ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bast04d09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Z49147.1|HVPAL7RM H.vulgare partial PAL mRNA for phenylalanine ammonia-lyase (1777 bp) Length = 1777 Score = 728 bits (367), Expect = 0.0 Identities = 379/383 (98%) Strand = Plus / Plus Query: 77 gcctactttcagaatccagacacatacaccagctagttcacctgtttagaactacttctc 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 60 gcctactttcagaatccagacacatacaccagctagttcacctgtttagaactacttctc 119 Query: 137 tgcatatctcgatggagtgcgagaacgcacacgttgccgccaacggcgatggcctgtgcg 196 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 120 tgcatatctcgatggagtgcgagaacgcacacgttgccgccaacggcgatggcttgtgcg 179 Query: 197 tggcacagccggcgcgggccgaccccctcaactggggcaaggcggcggaggagctgtccg 256 |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 180 tggcgcagccagcgcgggccgacccactcaactggggcaaggcggcggaggagctgtccg 239 Query: 257 ggagccatttggatgccgtgaagcggatggtggaggagtaccgtaagccggtggtgacca 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 ggagccatttggatgccgtgaagcggatggtggaggagtaccgtaagccggtggtgacca 299 Query: 317 tggagggcgccagcctgaccatcgccatggtcgccgcggtggctgccggcaacgacacca 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 tggagggcgccagcctgaccatcgccatggtcgccgcggtggctgccggcaacgacacca 359 Query: 377 gggtggagctcgatgagtccgcccgcggccgcgtcaaggagagcagcgactgggtcatga 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 360 gggtggagctcgatgagtccgcccgcggccgcgtcaaggagagcagcgactgggtcatga 419 Query: 437 acagcatgatgaacggcaccgac 459 ||||||||||||||||||||||| Sbjct: 420 acagcatgatgaacggcaccgac 442 Score = 93.7 bits (47), Expect = 5e-16 Identities = 47/47 (100%) Strand = Plus / Plus Query: 14 cacaagtctttcttcaagacacagatcaatccagatacacatacacc 60 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12 cacaagtctttcttcaagacacagatcaatccagatacacatacacc 58
>emb|X99705.1|TAPALGEN1 T.aestivum PAL gene Length = 3444 Score = 420 bits (212), Expect = e-114 Identities = 299/325 (92%), Gaps = 6/325 (1%) Strand = Plus / Plus Query: 136 ctgcatatctcgatggagtgcgagaacgcacacgttgccgccaacggcgatggcctgtgc 195 |||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 839 ctgcatatttcgatggagtgcgagaacgcacacgttgcg--caacggcgatggcttgtgc 896 Query: 196 gtggcacagccgg-cgcgggccgaccccctcaactggggcaaggcggcggaggagctgtc 254 ||||| ||||||| ||||||||||||| ||||||||||| ||||||||||||||||| || Sbjct: 897 gtggcgcagccggtcgcgggccgacccactcaactgggggaaggcggcggaggagctctc 956 Query: 255 cgggagccatttggatgccgtgaagcggatggtggaggagtaccgtaagccggtggtgac 314 || ||||||||||| || |||||||||||||||||||||||||| |||||||| ||||| Sbjct: 957 gggtagccatttggaggcggtgaagcggatggtggaggagtaccgcaagccggtcgtgac 1016 Query: 315 catggagggcgccagcctgaccatcgccatggtcgccgcggtggctgccggcaacgacac 374 ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 1017 gatggagggcgccac---gaccatcgcgatggtcgccgcggtggctgccggcagcgacac 1073 Query: 375 cagggtggagctcgatgagtccgcccgcggccgcgtcaaggagagcagcgactgggtcat 434 ||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1074 cagagtggagctggacgagtccgcccgcggccgcgtcaaggagagcagcgactgggtcat 1133 Query: 435 gaacagcatgatgaacggcaccgac 459 ||||||||||||||||||||||||| Sbjct: 1134 gaacagcatgatgaacggcaccgac 1158 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 21 ctttcttcaagacacagatcaatccagatacacatacacc 60 ||||||||| |||||||||||||||||||||||||||||| Sbjct: 723 ctttcttcaggacacagatcaatccagatacacatacacc 762 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 41 aatccagatacacatacacctgccgacgtc 70 |||||||||||||| |||||||||| |||| Sbjct: 804 aatccagatacacacacacctgccggcgtc 833
>ref|XM_473196.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2145 Score = 291 bits (147), Expect = 1e-75 Identities = 225/251 (89%) Strand = Plus / Plus Query: 209 cgcgggccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttgg 268 |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 65 cgcgtgccgacccgctcaactgggggaaggcggcggaggagctgtccgggagccatctgg 124 Query: 269 atgccgtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgcca 328 | || |||||||| ||||||||||||||||| | ||| |||||||| || |||||||||| Sbjct: 125 acgcggtgaagcgcatggtggaggagtaccgcaggcccgtggtgacgatcgagggcgcca 184 Query: 329 gcctgaccatcgccatggtcgccgcggtggctgccggcaacgacaccagggtggagctcg 388 ||||||||||||| |||||| |||||||| ||| | || | ||||||||||||||| Sbjct: 185 gcctgaccatcgcgcaggtcgcggcggtggcctccgccggcgccgccagggtggagctcg 244 Query: 389 atgagtccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacagcatgatga 448 | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 245 acgagtccgcccgcggccgcgtcaaggccagcagcgactgggtcatgaacagcatgatga 304 Query: 449 acggcaccgac 459 ||||||||||| Sbjct: 305 acggcaccgac 315
>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02, complete sequence Length = 139080 Score = 291 bits (147), Expect = 1e-75 Identities = 225/251 (89%) Strand = Plus / Minus Query: 209 cgcgggccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttgg 268 |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 120383 cgcgtgccgacccgctcaactgggggaaggcggcggaggagctgtccgggagccatctgg 120324 Query: 269 atgccgtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgcca 328 | || |||||||| ||||||||||||||||| | ||| |||||||| || |||||||||| Sbjct: 120323 acgcggtgaagcgcatggtggaggagtaccgcaggcccgtggtgacgatcgagggcgcca 120264 Query: 329 gcctgaccatcgccatggtcgccgcggtggctgccggcaacgacaccagggtggagctcg 388 ||||||||||||| |||||| |||||||| ||| | || | ||||||||||||||| Sbjct: 120263 gcctgaccatcgcgcaggtcgcggcggtggcctccgccggcgccgccagggtggagctcg 120204 Query: 389 atgagtccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacagcatgatga 448 | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 120203 acgagtccgcccgcggccgcgtcaaggccagcagcgactgggtcatgaacagcatgatga 120144 Query: 449 acggcaccgac 459 ||||||||||| Sbjct: 120143 acggcaccgac 120133
