||||||||| Sbjct: 3376759 tgcgccacgacattgcggcc 3376740
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 ccgggaggaggcggcgcggcaccg 214 |||||||||||||||||| ||||| Sbjct: 2984048 ccgggaggaggcggcgcgccaccg 2984025
>dbj|AB209106.1| Homo sapiens mRNA for RAS p21 protein activator 1 isoform 1 variant protein Length = 3388 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 ggaggaggcggcgcggcaccgggc 217 |||||||||||||||||| ||||| Sbjct: 254 ggaggaggcggcgcggcagcgggc 277
>gb|M23379.1|HUMGAPA Human GTPase-activating protein ras p21 (RASA) mRNA, complete cds Length = 4307 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 ggaggaggcggcgcggcaccgggc 217 |||||||||||||||||| ||||| Sbjct: 173 ggaggaggcggcgcggcagcgggc 196
>dbj|AB052696.1| Chlamydomonas reinhardtii mRNA for CCM1-B, complete cds Length = 5125 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ccgggaggaggcggcgcggc 210 |||||||||||||||||||| Sbjct: 1833 ccgggaggaggcggcgcggc 1852
>dbj|AB052695.1| Chlamydomonas reinhardtii mRNA for CCM1-A, complete cds Length = 5128 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ccgggaggaggcggcgcggc 210 |||||||||||||||||||| Sbjct: 1836 ccgggaggaggcggcgcggc 1855
>dbj|AB052694.1| Chlamydomonas reinhardtii gene for CCM1-A, CCM1-B, complete cds Length = 8474 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ccgggaggaggcggcgcggc 210 |||||||||||||||||||| Sbjct: 2895 ccgggaggaggcggcgcggc 2914 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,969,118 Number of Sequences: 3902068 Number of extensions: 1969118 Number of successful extensions: 66244 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64940 Number of HSP's gapped (non-prelim): 1304 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
