ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast04c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 103 5e-19
2gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome... 103 5e-19
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
4gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome... 103 5e-19
5dbj|AK119620.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
6dbj|AK109516.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
7dbj|AK103138.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
8dbj|AB186750.1| Sphingomonas paucimobilis orf1, orf2, ligM, metF... 42 1.6
9gb|AC154576.2| Mus musculus BAC clone RP23-372B6 from chromosome... 42 1.6
10dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.6
11emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.6
12gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.6
13dbj|AB070935.1| Streptomyces avermitilis ochronotic pigment bios... 42 1.6
14gb|AC161181.3| Mus musculus chromosome 3, clone RP23-10I23, comp... 40 6.2
15gb|AC104911.10| Mus musculus chromosome 3, clone RP23-427B4, com... 40 6.2
16gb|AC186002.3| Pan troglodytes BAC clone CH251-86D23 from chromo... 40 6.2
17gb|AC130677.12| Mus musculus chromosome 7, clone RP24-529F12, co... 40 6.2
18gb|AY436763.1| Ptychodera flava transcription factor Lox2 mRNA, ... 40 6.2
19gb|AC139884.8| Mus musculus chromosome 6, clone RP23-343E20, com... 40 6.2
20gb|AC183602.2| Pan troglodytes BAC clone CH251-350L8 from chromo... 40 6.2
21gb|AC140370.3| Mus musculus BAC clone RP24-75N6 from chromosome ... 40 6.2
22gb|AC126044.4| Mus musculus BAC clone RP23-12O8 from chromosome ... 40 6.2
23gb|AC084054.12| Mus Musculus Strain C57BL6/J chromosome 5 BAC, R... 40 6.2
24gb|AC114915.3| Mus musculus BAC clone RP23-54K21 from 2, complet... 40 6.2
25gb|AC104914.9| Mus musculus chromosome 9, clone RP23-108E20, com... 40 6.2
26gb|AC122196.2| Mus musculus BAC clone RP23-50P5 from 5, complete... 40 6.2
27gb|AC096785.29| Mus musculus strain C57BL/6J clone rp23-382i2 ma... 40 6.2
28gb|AC091523.23| Mus musculus strain C57BL/6J clone rp23-77a8 map... 40 6.2
29gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
30emb|AL022476.2|HS323M22 Human DNA sequence from clone RP3-323M22... 40 6.2
31gb|AC157094.8| Mus musculus 6 BAC RP24-445L10 (Roswell Park Canc... 40 6.2
32emb|AL606472.13| Mouse DNA sequence from clone RP23-66B21 on chr... 40 6.2
33gb|AC116926.1| Genomic sequence for Oryza sativa (japonica culti... 40 6.2
34dbj|AK051589.1| Mus musculus 12 days embryo spinal ganglion cDNA... 40 6.2
35dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
36gb|AC100735.15| Mus musculus chromosome 7, clone RP24-331F7, com... 40 6.2
37gb|AC010585.6|AC010585 Homo sapiens chromosome 5 clone CTC-315O2... 40 6.2
38gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome... 40 6.2
39dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.2
40gb|AC154598.2| Mus musculus BAC clone RP23-356P6 from 14, comple... 40 6.2
41emb|AL139317.5|CNS01DXI Human chromosome 14 DNA sequence BAC R-5... 40 6.2
42emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on ch... 40 6.2
43gb|AC074314.29| 433m13, complete sequence 40 6.2
44gb|AY610054.1| Sus scrofa clone Clu_6039.scr.msk.p1.Contig1, mRN... 40 6.2
45gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
46gb|AC125100.4| Mus musculus BAC clone RP24-206N14 from 9, comple... 40 6.2
47gb|AC151574.2| Mus musculus BAC clone RP23-430A4 from 7, complet... 40 6.2
48gb|AC153822.13| Mus musculus 10 BAC RP23-56N1 (Roswell Park Canc... 40 6.2
49emb|AL844844.8| Mouse DNA sequence from clone RP23-103D7 on chro... 40 6.2
50gb|AC153730.2| Mus musculus 6 BAC RP24-539M22 (Roswell Park Canc... 40 6.2
51emb|AL845316.3| Mouse DNA sequence from clone RP23-348I7 on chro... 40 6.2
52emb|AL929054.5| Mouse DNA sequence from clone RP23-454A14 on chr... 40 6.2
53emb|AL840628.3| Mouse DNA sequence from clone RP23-311O2 on chro... 40 6.2 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                           
Query: 374     ggggcgtacatcggcgtcaacatcggcacggccatgtcatcggtgccggctgccacgcag 433
               ||||||||||||||||||||||| |||||||||||| | ||||| |||||  | || |||
Sbjct: 6340047 ggggcgtacatcggcgtcaacattggcacggccatgacgtcggtaccggcgccgacacag 6340106