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 291 bits (147), Expect = 1e-75 Identities = 225/251 (89%) Strand = Plus / Minus Query: 209 cgcgggccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttgg 268 |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 25902973 cgcgtgccgacccgctcaactgggggaaggcggcggaggagctgtccgggagccatctgg 25902914 Query: 269 atgccgtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgcca 328 | || |||||||| ||||||||||||||||| | ||| |||||||| || |||||||||| Sbjct: 25902913 acgcggtgaagcgcatggtggaggagtaccgcaggcccgtggtgacgatcgagggcgcca 25902854 Query: 329 gcctgaccatcgccatggtcgccgcggtggctgccggcaacgacaccagggtggagctcg 388 ||||||||||||| |||||| |||||||| ||| | || | ||||||||||||||| Sbjct: 25902853 gcctgaccatcgcgcaggtcgcggcggtggcctccgccggcgccgccagggtggagctcg 25902794 Query: 389 atgagtccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacagcatgatga 448 | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 25902793 acgagtccgcccgcggccgcgtcaaggccagcagcgactgggtcatgaacagcatgatga 25902734 Query: 449 acggcaccgac 459 ||||||||||| Sbjct: 25902733 acggcaccgac 25902723 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 cgccatggtcgccgcggtggc 359 ||||||||||||||||||||| Sbjct: 23156454 cgccatggtcgccgcggtggc 23156434
>dbj|AK067801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118I15, full insert sequence Length = 2551 Score = 291 bits (147), Expect = 1e-75 Identities = 225/251 (89%) Strand = Plus / Plus Query: 209 cgcgggccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttgg 268 |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 190 cgcgtgccgacccgctcaactgggggaaggcggcggaggagctgtccgggagccatctgg 249 Query: 269 atgccgtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgcca 328 | || |||||||| ||||||||||||||||| | ||| |||||||| || |||||||||| Sbjct: 250 acgcggtgaagcgcatggtggaggagtaccgcaggcccgtggtgacgatcgagggcgcca 309 Query: 329 gcctgaccatcgccatggtcgccgcggtggctgccggcaacgacaccagggtggagctcg 388 ||||||||||||| |||||| |||||||| ||| | || | ||||||||||||||| Sbjct: 310 gcctgaccatcgcgcaggtcgcggcggtggcctccgccggcgccgccagggtggagctcg 369 Query: 389 atgagtccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacagcatgatga 448 | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 370 acgagtccgcccgcggccgcgtcaaggccagcagcgactgggtcatgaacagcatgatga 429 Query: 449 acggcaccgac 459 ||||||||||| Sbjct: 430 acggcaccgac 440
>emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence Length = 139226 Score = 291 bits (147), Expect = 1e-75 Identities = 225/251 (89%) Strand = Plus / Minus Query: 209 cgcgggccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttgg 268 |||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct: 29235 cgcgtgccgacccgctcaactgggggaaggcggcggaggagctgtccgggagccatctgg 29176 Query: 269 atgccgtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgcca 328 | || |||||||| ||||||||||||||||| | ||| |||||||| || |||||||||| Sbjct: 29175 acgcggtgaagcgcatggtggaggagtaccgcaggcccgtggtgacgatcgagggcgcca 29116 Query: 329 gcctgaccatcgccatggtcgccgcggtggctgccggcaacgacaccagggtggagctcg 388 ||||||||||||| |||||| |||||||| ||| | || | ||||||||||||||| Sbjct: 29115 gcctgaccatcgcgcaggtcgcggcggtggcctccgccggcgccgccagggtggagctcg 29056 Query: 389 atgagtccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacagcatgatga 448 | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 29055 acgagtccgcccgcggccgcgtcaaggccagcagcgactgggtcatgaacagcatgatga 28996 Query: 449 acggcaccgac 459 ||||||||||| Sbjct: 28995 acggcaccgac 28985
>ref|XM_466845.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2369 Score = 216 bits (109), Expect = 5e-53 Identities = 222/259 (85%), Gaps = 3/259 (1%) Strand = Plus / Plus Query: 204 gccggcgcgggccgaccccctcaactggggcaaggcggcggaggagctgtccgggagcca 263 |||| ||||||||||||| || |||||||| ||||||||||| |||||| | |||||||| Sbjct: 218 gccgccgcgggccgacccactgaactgggggaaggcggcggacgagctggcggggagcca 277 Query: 264 tttggatgccgtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggaggg 323 | || | |||||||||||||||||||| | ||| ||||| |||||| || ||||| Sbjct: 278 cctcgacgaggtgaagcggatggtggaggacttccgccagccgctggtgaagatcgaggg 337 Query: 324 cgccagcctgaccatcgccatggtcgccgcggtggctgccggcaacg---acaccagggt 380 |||||||||||| ||||| ||| ||||| ||||| |||||| || || ||||||| Sbjct: 338 cgccagcctgacgatcgcgcaggtggccgccgtggccgccggcgccggcgacgccagggt 397 Query: 381 ggagctcgatgagtccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacag 440 ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 398 ggagctcgacgagtccgcccgcggccgcgtcaaggccagcagcgactgggtcatgaacag 457 Query: 441 catgatgaacggcaccgac 459 ||||||||||||||||||| Sbjct: 458 catgatgaacggcaccgac 476
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 216 bits (109), Expect = 5e-53 Identities = 222/259 (85%), Gaps = 3/259 (1%) Strand = Plus / Minus Query: 204 gccggcgcgggccgaccccctcaactggggcaaggcggcggaggagctgtccgggagcca 263 |||| ||||||||||||| || |||||||| ||||||||||| |||||| | |||||||| Sbjct: 25007665 gccgccgcgggccgacccactgaactgggggaaggcggcggacgagctggcggggagcca 25007606 Query: 264 tttggatgccgtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggaggg 323 | || | |||||||||||||||||||| | ||| ||||| |||||| || ||||| Sbjct: 25007605 cctcgacgaggtgaagcggatggtggaggacttccgccagccgctggtgaagatcgaggg 25007546 Query: 324 cgccagcctgaccatcgccatggtcgccgcggtggctgccggcaacg---acaccagggt 380 |||||||||||| ||||| ||| ||||| ||||| |||||| || || ||||||| Sbjct: 25007545 cgccagcctgacgatcgcgcaggtggccgccgtggccgccggcgccggcgacgccagggt 25007486 Query: 381 ggagctcgatgagtccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacag 440 ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 25007485 ggagctcgacgagtccgcccgcggccgcgtcaaggccagcagcgactgggtcatgaacag 25007426 Query: 441 catgatgaacggcaccgac 459 ||||||||||||||||||| Sbjct: 25007425 catgatgaacggcaccgac 25007407 Score = 155 bits (78), Expect = 2e-34 Identities = 201/242 (83%) Strand = Plus / Minus Query: 214 gccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttggatgcc 273 |||||||| || |||||||| ||||||||||||||| |||| |||||||| | || | Sbjct: 25013698 gccgacccgctgaactgggggaaggcggcggaggagatgtcggggagccacctcgacgag 25013639 Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgccagcctg 333 |||||||| ||||||| |||||||| ||||| |||| | || ||||||||||||||| Sbjct: 