| Clone Name | bast03d02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01, complete sequence Length = 126532 Score = 339 bits (171), Expect = 5e-90 Identities = 327/379 (86%) Strand = Plus / Minus Query: 1 tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60 ||||| ||||||||||||| |||||||||||||| ||| |||| |||||||||||| || Sbjct: 15528 tgcccaacgccgacgtgccgaccaggctgacgaaggatttgttccccatggaccgcaccg 15469 Query: 61 tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120 | |||||||| ||||||||||| |||||||| ||||| ||| |||||||||||||||| | Sbjct: 15468 tgagctacgacggccaccgccgtccgctcacctcgttccagctcaccgtgctcggcgatg 15409 Query: 121 gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180 | |||||||| |||||| ||||||| |||||||||||||||||||||||||| || |||| Sbjct: 15408 gagctgtcttcgtcggcttcgtcgctaaccacgccgtcgtggacggcacctccttctggc 15349 Query: 181 acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240 ||||||| ||||||||||| || || ||||||||| ||| |||||||| |||||||| Sbjct: 15348 acttctttaacacgtgggcaggtctctgccgcggcacgccggtccagccgccggacttgc 15289 Query: 241 gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300 |||| ||||||||||||| ||||||||||||| ||||||| |||| ||| || |||| Sbjct: 15288 gccggaacttctttggcgactccacggccgtcatccgcttccccggtggcgcgggtcctg 15229 Query: 301 cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgctgcgg 360 | || || |||||||||| ||| ||||||||||| |||||| |||| |||||||| || | Sbjct: 15228 ccgtcaccttcgacgccgacgcgcccctccgcgagcgagtcctccatttcagcgccgccg 15169 Query: 361 caattcgcgacctgaaggc 379 | |||||||| |||||||| Sbjct: 15168 ccattcgcgagctgaaggc 15150
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 339 bits (171), Expect = 5e-90 Identities = 327/379 (86%) Strand = Plus / Minus Query: 1 tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60 ||||| ||||||||||||| |||||||||||||| ||| |||| |||||||||||| || Sbjct: 21896314 tgcccaacgccgacgtgccgaccaggctgacgaaggatttgttccccatggaccgcaccg 21896255 Query: 61 tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120 | |||||||| ||||||||||| |||||||| ||||| ||| |||||||||||||||| | Sbjct: 21896254 tgagctacgacggccaccgccgtccgctcacctcgttccagctcaccgtgctcggcgatg 21896195 Query: 121 gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180 | |||||||| |||||| ||||||| |||||||||||||||||||||||||| || |||| Sbjct: 21896194 gagctgtcttcgtcggcttcgtcgctaaccacgccgtcgtggacggcacctccttctggc 21896135 Query: 181 acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240 ||||||| ||||||||||| || || ||||||||| ||| |||||||| |||||||| Sbjct: 21896134 acttctttaacacgtgggcaggtctctgccgcggcacgccggtccagccgccggacttgc 21896075 Query: 241 gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300 |||| ||||||||||||| ||||||||||||| ||||||| |||| ||| || |||| Sbjct: 21896074 gccggaacttctttggcgactccacggccgtcatccgcttccccggtggcgcgggtcctg 21896015 Query: 301 cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgctgcgg 360 | || || |||||||||| ||| ||||||||||| |||||| |||| |||||||| || | Sbjct: 21896014 ccgtcaccttcgacgccgacgcgcccctccgcgagcgagtcctccatttcagcgccgccg 21895955 Query: 361 caattcgcgacctgaaggc 379 | |||||||| |||||||| Sbjct: 21895954 ccattcgcgagctgaaggc 21895936
>dbj|AK107567.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-C10, full insert sequence Length = 1886 Score = 339 bits (171), Expect = 5e-90 Identities = 327/379 (86%) Strand = Plus / Plus Query: 1 tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60 ||||| ||||||||||||| |||||||||||||| ||| |||| |||||||||||| || Sbjct: 504 tgcccaacgccgacgtgccgaccaggctgacgaaggatttgttccccatggaccgcaccg 563 Query: 61 tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120 | |||||||| ||||||||||| |||||||| ||||| ||| |||||||||||||||| | Sbjct: 564 tgagctacgacggccaccgccgtccgctcacctcgttccagctcaccgtgctcggcgatg 623 Query: 121 gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180 | |||||||| |||||| ||||||| |||||||||||||||||||||||||| || |||| Sbjct: 624 gagctgtcttcgtcggcttcgtcgctaaccacgccgtcgtggacggcacctccttctggc 683 Query: 181 acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240 ||||||| ||||||||||| || || ||||||||| ||| |||||||| |||||||| Sbjct: 684 acttctttaacacgtgggcaggtctctgccgcggcacgccggtccagccgccggacttgc 743 Query: 241 gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300 |||| ||||||||||||| ||||||||||||| ||||||| |||| ||| || |||| Sbjct: 744 gccggaacttctttggcgactccacggccgtcatccgcttccccggtggcgcgggtcctg 803 Query: 301 cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgctgcgg 360 | || || |||||||||| ||| ||||||||||| |||||| |||| |||||||| || | Sbjct: 804 ccgtcaccttcgacgccgacgcgcccctccgcgagcgagtcctccatttcagcgccgccg 863 Query: 361 caattcgcgacctgaaggc 379 | |||||||| |||||||| Sbjct: 864 ccattcgcgagctgaaggc 882
