>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding|
           protein MBD6)
          Length = 1003

 Score = 32.7 bits (73), Expect = 0.51
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 267 SSFTPPSDLYSLRRHCPGCPLFDRISSRFPPPFG-SANLGASPGPDSQPVATGDL*SFVS 443
           +S +PPSD           PLF    +  PPP   S NL A PGP SQP  +    + + 
Sbjct: 250 ASSSPPSDP----------PLFHCSDALTPPPLPPSNNLPAHPGPASQPPVSS---ATMH 296

Query: 444 SPVVRGPM 467
            P+V GP+
Sbjct: 297 LPLVLGPL 304

>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4|
            (Trithorax homolog 2)
          Length = 2715

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
 Frame = +2

Query: 35   LFPQSFRSPLPSSVSFLAFLAPGRNFRHSHATLA-----PLPIPFSPSCWCHHGIDRIGN 199
            L P S  +P P+  SF        N+  S   L      PLP P SPS   HH I  +G+
Sbjct: 1845 LRPDSGSAPPPAPRSFSGARIKVPNYSPSRRPLGGVSFGPLPSPGSPSSLTHH-IPTVGD 1903

Query: 200  P----RPRRNR 220
            P     PRR+R
Sbjct: 1904 PDFPAPPRRSR 1914

>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)|
          Length = 2001

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = +1

Query: 136 PPPYPFLPELLVSPRDRSDRKSQAEKKPCLVFGFVRNPPLPFFEALSLRPPIYTPFAGIV 315
           PPP P  P  +++P   S +  Q    P   F     P LP   +    PP  TP AG+ 
Sbjct: 159 PPPPPTGPRSILNPPTPSQQHQQQHHHPN-PFVAASAPSLPPPPSSLQAPPAITPIAGLS 217

Query: 316 PDVPCS 333
              P S
Sbjct: 218 APAPAS 223

>FANCA_MOUSE (Q9JL70) Fanconi anemia group A protein homolog (Protein FACA)|
          Length = 1439

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
 Frame = +1

Query: 154 LPELLVSPRDRSDRKSQAE---KKPCLVFGFVRNPPLPFFEALSLRPPIYTPF------- 303
           L E L SP D ++R+SQA    KK  +VF      P+P  EA   R P Y          
Sbjct: 526 LYEDLSSPGDIAERESQAVQDVKKAIMVFEQTGKIPMPVLEASIFRRPYYVSHFLPTLLA 585

Query: 304 AGIVPDVP 327
             ++P+VP
Sbjct: 586 PRVLPEVP 593

>DYN2_HUMAN (P50570) Dynamin-2 (EC 3.6.5.5)|
          Length = 870

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +3

Query: 279 PPSD---LYSLRRHCPGCPLFDRISSRFPPPFGSANLGASPGPDSQPVATGDL*SFVSSP 449
           PP D   L S   H P  P    +SS  PP    A  G +PGP   PV  G   SF + P
Sbjct: 750 PPVDDTWLQSASSHSP-TPQRRPVSSIHPPGRPPAVRGPTPGPPLIPVPVGAAASFSAPP 808

Query: 450 VVRGP 464
           +   P
Sbjct: 809 IPSRP 813

>YM60_YEAST (Q03649) Hypothetical UPF0017 protein YMR210w|
          Length = 449

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 242 AIPHCRFLKLFHSALRFILPSPALSRMSPVRPNLESIPASLR 367
           A P CRFLK+FH  +      P L  +    PN E I  + R
Sbjct: 406 AEPLCRFLKIFHDEITVKGLKPDLENVQLPDPNCEPIATTFR 447

>T629_SHISO (P16942) Transposase for insertion sequence element IS629|
          Length = 296

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = -1

Query: 420 PSRRVGNQDQGK----LRDLPIRREAGIDSRFGRTGDIRDNAGEGSINRRAE*KSFKKRQ 253
           PS  V + D+G     L      +EAG+ +  G TGD  DNA   SIN   + K   ++ 
Sbjct: 187 PSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAKVIHRKS 246

Query: 252 WGIAHETE 229
           W    E E
Sbjct: 247 WKNRAEVE 254

>GTSE1_MOUSE (Q8R080) G2 and S phase expressed protein 1 (Gtse-1) (B99 protein)|
          Length = 741

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +3

Query: 342 SSRFPPPFGSANLGASPGPDSQPVATG 422
           SSR  PP G   L ASPG  S PV+ G
Sbjct: 152 SSRVQPPMGEPQLLASPGLLSSPVSAG 178

>ACH4_DROME (P25162) Acetylcholine receptor protein, beta-like subunit 2|
           precursor
          Length = 519

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 328 CSTESRVDSRLPSDRQISELPL 393
           C + S  D+R P DRQ+SE+PL
Sbjct: 481 CQSPSLYDTRSPIDRQLSEIPL 502

>DYN2_RAT (P39052) Dynamin-2 (EC 3.6.5.5)|
          Length = 870

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +3

Query: 279 PPSD---LYSLRRHCPGCPLFDRISSRFPPPFGSANLGASPGPDSQPVATGDL*SFVSSP 449
           PP D   L +   H P  P    +SS  PP    A  G +PGP   P+  G   SF + P
Sbjct: 750 PPVDDTWLQNTSSHSP-TPQRRPVSSVHPPGRPPAVRGPTPGPPLIPMPVGATSSFSAPP 808