25013638 gtgaagcgcatggtggccgagtaccgccagccgctggtaaagatcgagggcgccagcctg 25013579 Query: 334 accatcgccatggtcgccgcggtggctgccggcaacgacaccagggtggagctcgatgag 393 | ||||| ||||||||||||||| || | | ||| ||||||| |||||||| ||| Sbjct: 25013578 aggatcgcgcaggtcgccgcggtggccgcggccggcgaggccagggtcgagctcgacgag 25013519 Query: 394 tccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacagcatgatgaacggc 453 || ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct: 25013518 tcggcccgcgagcgcgtcaaggccagcagcgactgggtgatgaacagcatgatgaacggc 25013459 Query: 454 ac 455 || Sbjct: 25013458 ac 25013457 Score = 131 bits (66), Expect = 2e-27 Identities = 198/242 (81%) Strand = Plus / Minus Query: 214 gccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttggatgcc 273 |||||||| || |||||||| ||||| |||||||| || | |||||||| | || | Sbjct: 25027412 gccgacccgctgaactgggggaaggccacggaggagatgacggggagccacctcgacgag 25027353 Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgccagcctg 333 |||||| ||||||||| ||||||||| |||| |||| | || |||||||| |||||| Sbjct: 25027352 gtgaagaggatggtggcggagtaccgccagcctctggtcaagatcgagggcgctagcctg 25027293 Query: 334 accatcgccatggtcgccgcggtggctgccggcaacgacaccagggtggagctcgatgag 393 | ||||| ||||||||||||||| || | | ||| |||||||||||||||| ||| Sbjct: 25027292 aggatcgcgcaggtcgccgcggtggccgcggccggcgaggccagggtggagctcgacgag 25027233 Query: 394 tccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacagcatgatgaacggc 453 || ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct: 25027232 tcggcccgcgagcgcgtcaaggccagcagcgactgggtgatgaacagcatgatgaacggc 25027173 Query: 454 ac 455 || Sbjct: 25027172 ac 25027171
>dbj|AP005000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0042D01 Length = 148305 Score = 216 bits (109), Expect = 5e-53 Identities = 222/259 (85%), Gaps = 3/259 (1%) Strand = Plus / Minus Query: 204 gccggcgcgggccgaccccctcaactggggcaaggcggcggaggagctgtccgggagcca 263 |||| ||||||||||||| || |||||||| ||||||||||| |||||| | |||||||| Sbjct: 20653 gccgccgcgggccgacccactgaactgggggaaggcggcggacgagctggcggggagcca 20594 Query: 264 tttggatgccgtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggaggg 323 | || | |||||||||||||||||||| | ||| ||||| |||||| || ||||| Sbjct: 20593 cctcgacgaggtgaagcggatggtggaggacttccgccagccgctggtgaagatcgaggg 20534 Query: 324 cgccagcctgaccatcgccatggtcgccgcggtggctgccggcaacg---acaccagggt 380 |||||||||||| ||||| ||| ||||| ||||| |||||| || || ||||||| Sbjct: 20533 cgccagcctgacgatcgcgcaggtggccgccgtggccgccggcgccggcgacgccagggt 20474 Query: 381 ggagctcgatgagtccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacag 440 ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 20473 ggagctcgacgagtccgcccgcggccgcgtcaaggccagcagcgactgggtcatgaacag 20414 Query: 441 catgatgaacggcaccgac 459 ||||||||||||||||||| Sbjct: 20413 catgatgaacggcaccgac 20395 Score = 155 bits (78), Expect = 2e-34 Identities = 201/242 (83%) Strand = Plus / Minus Query: 214 gccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttggatgcc 273 |||||||| || |||||||| ||||||||||||||| |||| |||||||| | || | Sbjct: 26686 gccgacccgctgaactgggggaaggcggcggaggagatgtcggggagccacctcgacgag 26627 Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgccagcctg 333 |||||||| ||||||| |||||||| ||||| |||| | || ||||||||||||||| Sbjct: 26626 gtgaagcgcatggtggccgagtaccgccagccgctggtaaagatcgagggcgccagcctg 26567 Query: 334 accatcgccatggtcgccgcggtggctgccggcaacgacaccagggtggagctcgatgag 393 | ||||| ||||||||||||||| || | | ||| ||||||| |||||||| ||| Sbjct: 26566 aggatcgcgcaggtcgccgcggtggccgcggccggcgaggccagggtcgagctcgacgag 26507 Query: 394 tccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacagcatgatgaacggc 453 || ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct: 26506 tcggcccgcgagcgcgtcaaggccagcagcgactgggtgatgaacagcatgatgaacggc 26447 Query: 454 ac 455 || Sbjct: 26446 ac 26445 Score = 131 bits (66), Expect = 2e-27 Identities = 198/242 (81%) Strand = Plus / Minus Query: 214 gccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttggatgcc 273 |||||||| || |||||||| ||||| |||||||| || | |||||||| | || | Sbjct: 40400 gccgacccgctgaactgggggaaggccacggaggagatgacggggagccacctcgacgag 40341 Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgccagcctg 333 |||||| ||||||||| ||||||||| |||| |||| | || |||||||| |||||| Sbjct: 40340 gtgaagaggatggtggcggagtaccgccagcctctggtcaagatcgagggcgctagcctg 40281 Query: 334 accatcgccatggtcgccgcggtggctgccggcaacgacaccagggtggagctcgatgag 393 | ||||| ||||||||||||||| || | | ||| |||||||||||||||| ||| Sbjct: 40280 aggatcgcgcaggtcgccgcggtggccgcggccggcgaggccagggtggagctcgacgag 40221 Query: 394 tccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacagcatgatgaacggc 453 || ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct: 40220 tcggcccgcgagcgcgtcaaggccagcagcgactgggtgatgaacagcatgatgaacggc 40161 Query: 454 ac 455 || Sbjct: 40160 ac 40159
>dbj|AK120127.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026F02, full insert sequence Length = 2594 Score = 216 bits (109), Expect = 5e-53 Identities = 222/259 (85%), Gaps = 3/259 (1%) Strand = Plus / Plus Query: 204 gccggcgcgggccgaccccctcaactggggcaaggcggcggaggagctgtccgggagcca 263 |||| ||||||||||||| || |||||||| ||||||||||| |||||| | |||||||| Sbjct: 218 gccgccgcgggccgacccactgaactgggggaaggcggcggacgagctggcggggagcca 277 Query: 264 tttggatgccgtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggaggg 323 | || | |||||||||||||||||||| | ||| ||||| |||||| || ||||| Sbjct: 278 cctcgacgaggtgaagcggatggtggaggacttccgccagccgctggtgaagatcgaggg 337 Query: 324 cgccagcctgaccatcgccatggtcgccgcggtggctgccggcaacg---acaccagggt 380 |||||||||||| ||||| ||| ||||| ||||| |||||| || || ||||||| Sbjct: 338 cgccagcctgacgatcgcgcaggtggccgccgtggccgccggcgccggcgacgccagggt 397 Query: 381 ggagctcgatgagtccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacag 440 ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 398 ggagctcgacgagtccgcccgcggccgcgtcaaggccagcagcgactgggtcatgaacag 457 Query: 441 catgatgaacggcaccgac 459 ||||||||||||||||||| Sbjct: 458 catgatgaacggcaccgac 476