                                       
Query: 434     atcacgacgctgctccgctcgcag 457
               ||||||||||||||||||||||||
Sbjct: 6340107 atcacgacgctgctccgctcgcag 6340130
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>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09,
             complete sequence
          Length = 146568

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                         
Query: 374   ggggcgtacatcggcgtcaacatcggcacggccatgtcatcggtgccggctgccacgcag 433
             ||||||||||||||||||||||| |||||||||||| | ||||| |||||  | || |||
Sbjct: 20173 ggggcgtacatcggcgtcaacattggcacggccatgacgtcggtaccggcgccgacacag 20232

                                     
Query: 434   atcacgacgctgctccgctcgcag 457
             ||||||||||||||||||||||||
Sbjct: 20233 atcacgacgctgctccgctcgcag 20256
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                           
Query: 374     ggggcgtacatcggcgtcaacatcggcacggccatgtcatcggtgccggctgccacgcag 433
               ||||||||||||||||||||||| |||||||||||| | ||||| |||||  | || |||
Sbjct: 6339260 ggggcgtacatcggcgtcaacattggcacggccatgacgtcggtaccggcgccgacacag 6339319

                                       
Query: 434     atcacgacgctgctccgctcgcag 457
               ||||||||||||||||||||||||
Sbjct: 6339320 atcacgacgctgctccgctcgcag 6339343
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>gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024O21,
              complete sequence
          Length = 155651

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                          
Query: 374    ggggcgtacatcggcgtcaacatcggcacggccatgtcatcggtgccggctgccacgcag 433
              ||||||||||||||||||||||| |||||||||||| | ||||| |||||  | || |||
Sbjct: 153255 ggggcgtacatcggcgtcaacattggcacggccatgacgtcggtaccggcgccgacacag 153314

                                      
Query: 434    atcacgacgctgctccgctcgcag 457
              ||||||||||||||||||||||||
Sbjct: 153315 atcacgacgctgctccgctcgcag 153338
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>dbj|AK119620.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-H02, full
           insert sequence
          Length = 2049

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                       
Query: 374 ggggcgtacatcggcgtcaacatcggcacggccatgtcatcggtgccggctgccacgcag 433
           ||||||||||||||||||||||| |||||||||||| | ||||| |||||  | || |||
Sbjct: 309 ggggcgtacatcggcgtcaacattggcacggccatgacgtcggtaccggcgccgacacag 368

                                   
Query: 434 atcacgacgctgctccgctcgcag 457
           ||||||||||||||||||||||||
Sbjct: 369 atcacgacgctgctccgctcgcag 392
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>dbj|AK109516.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-H10, full
           insert sequence
          Length = 1838

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                       
Query: 374 ggggcgtacatcggcgtcaacatcggcacggccatgtcatcggtgccggctgccacgcag 433
           ||||||||||||||||||||||| |||||||||||| | ||||| |||||  | || |||
Sbjct: 89  ggggcgtacatcggcgtcaacattggcacggccatgacgtcggtaccggcgccgacacag 148

                                   
Query: 434 atcacgacgctgctccgctcgcag 457
           ||||||||||||||||||||||||
Sbjct: 149 atcacgacgctgctccgctcgcag 172
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>dbj|AK103138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033120F09, full
           insert sequence
          Length = 2075

 Score =  103 bits (52), Expect = 5e-19
 Identities = 76/84 (90%)
 Strand = Plus / Plus