Query: 450 VVRGPMSANL 479
           +   P   N+
Sbjct: 809 IPSRPGPQNV 818

>Y2670_MYCBO (P63912) Hypothetical protein Mb2670|
          Length = 218

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 294 YSLRRHCPGCPLFDRISSRFPPPFGSANL 380
           YS+ R   G PLFDR+  RFP  FG  ++
Sbjct: 73  YSIGRRF-GLPLFDRLGRRFPKHFGPGHV 100

>Y2637_MYCTU (P63911) Hypothetical protein Rv2637/MT2715|
          Length = 218

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 294 YSLRRHCPGCPLFDRISSRFPPPFGSANL 380
           YS+ R   G PLFDR+  RFP  FG  ++
Sbjct: 73  YSIGRRF-GLPLFDRLGRRFPKHFGPGHV 100

>RAD14_YEAST (P28519) DNA repair protein RAD14|
          Length = 371

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = -3

Query: 388 EAPRFADPKGGGNR-LEIRSNRGHPGQCRRREYKSEGGVKELQKTAMGDCARNRKLDTVS 212
           E   FA  K GG   L+    R   G+  RRE K E  +KE++         NR  +   
Sbjct: 272 EVEAFAFKKWGGEEGLDEEWQRREEGKAHRREKKYEKKIKEMRLKTRAQEYTNRLREKKH 331

Query: 211 SRPGISYPIDPV 176
            +  I +  DPV
Sbjct: 332 GKAHIHHFSDPV 343

>CAN3_PIG (P43368) Calpain-3 (EC 3.4.22.-) (Calpain L3) (Calpain p94)|
           (Calcium-activated neutral proteinase 3) (CANP 3)
           (Muscle-specific calcium-activated neutral protease 3)
           (nCL-1)
          Length = 821

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -1

Query: 468 TLGLSPPAN*RKIKDLPSRRVGNQDQGKLRDLPIRREAGIDSRFGRT 328
           T G SP     K+ DL +R V N D+ +LRD  +  E   D R  RT
Sbjct: 272 TYGTSPSG--LKMGDLIARMVRNMDESRLRDSDLIPEGCSDDRPTRT 316

>TTC16_MACFA (Q95LZ5) Tetratricopeptide repeat protein 16 (TPR repeat protein 16)|
          Length = 872

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 14/101 (13%)
 Frame = -2

Query: 461  ASHHRRTDERLKIS----RRDGLGIRTRG----SSEICRSEGRRESTRDSVEQGTSGTMP 306
            A+ HRR   + K +    RR      T+G    SSEI  S+G R+    +    +    P
Sbjct: 712  AAAHRRNSSKTKATQGQGRRSSKTEATQGQRQSSSEIETSQGPRQEPSKTKTTRSPRQRP 771

Query: 305  AKGV*IGGRSERASK------NGNGGLRTKPKTRHGFFSAW 201
             K     GRS R SK         G LR+  KT   + S W
Sbjct: 772  RKVKAARGRSWRPSKLDATQGRRRGLLRSSTKTEAFYDSNW 812

>ZHX1_MOUSE (P70121) Zinc fingers and homeoboxes protein 1|
          Length = 873

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +1

Query: 187 SDRKSQAEKKPCLVFGFVRNPPLPFFEALSLRPPIYTPFAGIVPDVPCSTESRVDSRLPS 366
           S RKS     PC+V    ++P L     L   PPI TP      +   S++  V   + S
Sbjct: 3   SRRKSTT---PCMVLASEQDPDLELISDLDEGPPILTPVENAKAE-SVSSDEEVHGSVDS 58

Query: 367 DRQ 375
           D Q
Sbjct: 59  DNQ 61

>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 28/97 (28%), Positives = 38/97 (39%)
 Frame = -2

Query: 470  RHWASHHRRTDERLKISRRDGLGIRTRGSSEICRSEGRRESTRDSVEQGTSGTMPAKGV* 291
            RH  S H     R   SR   +G      S+  R +G   S +D   +G S         
Sbjct: 1555 RHSGSRHHEPSTRAGSSRHSQVGQGESAGSKTSRRQGSSVS-QDRDSEGHSEDSER---- 1609

Query: 290  IGGRSERASKNGNGGLRTKPKTRHGFFSAWDFLSDRS 180
               RSE AS+N  G  R   ++RHG  +      DR+
Sbjct: 1610 ---RSESASRNHYGSAR--EQSRHGSRNPRSHQEDRA 1641

>GAG_MLVAV (P03336) Gag polyprotein [Contains: Core protein p15; Inner coat|
           protein p12; Core shell protein p30; Nucleoprotein p10]
          Length = 536

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 318 GCPLFDRISSRFPPPFGSANLGASPGPDSQPVATGDL*SFVSSPVV 455
           G PL D +S   PPP+G   L +S G   +  AT        SP+V
Sbjct: 149 GGPLIDLLSED-PPPYGGQGLSSSDGDGDREEATSTSEIPAPSPIV 193

>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 409 GWESGPGEAPRFADPKGGGNRLEIRSNRGHPGQCRRR 299
           GWE+GP E       +G G R   R  RG  G+  R+
Sbjct: 416 GWEAGPREWGPSPGGRGDGPRRRPRKRRGRKGRMGRQ 452

>ZN619_HUMAN (Q8N2I2) Zinc finger protein 619|
          Length = 560

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 41  PQSFRSPLPSSVSFLAFLAPGRNFRHSHATLAPLPIPF 154
           P +  SPLP   +  A   PG     SHA + P  +PF
Sbjct: 481 PCAILSPLPPQHTCSALAPPGPPLSSSHAVVLPPSVPF 518


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,615,939
Number of Sequences: 219361
Number of extensions: 1853652
Number of successful extensions: 5742
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5737
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)