>gb|AY450643.1| Bambusa oldhamii phenylalanine ammonia-lyase (PAL1) mRNA, complete cds Length = 2139 Score = 186 bits (94), Expect = 4e-44 Identities = 208/246 (84%) Strand = Plus / Plus Query: 214 gccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttggatgcc 273 |||||||| || |||||||| |||||||||||||||||| |||||||||||||| | Sbjct: 64 gccgacccgcttaactgggggaaggcggcggaggagctgatggggagccatttggacgag 123 Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgccagcctg 333 |||||||||||||||| ||||||||| |||||||||||| || ||||||||||||||| Sbjct: 124 gtgaagcggatggtggcggagtaccgccagccggtggtgaagatcgagggcgccagcctg 183 Query: 334 accatcgccatggtcgccgcggtggctgccggcaacgacaccagggtggagctcgatgag 393 | ||||| |||||| || ||||| | | | |||| ||| |||||||||||| ||| Sbjct: 184 aggatcgctcaggtcgcggcagtggccgtggccggcgacgccaaggtggagctcgacgag 243 Query: 394 tccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacagcatgatgaacggc 453 || || || | |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 244 tcggctcgtgaacgcgtcaaggccagcagcgactgggtcatgaacagcatgatgaacggc 303 Query: 454 accgac 459 |||||| Sbjct: 304 accgac 309
>emb|Z15085.1|OSGP28G O.sativa GP28 gene (partial) Length = 4843 Score = 172 bits (87), Expect = 6e-40 Identities = 206/245 (84%), Gaps = 3/245 (1%) Strand = Plus / Plus Query: 204 gccggcgcgggccgaccccctcaactggggcaaggcggcggaggagctgtccgggagcca 263 |||| ||||||||||||| || |||||||| ||||||||||| |||||| | |||||||| Sbjct: 1162 gccgccgcgggccgacccactgaactgggggaaggcggcggacgagctggcggggagcca 1221 Query: 264 tttggatgccgtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggaggg 323 | || | |||||||||||||||||||| | ||| ||| |||||| || ||||| Sbjct: 1222 cctcgacgaggtgaagcggatggtggaggacttccgccagcgcctggtgaagatcgaggg 1281 Query: 324 cgccagcctgaccatcgccatggtcgccgcggtggctgccggcaacg---acaccagggt 380 |||||||||||| ||||| ||| ||||| ||||| |||||| || || ||||||| Sbjct: 1282 cgccagcctgacgatcgcgcaggtggccgccgtggccgccggcgccggcgacgccagggt 1341 Query: 381 ggagctcgatgagtccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacag 440 ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1342 ggagctcgacgagtccgcccgcggccgcgtcaaggccagcagcgactgggtcatgaacag 1401 Query: 441 catga 445 ||||| Sbjct: 1402 catga 1406
>ref|XM_466846.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2142 Score = 155 bits (78), Expect = 2e-34 Identities = 201/242 (83%) Strand = Plus / Plus Query: 214 gccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttggatgcc 273 |||||||| || |||||||| ||||||||||||||| |||| |||||||| | || | Sbjct: 67 gccgacccgctgaactgggggaaggcggcggaggagatgtcggggagccacctcgacgag 126 Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgccagcctg 333 |||||||| ||||||| |||||||| ||||| |||| | || ||||||||||||||| Sbjct: 127 gtgaagcgcatggtggccgagtaccgccagccgctggtaaagatcgagggcgccagcctg 186 Query: 334 accatcgccatggtcgccgcggtggctgccggcaacgacaccagggtggagctcgatgag 393 | ||||| ||||||||||||||| || | | ||| ||||||| |||||||| ||| Sbjct: 187 aggatcgcgcaggtcgccgcggtggccgcggccggcgaggccagggtcgagctcgacgag 246 Query: 394 tccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacagcatgatgaacggc 453 || ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct: 247 tcggcccgcgagcgcgtcaaggccagcagcgactgggtgatgaacagcatgatgaacggc 306 Query: 454 ac 455 || Sbjct: 307 ac 308
>ref|XM_466849.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2407 Score = 131 bits (66), Expect = 2e-27 Identities = 198/242 (81%) Strand = Plus / Plus Query: 214 gccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttggatgcc 273 |||||||| || |||||||| ||||| |||||||| || | |||||||| | || | Sbjct: 102 gccgacccgctgaactgggggaaggccacggaggagatgacggggagccacctcgacgag 161 Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgccagcctg 333 |||||| ||||||||| ||||||||| |||| |||| | || |||||||| |||||| Sbjct: 162 gtgaagaggatggtggcggagtaccgccagcctctggtcaagatcgagggcgctagcctg 221 Query: 334 accatcgccatggtcgccgcggtggctgccggcaacgacaccagggtggagctcgatgag 393 | ||||| ||||||||||||||| || | | ||| |||||||||||||||| ||| Sbjct: 222 aggatcgcgcaggtcgccgcggtggccgcggccggcgaggccagggtggagctcgacgag 281 Query: 394 tccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacagcatgatgaacggc 453 || ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct: 282 tcggcccgcgagcgcgtcaaggccagcagcgactgggtgatgaacagcatgatgaacggc 341 Query: 454 ac 455 || Sbjct: 342 ac 343
>dbj|AK068993.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001A06, full insert sequence Length = 2406 Score = 131 bits (66), Expect = 2e-27 Identities = 198/242 (81%) Strand = Plus / Plus Query: 214 gccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttggatgcc 273 |||||||| || |||||||| ||||| |||||||| || | |||||||| | || | Sbjct: 101 gccgacccgctgaactgggggaaggccacggaggagatgacggggagccacctcgacgag 160 Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgccagcctg 333 |||||| ||||||||| ||||||||| |||| |||| | || |||||||| |||||| Sbjct: 161 gtgaagaggatggtggcggagtaccgccagcctctggtcaagatcgagggcgctagcctg 220 Query: 334 accatcgccatggtcgccgcggtggctgccggcaacgacaccagggtggagctcgatgag 393 | ||||| ||||||||||||||| || | | ||| |||||||||||||||| ||| Sbjct: 221 aggatcgcgcaggtcgccgcggtggccgcggccggcgaggccagggtggagctcgacgag 280 Query: 394 tccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaacagcatgatgaacggc 453 || ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct: 281 tcggcccgcgagcgcgtcaaggccagcagcgactgggtgatgaacagcatgatgaacggc 340 Query: 454 ac 455 || Sbjct: 341 ac 342
>emb|X87946.1|OSDNAZB8 O.sativa ZB8 gene Length = 4660 Score = 113 bits (57), Expect = 5e-22 Identities = 117/137 (85%) Strand = Plus / Plus Query: 319 gagggcgccagcctgaccatcgccatggtcgccgcggtggctgccggcaacgacaccagg 378 |||||||| ||||||| ||||| ||||||||||||||| || | | ||| ||||| Sbjct: 2495 gagggcgctagcctgaggatcgcgcaggtcgccgcggtggccgcagccggcgaggccagg 2554 Query: 379 gtggagctcgatgagtccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaac 438 ||||||||||| ||||| ||||||| |||||||||| |||||||||||||| |||||| Sbjct: 2555 gtggagctcgacgagtcggcccgcgagcgcgtcaaggccagcagcgactgggtgatgaac 2614 Query: 439 agcatgatgaacggcac 455 ||||||||||||||||| Sbjct: 2615 agcatgatgaacggcac 2631