                                                                       
Query: 374 ggggcgtacatcggcgtcaacatcggcacggccatgtcatcggtgccggctgccacgcag 433
           ||||||||||||||||||||||| |||||||||||| | ||||| |||||  | || |||
Sbjct: 335 ggggcgtacatcggcgtcaacattggcacggccatgacgtcggtaccggcgccgacacag 394

                                   
Query: 434 atcacgacgctgctccgctcgcag 457
           ||||||||||||||||||||||||
Sbjct: 395 atcacgacgctgctccgctcgcag 418
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>dbj|AB186750.1| Sphingomonas paucimobilis orf1, orf2, ligM, metF, ligH genes for
            putative formaldehyde dehydrogenase, putative alkyl
            salicylate esterase, vanillate/3-O-methylgallate
            O-demethylase, 5,10-methylenetetrahydrofolate reductase,
            10-formyltetrahydrofolate synthetase, partial and
            complete cds
          Length = 9491

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 299  ggcgacgacatggcgaagatc 319
            |||||||||||||||||||||
Sbjct: 3146 ggcgacgacatggcgaagatc 3166
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>gb|AC154576.2| Mus musculus BAC clone RP23-372B6 from chromosome 14, complete sequence
          Length = 152380

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 280   ggctgggcctttttcttttgg 300
             |||||||||||||||||||||
Sbjct: 54617 ggctgggcctttttcttttgg 54637
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 382     catcggcgtcaacatcggcacggcc 406
               |||||||| ||||||||||||||||
Sbjct: 6257047 catcggcggcaacatcggcacggcc 6257071
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 393     acatcggcacggccatgtcat 413
               |||||||||||||||||||||
Sbjct: 1565314 acatcggcacggccatgtcat 1565294
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 333     tcttgctgctggccgccgccg 353
               |||||||||||||||||||||
Sbjct: 2227086 tcttgctgctggccgccgccg 2227066
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>dbj|AB070935.1| Streptomyces avermitilis ochronotic pigment biosynthetic gene cluster
          Length = 4994

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 382  catcggcgtcaacatcggcacggcc 406
            |||||||| ||||||||||||||||
Sbjct: 4043 catcggcggcaacatcggcacggcc 4067
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>gb|AC161181.3| Mus musculus chromosome 3, clone RP23-10I23, complete sequence
          Length = 218083

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 289    tttttcttttggcgacgacatggcgaag 316
              |||||||||||||||| |||||| ||||
Sbjct: 209816 tttttcttttggcgactacatggggaag 209789
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>gb|AC104911.10| Mus musculus chromosome 3, clone RP23-427B4, complete sequence
          Length = 190932

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 289    tttttcttttggcgacgacatggcgaag 316
              |||||||||||||||| |||||| ||||
Sbjct: 172666 tttttcttttggcgactacatggggaag 172693
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>gb|AC186002.3| Pan troglodytes BAC clone CH251-86D23 from chromosome 9, complete
              sequence
          Length = 162651

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 99     ttgctcttcttgcccaagtt 118
              ||||||||||||||||||||
Sbjct: 158825 ttgctcttcttgcccaagtt 158806
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>gb|AC130677.12| Mus musculus chromosome 7, clone RP24-529F12, complete sequence
          Length = 166181

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 17077 tttttcttttggcgactacatggggaag 17104
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>gb|AY436763.1| Ptychodera flava transcription factor Lox2 mRNA, complete cds
          Length = 2301

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 381 acatcggcgtcaacatcggc 400
           ||||||||||||||||||||
Sbjct: 721 acatcggcgtcaacatcggc 740
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>gb|AC139884.8| Mus musculus chromosome 6, clone RP23-343E20, complete sequence
          Length = 227769

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 289    tttttcttttggcgacgacatggcgaag 316
              |||||||||||||||| |||||| ||||
Sbjct: 212900 tttttcttttggcgactacatggggaag 212927
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>gb|AC183602.2| Pan troglodytes BAC clone CH251-350L8 from chromosome 9, complete
             sequence
          Length = 165959

