ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast03d03 |
|---|---|
| Clone Library Name | barley_pub |
>TITF1_HUMAN (P43699) Thyroid transcription factor 1 (Thyroid nuclear factor 1)| (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A) Length = 371 Score = 30.0 bits (66), Expect = 2.4 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = +1 Query: 289 RRQAPGIAAGQ-CSREPGRGGGAGSW*CPQEQQ 384 +RQA AA Q ++ G GGG G CPQ+QQ Sbjct: 217 KRQAKDKAAQQQLQQDSGGGGGGGGTGCPQQQQ 249
>TITF1_CAVPO (P97273) Thyroid transcription factor 1 (Thyroid nuclear factor 1)| (TTF-1) (Homeobox protein Nkx-2.1) (Fragment) Length = 112 Score = 29.6 bits (65), Expect = 3.2 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = +1 Query: 289 RRQAPGIAAGQ-CSREPGRGGGAGSW*CPQEQQ 384 +RQA AA Q ++ G GGG G CPQ+QQ Sbjct: 57 KRQAKDKAAQQQLQQDSGGGGGGGGAGCPQQQQ 89
>TITF1_CANFA (P43698) Thyroid transcription factor 1 (Thyroid nuclear factor 1)| (TTF-1) (Homeobox protein Nkx-2.1) Length = 371 Score = 29.6 bits (65), Expect = 3.2 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = +1 Query: 289 RRQAPGIAAGQ-CSREPGRGGGAGSW*CPQEQQ 384 +RQA AA Q ++ G GGG G CPQ+QQ Sbjct: 217 KRQAKDKAAQQQLQQDSGGGGGGGGAGCPQQQQ 249
>FMN2_MOUSE (Q9JL04) Formin-2| Length = 1567 Score = 29.3 bits (64), Expect = 4.1 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -1 Query: 359 LPAPPPRPGSRLHCPAAMPG 300 +P PPP PGS + P A+PG Sbjct: 1031 IPPPPPLPGSGIPPPPALPG 1050
>ZCH14_HUMAN (Q8WYQ9) Zinc finger CCHC domain-containing protein 14 (BDG-29)| Length = 949 Score = 28.9 bits (63), Expect = 5.4 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = -1 Query: 416 PASTPRRLHGHCCSCGHHQLPAPPPRP 336 PAS P H H HHQ P PP+P Sbjct: 757 PASNPNHHHHH-----HHQQPPAPPQP 778
>PDE4D_HUMAN (Q08499) cAMP-specific 3',5'-cyclic phosphodiesterase 4D (EC| 3.1.4.17) (DPDE3) (PDE43) Length = 809 Score = 28.9 bits (63), Expect = 5.4 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = -1 Query: 401 RRLHGHCCSCGHHQLPAPPPRPGSRLHCPAAMP 303 R LH H HH P PPP P + CP P Sbjct: 49 RLLHPH-----HHLPPPPPPSPQPQPQCPLQPP 76
>MOT3_HUMAN (O95907) Monocarboxylate transporter 3 (MCT 3)| Length = 504 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -1 Query: 386 HCCSCGHHQLPAPPPRPGSR 327 HCC+CG + PPP PG R Sbjct: 186 HCCACG--AVMRPPPGPGPR 203
>MNB_DROME (P49657) Serine/threonine-protein kinase minibrain (EC 2.7.12.1)| Length = 908 Score = 28.5 bits (62), Expect = 7.1 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = -1 Query: 386 HCCSCGHHQLPAPPPRPGSRLHCPAAM 306 H C Q+P PPP R+ PA M Sbjct: 697 HAMECDPPQMPPPPPNGHGRMRVPAIM 723
>ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (Immediate-early| protein IE110) (VMW110) (Alpha-0 protein) Length = 775 Score = 28.1 bits (61), Expect = 9.2 Identities = 20/53 (37%), Positives = 22/53 (41%) Frame = -1 Query: 413 ASTPRRLHGHCCSCGHHQLPAPPPRPGSRLHCPAAMPGAWRRRACGRDPHWHA 255 AS P R C + APPP PG R P A P A R R P H+ Sbjct: 395 ASGPARPRAAVAPC----VRAPPPGPGPRAPAPGAEPAA-RPADARRVPQSHS 442
>YWIS_WHEAT (P14723) Hypothetical 16 kDa protein in middle repetitive insertion| sequence WIS1 Length = 151 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/31 (38%), Positives = 14/31 (45%) Frame = -1 Query: 428 CMLRPASTPRRLHGHCCSCGHHQLPAPPPRP 336 C A+TP + HC C P PPP P Sbjct: 41 CTTSAAATPVPVPHHCLRCCDPPPPPPPPTP 71
>MOT3_RAT (O70461) Monocarboxylate transporter 3 (MCT 3)| Length = 492 Score = 28.1 bits (61), Expect = 9.2 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -1 Query: 386 HCCSCGHHQLPAPPPRP 336 HCC+CG P P P+P Sbjct: 186 HCCACGAVMRPPPGPQP 202
>DCAK2_HUMAN (Q8N568) Serine/threonine-protein kinase DCAMKL2 (EC 2.7.11.1)| (Doublecortin-like and CAM kinase-like 2) Length = 766 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 5/29 (17%) Frame = -1 Query: 359 LPAPPPRPGSRLHCPAAMP-----GAWRR 288 +PAP P HCP A P G WRR Sbjct: 735 VPAPTPPESPTPHCPPAAPGGERAGTWRR 763
>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 Length = 863 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = -1 Query: 356 PAPPPRPGSRLHCPAAMPGAWRRRACGRD 270 PAPPP P + H +A R R C RD Sbjct: 38 PAPPPNPTTPSHPESADEPGPRSRLCSRD 66
>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) (Hyperpolarization-activated cation channel 1) (HAC-1) Length = 863 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = -1 Query: 356 PAPPPRPGSRLHCPAAMPGAWRRRACGRD 270 PAPPP P + H +A R R C RD Sbjct: 38 PAPPPNPTTPSHPESADEPGPRARLCSRD 66
>PHLPP_HUMAN (O60346) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1717 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +1 Query: 286 RRRQAPGIAAGQCSREPGRGGGAGS 360 RRR AP AG + PG GGGA S Sbjct: 94 RRRGAPQPIAGGAAPVPGAGGGANS 118 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,727,378 Number of Sequences: 219361 Number of extensions: 645746 Number of successful extensions: 3026 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2655 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2995 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