>ref|XM_475254.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2151 Score = 89.7 bits (45), Expect = 7e-15 Identities = 102/121 (84%) Strand = Plus / Plus Query: 214 gccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttggatgcc 273 |||||||| ||||||||||| ||||||||||||||| || |||||||||| | || | Sbjct: 67 gccgacccgctcaactgggggaaggcggcggaggagatggccgggagccacctcgacgag 126 Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgccagcctg 333 |||||| ||||||||| ||||||||| |||| |||||| || ||||||||||||||| Sbjct: 127 gtgaagaggatggtggcggagtaccggcagcccgtggtgcggatcgagggcgccagcctg 186 Query: 334 a 334 | Sbjct: 187 a 187 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 406 cgcgtcaaggagagcagcgactgggtcatgaacagcatgatgaacggcaccgac 459 |||||||||| |||||||||||||| |||||||||||| ||||||||||||| Sbjct: 268 cgcgtcaaggccagcagcgactgggtgatgaacagcatggcgaacggcaccgac 321
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 89.7 bits (45), Expect = 7e-15 Identities = 102/121 (84%) Strand = Plus / Minus Query: 214 gccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttggatgcc 273 |||||||| ||||||||||| ||||||||||||||| || |||||||||| | || | Sbjct: 124705 gccgacccgctcaactgggggaaggcggcggaggagatggccgggagccacctcgacgag 124646 Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgccagcctg 333 |||||| ||||||||| ||||||||| |||| |||||| || ||||||||||||||| Sbjct: 124645 gtgaagaggatggtggcggagtaccggcagcccgtggtgcggatcgagggcgccagcctg 124586 Query: 334 a 334 | Sbjct: 124585 a 124585 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 406 cgcgtcaaggagagcagcgactgggtcatgaacagcatgatgaacggcaccgac 459 |||||||||| |||||||||||||| |||||||||||| ||||||||||||| Sbjct: 124504 cgcgtcaaggccagcagcgactgggtgatgaacagcatggcgaacggcaccgac 124451
>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09, complete sequence Length = 177374 Score = 89.7 bits (45), Expect = 7e-15 Identities = 102/121 (84%) Strand = Plus / Minus Query: 214 gccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttggatgcc 273 |||||||| ||||||||||| ||||||||||||||| || |||||||||| | || | Sbjct: 67286 gccgacccgctcaactgggggaaggcggcggaggagatggccgggagccacctcgacgag 67227 Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgccagcctg 333 |||||| ||||||||| ||||||||| |||| |||||| || ||||||||||||||| Sbjct: 67226 gtgaagaggatggtggcggagtaccggcagcccgtggtgcggatcgagggcgccagcctg 67167 Query: 334 a 334 | Sbjct: 67166 a 67166 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 406 cgcgtcaaggagagcagcgactgggtcatgaacagcatgatgaacggcaccgac 459 |||||||||| |||||||||||||| |||||||||||| ||||||||||||| Sbjct: 67085 cgcgtcaaggccagcagcgactgggtgatgaacagcatggcgaacggcaccgac 67032
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 89.7 bits (45), Expect = 7e-15 Identities = 102/121 (84%) Strand = Plus / Minus Query: 214 gccgaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttggatgcc 273 |||||||| ||||||||||| ||||||||||||||| || |||||||||| | || | Sbjct: 20811481 gccgacccgctcaactgggggaaggcggcggaggagatggccgggagccacctcgacgag 20811422 Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggtgaccatggagggcgccagcctg 333 |||||| ||||||||| ||||||||| |||| |||||| || ||||||||||||||| Sbjct: 20811421 gtgaagaggatggtggcggagtaccggcagcccgtggtgcggatcgagggcgccagcctg 20811362 Query: 334 a 334 | Sbjct: 20811361 a 20811361 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 406 cgcgtcaaggagagcagcgactgggtcatgaacagcatgatgaacggcaccgac 459 |||||||||| |||||||||||||| |||||||||||| ||||||||||||| Sbjct: 20811280 cgcgtcaaggccagcagcgactgggtgatgaacagcatggcgaacggcaccgac 20811227 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 gaccatcgccatggtcgccgcggt 356 ||||||||||||| |||||||||| Sbjct: 19955661 gaccatcgccatgctcgccgcggt 19955684 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 accatcgccatggtcgccgc 353 |||||||||||||||||||| Sbjct: 4914042 accatcgccatggtcgccgc 4914023
>gb|AY986506.1| Astragalus membranaceus var. mongholicus phenylalanine ammonia-lyase (PAL1) mRNA, complete cds Length = 2562 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 256 gggagccatttggatgccgtgaagcggatggtggaggagtaccgtaagccggtggt 311 ||||| |||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct: 255 gggagtcatttggatgaggtgaagcggatggtggaggagtaccggaatccggtggt 310
>emb|AJ002221.1|DLJ002221 Digitalis lanata mRNA for phenylalanine ammonia lyase Length = 2403 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 237 ggcggcggaggagctgtccgggagccatttggatgccgtgaagcggatggtggaggagt 295 |||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| Sbjct: 204 ggcggcggaggagctgaaggggagccatctggatgaggtgaagcggatggtggaggagt 262
>dbj|AB089813.1| Daucus carota gDcPAL3 gene for phenylalanine ammonia-lyase, complete cds Length = 7276 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 237 ggcggcggaggagctgtccgggagccatttggatgccgtgaagcggatggtggaggagta 296 ||||||||||| |||| |||||||||||||| | |||||| ||||||||| |||||| Sbjct: 2789 ggcggcggaggcgctgaaggggagccatttggaggaggtgaagaggatggtggcggagta 2848 Query: 297 ccgtaagccggtggtga 313 | | ||||||||||||| Sbjct: 2849 caggaagccggtggtga 2865
>dbj|AB015871.1| Vitis vinifera gene for phenylalanine ammonia-lyase, complete cds Length = 4359 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 259 agccatttggatgccgtgaagcggatggtggaggagtaccgtaagccggtggt 311 ||||||||||||| |||||||| ||||||| ||||||||| ||||||||||| Sbjct: 1843 agccatttggatgaagtgaagcgcatggtggcggagtaccggaagccggtggt 1895
>dbj|AB015870.1| Vitis vinifera gene for phenylalanine ammonia-lyase, partial cds Length = 1938 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 259 agccatttggatgccgtgaagcggatggtggaggagtaccgtaagccggt 308 ||||||||||||| |||||||| ||||||| ||||||||| |||||||| Sbjct: 373 agccatttggatgaagtgaagcgcatggtggcggagtaccggaagccggt 422
>gb|AC150977.12| Medicago truncatula clone mth2-32m9, complete sequence Length = 125772 Score = 58.0 bits (29), Expect = 3e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 223 ctcaactggggcaaggcggcggaggagctgtccgggagccatttggatgccgtgaagcgg 282 |||||||||||| |||||||||| || | ||||| |||||||||| |||||||| Sbjct: 28429 ctcaactggggcgcggcggcggagtcattgacagggagtcatttggatgaggtgaagcgt 28370 Query: 283 atggtggaggagtaccgtaagccggtggt 311 |||||||||||||| ||||| ||| |||| Sbjct: 28369 atggtggaggagtatcgtaacccgttggt 28341