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    ttgctcttcttgcccaagtt 118
             ||||||||||||||||||||
Sbjct: 38882 ttgctcttcttgcccaagtt 38863
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>gb|AC140370.3| Mus musculus BAC clone RP24-75N6 from chromosome 7, complete sequence
          Length = 189786

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 289    tttttcttttggcgacgacatggcgaag 316
              |||||||||||||||| |||||| ||||
Sbjct: 115433 tttttcttttggcgactacatggggaag 115460
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>gb|AC126044.4| Mus musculus BAC clone RP23-12O8 from chromosome 1, complete sequence
          Length = 213412

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 94022 tttttcttttggcgactacatggggaag 94049
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>gb|AC084054.12| Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP23-137N6, complete
              sequence
          Length = 231589

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 289    tttttcttttggcgacgacatggcgaag 316
              |||||||||||||||| |||||| ||||
Sbjct: 206217 tttttcttttggcgactacatggggaag 206190
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>gb|AC114915.3| Mus musculus BAC clone RP23-54K21 from 2, complete sequence
          Length = 257013

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 37493 tttttcttttggcgactacatggggaag 37466
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>gb|AC104914.9| Mus musculus chromosome 9, clone RP23-108E20, complete sequence
          Length = 260181

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 98122 tttttcttttggcgactacatggggaag 98095
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>gb|AC122196.2| Mus musculus BAC clone RP23-50P5 from 5, complete sequence
          Length = 151406

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 11076 tttttcttttggcgactacatggggaag 11049
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>gb|AC096785.29| Mus musculus strain C57BL/6J clone rp23-382i2 map 18, complete sequence
          Length = 201304

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 83761 tttttcttttggcgactacatggggaag 83734
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>gb|AC091523.23| Mus musculus strain C57BL/6J clone rp23-77a8 map 1, complete sequence
          Length = 235509

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 289    tttttcttttggcgacgacatggcgaag 316
              |||||||||||||||| |||||| ||||
Sbjct: 130637 tttttcttttggcgactacatggggaag 130664
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>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02,
             complete sequence
          Length = 131922

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   agatcacgacgctgctccgc 451
             ||||||||||||||||||||
Sbjct: 84521 agatcacgacgctgctccgc 84502
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>emb|AL022476.2|HS323M22 Human DNA sequence from clone RP3-323M22 on chromosome 22, complete
             sequence
          Length = 194523

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ttgctcttcttgcccaagtt 118
             ||||||||||||||||||||
Sbjct: 37216 ttgctcttcttgcccaagtt 37235
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>gb|AC157094.8| Mus musculus 6 BAC RP24-445L10 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 176428

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 86794 tttttcttttggcgactacatggggaag 86821
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>emb|AL606472.13| Mouse DNA sequence from clone RP23-66B21 on chromosome 13 Contains the
             V1rh18 gene for vomeronasal 1 receptor H18 and six
             vomeronasal 1 receptor I (V1ri) pseudogenes, complete
             sequence
          Length = 130721

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 85520 tttttcttttggcgactacatggggaag 85493



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 44046 tttttcttttggcgactacatggggaag 44019
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>gb|AC116926.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OJ1341F06, from chromosome 10, complete
             sequence
          Length = 102520

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   agatcacgacgctgctccgc 451
             ||||||||||||||||||||
Sbjct: 89922 agatcacgacgctgctccgc 89941
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>dbj|AK051589.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130058O17
            product:unclassifiable, full insert sequence
          Length = 3332

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 289  tttttcttttggcgacgacatggcgaag 316
            |||||||||||||||| |||||| ||||
Sbjct: 1559 tttttcttttggcgactacatggggaag 1586
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 432      agatcacgacgctgctccgc 451
                ||||||||||||||||||||
Sbjct: 11276533 agatcacgacgctgctccgc 11276514
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>gb|AC100735.15| Mus musculus chromosome 7, clone RP24-331F7, complete sequence
          Length = 179974

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 35995 tttttcttttggcgactacatggggaag 36022
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>gb|AC010585.6|AC010585 Homo sapiens chromosome 5 clone CTC-315O24, complete sequence
          Length = 174882