>emb|AJ278454.1|JNI278454 Juglans nigra mRNA for partial phenylalanine ammonia-lyase (PAL gene) Length = 856 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 407 gcgtcaaggagagcagcgactgggtcatgaacagcatgatgaacggcaccgac 459 ||||||||| |||||||||||||||||||||||| | | |||||||||||| Sbjct: 142 gcgtcaaggccagcagcgactgggtcatgaacagcgtcaacaacggcaccgac 194 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 280 cggatggtggaggagtaccgtaagccggtggt 311 |||||||||||||||||||| ||||||||||| Sbjct: 13 cggatggtggaggagtaccggaagccggtggt 44
>gb|AY973992.1| Bambusa ventricosa putative phenylalanine ammonia-lyase mRNA, complete cds Length = 2353 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 217 gaccccctcaactggggcaaggcggcggaggagctgtccgggagccatttggatgccgtg 276 ||||| |||||||||||| |||||||| ||||||| |||||||||| |||| | ||| Sbjct: 31 gacccgctcaactggggcgcggcggcggcggagctggccgggagccacctggacgaggtg 90 Query: 277 aagcggatggtgg 289 ||||| ||||||| Sbjct: 91 aagcgcatggtgg 103
>dbj|AP004502.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT07E11, TM0033b, complete sequence Length = 80917 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 407 gcgtcaaggagagcagcgactgggtcatgaacagcatgatgaacggcac 455 |||| |||| |||||| |||||||||||||||||||||| |||||||| Sbjct: 62956 gcgttaaggcgagcagtgactgggtcatgaacagcatgaacaacggcac 62908 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 407 gcgtcaaggagagcagcgactgggtcatgaacagcatga 445 |||| |||| |||||| |||||||||||||||||||||| Sbjct: 77299 gcgttaaggcgagcagtgactgggtcatgaacagcatga 77337 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 407 gcgtcaaggagagcagcgactgggtcatgaacagcatga 445 |||| |||| |||||| |||||||||||||||||||||| Sbjct: 47149 gcgttaaggcgagcagtgactgggtcatgaacagcatga 47111 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggt 311 |||||||| ||||||| ||||||||| ||||||||||| Sbjct: 55815 gtgaagcgcatggtggcggagtaccggaagccggtggt 55778 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Minus Query: 412 aaggagagcagcgactgggtcatgaacagcatgatgaacggcac 455 |||| |||||| |||||||| ||||||||||||| |||||||| Sbjct: 55674 aaggcgagcagtgactgggtgatgaacagcatgaacaacggcac 55631
>emb|AJ238754.1|CCL238754 Citrus clementina X Citrus reticulata mRNA for phenylalanine-ammonia lyase, clone Fpal2 Length = 2471 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 256 gggagccatttggatgccgtgaagcggatggtggaggagtaccgtaagccggtggt 311 |||||||||||||| | |||||||| ||||||| ||||||| | ||||||||||| Sbjct: 262 gggagccatttggaggaagtgaagcgtatggtggcggagtacaggaagccggtggt 317
>emb|AJ238753.1|CCL238753 Citrus clementina X Citrus reticulata mRNA for phenylalanine-ammonia lyase, clone Fpal1 Length = 2427 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 256 gggagccatttggatgccgtgaagcggatggtggaggagtaccgtaagccggtggt 311 |||||||||||||| | |||||||| ||||||| ||||||| | ||||||||||| Sbjct: 226 gggagccatttggaggaagtgaagcgaatggtggcggagtacaggaagccggtggt 281
>dbj|AB236800.1| Trifolium pratense RNA for putative phenylalanine ammonia lyase, complete cds, clone: C1961 Length = 2522 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 256 gggagccatttggatgccgtgaagcggatggtggaggagtaccgtaagccggtggt 311 ||||| |||||||||| |||||||| ||||| |||||||||||||| ||| |||| Sbjct: 178 gggagtcatttggatgaggtgaagcgtatggttgaggagtaccgtaacccgctggt 233
>gb|U43338.1|CLU43338 Citrus limon phenylalanine ammonia-lyase (pal6) mRNA, complete cds Length = 2607 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Plus Query: 378 ggtggagctcgatgagtccgcccgcggccgcgtcaaggagagcagcgactgggtcatgaa 437 ||||||||| | ||| ||||||||| | ||||||||| |||||||| ||||| ||| | Sbjct: 416 ggtggagctagcggaggccgcccgcgccggcgtcaaggccagcagcgattgggtgatgga 475 Query: 438 cagcatgatgaa 449 |||||||||||| Sbjct: 476 cagcatgatgaa 487
>dbj|D10002.1|PEAPAL1 P.sativum gene for phenylalanine ammonia-lyase, complete cds Length = 4415 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 256 gggagccatttggatgccgtgaagcggatggtggaggagtaccgtaagccggtggt 311 ||||| || ||||||| |||||||| ||||||||||||||| | ||||||||||| Sbjct: 1644 gggagtcacttggatgaggtgaagcgtatggtggaggagtacaggaagccggtggt 1699
>dbj|D10001.1|PEAPAL P.sativum mRNA for phenylalanine ammonia-lyase, complete cds Length = 2367 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 256 gggagccatttggatgccgtgaagcggatggtggaggagtaccgtaagccggtggt 311 ||||| || ||||||| |||||||| ||||||||||||||| | ||||||||||| Sbjct: 192 gggagtcacttggatgaggtgaagcgtatggtggaggagtacaggaagccggtggt 247
>gb|AF036948.1|AF036948 Prunus avium phenylalanine ammonia-lyase (PAL1) mRNA, complete cds Length = 2448 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 256 gggagccatttggatgccgtgaagcggatggtggaggagtaccgtaagccggtggtga 313 |||||||| ||||||| |||||||| ||||||| |||||| | ||||||||||||| Sbjct: 202 gggagccacttggatgaggtgaagcgcatggtggctgagtacaggaagccggtggtga 259 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 409 gtcaaggagagcagcgactgggtcatgaacagcatga 445 ||||||| |||||||||||||||||| ||||||||| Sbjct: 358 gtcaaggccagcagcgactgggtcatggacagcatga 394
>gb|AF326116.1|AF326116 Agastache rugosa phenylalanine ammonia-lyase (PAL) mRNA, complete cds Length = 2448 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 407 gcgtcaaggagagcagcgactgggtcatgaacagcatgatgaacggcaccgac 459 ||||||||| |||||||||||||| ||| ||||||||| || ||||||||| Sbjct: 360 gcgtcaaggccagcagcgactgggttatggacagcatgagcaaaggcaccgac 412 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 277 aagcggatggtggaggagtaccgtaagccggtggtga 313 ||||||||||||||||||| | | ||||||||||||| Sbjct: 227 aagcggatggtggaggagttcaggaagccggtggtga 263
>gb|M91192.1|TFRPAL1X Trifolium subterraneum phenylalanine ammonia-lyase (PAL1) gene, complete cds Length = 3300 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Plus Query: 256 gggagccatttggatgccgtgaagcggatggtggaggagtaccg 299 ||||| || ||||||| |||||||| ||||||||||||||||| Sbjct: 502 gggagtcacttggatgaggtgaagcgtatggtggaggagtaccg 545
>gb|AY541031.1| Allium cepa phenylalanine lyase mRNA, complete cds Length = 2322 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Plus Query: 251 tgtccgggagccatttggatgccgtgaagcggatggtggaggagtac 297 ||||||||||||||||||| | |||||||| |||||| | |||||| Sbjct: 193 tgtccgggagccatttggaggaggtgaagcgaatggtgaatgagtac 239
>dbj|D21290.1|RICSS577 Oryza sativa SS577 mRNA for phenylalanine ammonia-lyase, partial sequence Length = 270 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 433 atgaacagcatgatgaacggcac 455 ||||||||||||||||||||||| Sbjct: 3 atgaacagcatgatgaacggcac 25
>emb|X52953.1|DMPAL1 Glycine max PAL1 gene for phenylalanine ammonia lyase (EC 4.3.1.5) Length = 4085 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Plus Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggt 311 |||||||| ||||||| |||||||| ||||||||||| Sbjct: 309 gtgaagcgcatggtggccgagtaccgcaagccggtggt 346 Score = 40.1 bits (20), Expect = 6.2 Identities = 38/44 (86%) Strand = Plus / Plus Query: 412 aaggagagcagcgactgggtcatgaacagcatgatgaacggcac 455 |||| |||||| || ||||| ||||||||||||| |||||||| Sbjct: 450 aaggcgagcagtgagtgggtgatgaacagcatgaacaacggcac 493
>dbj|D10003.1|PEAPAL2 P.sativum gene for phenylalanine ammonia-lyase, complete cds Length = 4472 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Plus Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggt 311 ||||| || |||||||| |||||||| ||||||||||| Sbjct: 2241 gtgaaacgtatggtggatgagtaccggaagccggtggt 2278
>ref|XM_472779.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1779 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 339 cgccatggtcgccgcggtggc 359 ||||||||||||||||||||| Sbjct: 696 cgccatggtcgccgcggtggc 716
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 289 gaggagtaccgtaagccggtggtga 313 ||||||||||| ||||||||||||| Sbjct: 1660176 gaggagtaccgcaagccggtggtga 1660200 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 289 gaggagtaccgtaagccggtggtga 313 ||||||||||| ||||||||||||| Sbjct: 1402798 gaggagtaccgcaagccggtggtga 1402774
>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14, complete sequence Length = 139418 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 cgccatggtcgccgcggtggc 359 ||||||||||||||||||||| Sbjct: 46646 cgccatggtcgccgcggtggc 46626
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 actggggcaaggcggcggagg 247 ||||||||||||||||||||| Sbjct: 20333796 actggggcaaggcggcggagg 20333816
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 actggggcaaggcggcggagg 247 ||||||||||||||||||||| Sbjct: 20260010 actggggcaaggcggcggagg 20260030
>emb|BX000456.3|CNS08CDD Oryza sativa chromosome 12, . BAC OSJNBa0050D07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 185820 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 227 actggggcaaggcggcggagg 247 ||||||||||||||||||||| Sbjct: 177905 actggggcaaggcggcggagg 177885
>dbj|D78640.1|IPBPALA Ipomoea batatas mRNA for phenylalanine ammonia-lyase, complete cds Length = 2396 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 418 agcagcgactgggtcatgaacagcatgatgaacggcaccga 458 ||||| |||||||| ||||||||||||| || |||||||| Sbjct: 339 agcagtgactgggttatgaacagcatgaacaatggcaccga 379
>ref|XM_530038.1| PREDICTED: Pan troglodytes LOC455993 (LOC455993), mRNA Length = 1075 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 gtggcacagccggcgcgggc 215 |||||||||||||||||||| Sbjct: 681 gtggcacagccggcgcgggc 662
>ref|XM_515935.1| PREDICTED: Pan troglodytes similar to Alkyldihydroxyacetonephosphate synthase, peroxisomal precursor (Alkyl-DHAP synthase) (Alkylglycerone-phosphate synthase) (LOC459770), mRNA Length = 1791 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 gtcgccgcggtggctgccgg 365 |||||||||||||||||||| Sbjct: 1415 gtcgccgcggtggctgccgg 1434
>gb|AF491307.2| Pseudomonas putida NCIB 9816-4 plasmid pDTG1, complete sequence Length = 83042 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 accatcgccatggtcgccgcggtg 357 |||||| ||||||||||||||||| Sbjct: 44085 accatccccatggtcgccgcggtg 44062
>gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683B12, complete sequence Length = 187523 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 accatcgccatggtcgccgc 353 |||||||||||||||||||| Sbjct: 8627 accatcgccatggtcgccgc 8608
>gb|AY694188.1| Camellia sinensis phenylalanine ammonia-lyase mRNA, complete cds Length = 2241 Score = 40.1 bits (20), Expect = 6.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggtga 313 |||||| | ||||||||||||| || ||||||||||||| Sbjct: 166 gtgaagggcatggtggaggagtttcggaagccggtggtga 205
>gb|AY208917.2| Pseudomonas sp. ND6 plasmid pND6-1, complete sequence Length = 101858 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 accatcgccatggtcgccgcggtg 357 |||||| ||||||||||||||||| Sbjct: 83890 accatccccatggtcgccgcggtg 83867
>gb|BC072804.1| Xenopus laevis MGC80135 protein, mRNA (cDNA clone MGC:80135 IMAGE:4970053), complete cds Length = 2415 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 cacagatcaatccagataca 52 |||||||||||||||||||| Sbjct: 1826 cacagatcaatccagataca 1807
>gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668F02, complete sequence Length = 178061 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 333 gaccatcgccatggtcgccgcggt 356 ||||||||||||| |||||||||| Sbjct: 96825 gaccatcgccatgctcgccgcggt 96848
>gb|AC149221.2| Mus musculus BAC clone RP23-402P22 from chromosome 7, complete sequence Length = 202580 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 aagacacagatcaatccaga 48 |||||||||||||||||||| Sbjct: 123271 aagacacagatcaatccaga 123290
>gb|AY612639.1| Chlamydomonas reinhardtii NAR1.2 mRNA, complete cds Length = 1908 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 ccatcgccatggtcgccgcggtgg 358 ||||||||||||||||||| |||| Sbjct: 658 ccatcgccatggtcgccgccgtgg 681
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 gcatgatgaacggcaccgac 459 |||||||||||||||||||| Sbjct: 1109349 gcatgatgaacggcaccgac 1109330