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    ttgctcttcttgcccaagtt 118
             ||||||||||||||||||||
Sbjct: 56613 ttgctcttcttgcccaagtt 56594
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>gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome 7, complete sequence
          Length = 213581

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 289    tttttcttttggcgacgacatggcgaag 316
              |||||||||||||||| |||||| ||||
Sbjct: 166640 tttttcttttggcgactacatggggaag 166667
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 336     tgctgctggccgccgccgaa 355
               ||||||||||||||||||||
Sbjct: 1522586 tgctgctggccgccgccgaa 1522605
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>gb|AC154598.2| Mus musculus BAC clone RP23-356P6 from 14, complete sequence
          Length = 206646

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 289    tttttcttttggcgacgacatggcgaag 316
              |||||||||||||||| |||||| ||||
Sbjct: 113099 tttttcttttggcgactacatggggaag 113072
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>emb|AL139317.5|CNS01DXI Human chromosome 14 DNA sequence BAC R-589M4 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 190648

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     ttgctcttcttgcccaagtt 118
              ||||||||||||||||||||
Sbjct: 150367 ttgctcttcttgcccaagtt 150386
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>emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on chromosome 9, complete
             sequence
          Length = 203615

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 57644 tttttcttttggcgactacatggggaag 57617
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>gb|AC074314.29| 433m13, complete sequence
          Length = 209644

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 289    tttttcttttggcgacgacatggcgaag 316
              |||||||||||||||| |||||| ||||
Sbjct: 174477 tttttcttttggcgactacatggggaag 174450
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>gb|AY610054.1| Sus scrofa clone Clu_6039.scr.msk.p1.Contig1, mRNA sequence
          Length = 1975

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 334 cttgctgctggccgccgccg 353
           ||||||||||||||||||||
Sbjct: 295 cttgctgctggccgccgccg 314
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 432      agatcacgacgctgctccgc 451
                ||||||||||||||||||||
Sbjct: 11282973 agatcacgacgctgctccgc 11282954
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>gb|AC125100.4| Mus musculus BAC clone RP24-206N14 from 9, complete sequence
          Length = 169501

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 62576 tttttcttttggcgactacatggggaag 62549
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>gb|AC151574.2| Mus musculus BAC clone RP23-430A4 from 7, complete sequence
          Length = 219246

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 289    tttttcttttggcgacgacatggcgaag 316
              |||||||||||||||| |||||| ||||
Sbjct: 175136 tttttcttttggcgactacatggggaag 175163
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>gb|AC153822.13| Mus musculus 10 BAC RP23-56N1 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 217746

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 46020 tttttcttttggcgactacatggggaag 45993
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>emb|AL844844.8| Mouse DNA sequence from clone RP23-103D7 on chromosome 2, complete
             sequence
          Length = 213953

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 73367 tttttcttttggcgactacatggggaag 73394
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>gb|AC153730.2| Mus musculus 6 BAC RP24-539M22 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 151428

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 59735 tttttcttttggcgactacatggggaag 59762
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>emb|AL845316.3| Mouse DNA sequence from clone RP23-348I7 on chromosome X, complete
             sequence
          Length = 197688

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 34001 tttttcttttggcgactacatggggaag 34028
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>emb|AL929054.5| Mouse DNA sequence from clone RP23-454A14 on chromosome 2, complete
             sequence
          Length = 198497

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 289   tttttcttttggcgacgacatggcgaag 316
             |||||||||||||||| |||||| ||||
Sbjct: 66713 tttttcttttggcgactacatggggaag 66686
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>emb|AL840628.3| Mouse DNA sequence from clone RP23-311O2 on chromosome 4, complete
            sequence
          Length = 57876

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 289  tttttcttttggcgacgacatggcgaag 316
            |||||||||||||||| |||||| ||||
Sbjct: 5650 tttttcttttggcgactacatggggaag 5623


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,868,086
Number of Sequences: 3902068
Number of extensions: 2868086
Number of successful extensions: 65207
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64532
Number of HSP's gapped (non-prelim): 675
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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