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 gcatgatgaacggcaccgac 459 |||||||||||||||||||| Sbjct: 1215556 gcatgatgaacggcaccgac 1215537
>gb|AY372451.1| Populus balsamifera subsp. trichocarpa x Populus deltoides phenylalanine ammonia lyase (PAL) mRNA, complete cds Length = 2136 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 418 agcagcgactgggtcatgaacagcatga 445 ||||| |||||||||||| ||||||||| Sbjct: 262 agcagtgactgggtcatggacagcatga 289
>gb|AC140248.3| Mus musculus BAC clone RP24-285L8 from chromosome 7, complete sequence Length = 182854 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 aagacacagatcaatccaga 48 |||||||||||||||||||| Sbjct: 57392 aagacacagatcaatccaga 57411
>gb|AC092327.4| Homo sapiens chromosome 16 clone RP11-158I3, complete sequence Length = 189756 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 atggcctgtgcgtggcacag 204 |||||||||||||||||||| Sbjct: 153390 atggcctgtgcgtggcacag 153409
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 aacagcatgatgaacggcac 455 |||||||||||||||||||| Sbjct: 2477961 aacagcatgatgaacggcac 2477980
>gb|AF525494.1| Pseudomonas fluorescens plasmid pLP6a catechol-2,3-dioxygenase (nahH) gene, partial cds; 2-hydroxymuconic semialdehyde dehydrogenase (nahI), 2-hydroxymuconic semialdehyde hydrolase (nahN), 2-oxypent-4-enoate hydratase (nahL), acetaldehyde dehydrogenase (nahO), 4-hydroxy-2-oxovalerate aldolase (nahM), 4-oxalcrotonate decarboxylase (nahK), and 4-oxalocrotonate tautomerase (nahJ) genes, complete cds; and methyl-accepting chemotaxis protein (nahY) gene, partial cds Length = 7152 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 accatcgccatggtcgccgcggtg 357 |||||| ||||||||||||||||| Sbjct: 3955 accatccccatggtcgccgcggtg 3978
>gb|AC110618.3| Homo sapiens BAC clone RP11-632N3 from 4, complete sequence Length = 74096 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ttcttcaagacacagatcaa 42 |||||||||||||||||||| Sbjct: 9478 ttcttcaagacacagatcaa 9459
>gb|AC024591.4| Homo sapiens chromosome 16 clone RP11-511G21, complete sequence Length = 104680 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 atggcctgtgcgtggcacag 204 |||||||||||||||||||| Sbjct: 63147 atggcctgtgcgtggcacag 63166
>gb|AC132231.6| Mus musculus BAC clone RP24-484D4 from chromosome 1, complete sequence Length = 188905 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 ccagatacacatacacctgc 63 |||||||||||||||||||| Sbjct: 106780 ccagatacacatacacctgc 106799
>gb|AF401636.1|AF401636 Rehmannia glutinosa phenylalanine ammonia-lyase (PAL1) mRNA, complete cds Length = 2444 Score = 40.1 bits (20), Expect = 6.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggtga 313 |||||| ||||||||||||||| | | ||||||| ||||| Sbjct: 222 gtgaagaggatggtggaggagttcaggaagccggcggtga 261
>gb|AC019080.6| Homo sapiens BAC clone RP11-337N6 from 2, complete sequence Length = 179616 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 gtcgccgcggtggctgccgg 365 |||||||||||||||||||| Sbjct: 104275 gtcgccgcggtggctgccgg 104294
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 tcgccatggtcgccgcggtg 357 |||||||||||||||||||| Sbjct: 1773510 tcgccatggtcgccgcggtg 1773529
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 cgccagcctgaccatcgcca 343 |||||||||||||||||||| Sbjct: 4507930 cgccagcctgaccatcgcca 4507949
>dbj|AB168092.1| Chlamydomonas reinhardtii LciA mRNA for low-CO2 inducible protein LCIA, complete cds Length = 1940 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 ccatcgccatggtcgccgcggtgg 358 ||||||||||||||||||| |||| Sbjct: 672 ccatcgccatggtcgccgccgtgg 695
>dbj|AK104343.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-B09, full insert sequence Length = 1342 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 accatcgccatggtcgccgc 353 |||||||||||||||||||| Sbjct: 138 accatcgccatggtcgccgc 119
>dbj|AK065911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045E01, full insert sequence Length = 1377 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 accatcgccatggtcgccgc 353 |||||||||||||||||||| Sbjct: 159 accatcgccatggtcgccgc 140
>gb|AF411134.1| Lactuca sativa phenylalanine ammonia-lyase2 mRNA, complete cds Length = 2380 Score = 40.1 bits (20), Expect = 6.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 274 gtgaagcggatggtggaggagtaccgtaagccggtggtga 313 |||||||||||||||| ||||| | ||||||||||||| Sbjct: 203 gtgaagcggatggtggcggagtttaggaagccggtggtga 242
>gb|AY879309.1| Rhodiola sachalinensis phenylalanine-ammonia lyase (PALcl1) mRNA, complete cds Length = 2389 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 274 gtgaagcggatggtggaggagtac 297 |||||| ||||||||||||||||| Sbjct: 235 gtgaagaggatggtggaggagtac 258
>gb|U13232.1|PPU13232 Pseudomonas putida NCIB9816 acetaldehyde dehydrogenase (nahO) and 4-hydroxy-2-oxovalerate aldolase (nahM) genes, complete cds, and 4-oxalocrotonate decarboxylase (nahK) and 2-oxopent-4-enoate hydratase (nahL) genes, partial cds Length = 2180 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 accatcgccatggtcgccgcggtg 357 |||||| ||||||||||||||||| Sbjct: 510 accatccccatggtcgccgcggtg 533
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 accatcgccatggtcgccgc 353 |||||||||||||||||||| Sbjct: 186450 accatcgccatggtcgccgc 186431
>dbj|D43802.1|POPPALG2BA Populus kitakamiensis gene for phenylalanine ammonia-lyase, complete cds (exon 1 and exon 2) Length = 4652 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 418 agcagcgactgggtcatgaacagcatga 445 ||||| |||||||||||| ||||||||| Sbjct: 1553 agcagtgactgggtcatggacagcatga 1580 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,278,816 Number of Sequences: 3902068 Number of extensions: 3278816 Number of successful extensions: 62319 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61466 Number of HSP's gapped (non-prelim): 822 length of query: 459 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 437 effective length of database: 17,147,199,772 effective search space: 7493326300364 effective search space used: 7493326300364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