>dbj|AK072009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104O15, full insert sequence Length = 1883 Score = 323 bits (163), Expect = 3e-85 Identities = 325/379 (85%) Strand = Plus / Plus Query: 1 tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60 ||||| ||||||||||||| |||||||||||||| ||| |||| |||||||||||| || Sbjct: 505 tgcccaacgccgacgtgccgaccaggctgacgaaggatttgttccccatggaccgcaccg 564 Query: 61 tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120 | |||||||| ||||||||||| |||||||| ||||| ||| |||||||||||||||| | Sbjct: 565 tgagctacgacggccaccgccgtccgctcacctcgttccagctcaccgtgctcggcgatg 624 Query: 121 gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180 | |||||||| |||||| ||||||| |||||||||||||||| ||||||||| || |||| Sbjct: 625 gagctgtcttcgtcggcttcgtcgctaaccacgccgtcgtgggcggcacctccttctggc 684 Query: 181 acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240 ||||||| ||||||||||| || || ||||||||| ||| |||||||| |||| ||| Sbjct: 685 acttctttaacacgtgggcaggtctctgccgcggcacgccggtccagccgccgggcttgc 744 Query: 241 gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300 |||| ||||||||||||| ||||||||||||| ||||||| |||| ||| || |||| Sbjct: 745 gccggaacttctttggcgactccacggccgtcatccgcttccccggtggcgcgggtcctg 804 Query: 301 cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgctgcgg 360 | || || |||||||||| ||| ||||||||||| |||||| |||| |||||||| || | Sbjct: 805 ccgtcaccttcgacgccgacgcgcccctccgcgagcgagtcctccatttcagcgccgccg 864 Query: 361 caattcgcgacctgaaggc 379 | |||||||| |||||||| Sbjct: 865 ccattcgcgagctgaaggc 883
>ref|NM_190656.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2139 Score = 228 bits (115), Expect = 1e-56 Identities = 295/355 (83%) Strand = Plus / Plus Query: 1 tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60 |||||||||||||||| || |||| |||||| || || ||||| |||||||||||| || Sbjct: 422 tgcccgacgccgacgtcccgaccaagctgaccaaggacctgttccccatggaccgcaccg 481 Query: 61 tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120 | |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 482 tgagctacgacggccaccgccgcccgctcacgtcgttccaggtcaccgtgctcggcgacg 541 Query: 121 gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180 |||| || || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 542 gcgccgtgttcatcggcatcgtcgcgaaccacgccgtggtggacgggacctccttttggc 601 Query: 181 acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240 ||||||| || || ||||| | || ||||| |||| | || | ||| ||||||||| Sbjct: 602 acttctttaatacatgggccgccctttgccgtggcgcgtcacccaagctgccggacttcc 661 Query: 241 gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300 |||||| ||| ||||||| || || ||||||||||||||| | ||| ||| ||||| | Sbjct: 662 gccgcagcttttttggcgagtcaaccgccgtcctccgctttccaggaggcgtgggccccg 721 Query: 301 cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgc 355 | ||||| |||||||| | ||| || |||||||| || ||| | ||||||||||| Sbjct: 722 ccgtgaccttcgacgcggacgcgcctctccgcgagcgcgtctttcacttcagcgc 776
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 228 bits (115), Expect = 1e-56 Identities = 295/355 (83%) Strand = Plus / Plus Query: 1 tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60 |||||||||||||||| || |||| |||||| || || ||||| |||||||||||| || Sbjct: 36788704 tgcccgacgccgacgtcccgaccaagctgaccaaggacctgttccccatggaccgcaccg 36788763 Query: 61 tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120 | |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 36788764 tgagctacgacggccaccgccgcccgctcacgtcgttccaggtcaccgtgctcggcgacg 36788823 Query: 121 gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180 |||| || || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 36788824 gcgccgtgttcatcggcatcgtcgcgaaccacgccgtggtggacgggacctccttttggc 36788883 Query: 181 acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240 ||||||| || || ||||| | || ||||| |||| | || | ||| ||||||||| Sbjct: 36788884 acttctttaatacatgggccgccctttgccgtggcgcgtcacccaagctgccggacttcc 36788943 Query: 241 gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300 |||||| ||| ||||||| || || ||||||||||||||| | ||| ||| ||||| | Sbjct: 36788944 gccgcagcttttttggcgagtcaaccgccgtcctccgctttccaggaggcgtgggccccg 36789003 Query: 301 cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgc 355 | ||||| |||||||| | ||| || |||||||| || ||| | ||||||||||| Sbjct: 36789004 ccgtgaccttcgacgcggacgcgcctctccgcgagcgcgtctttcacttcagcgc 36789058
>dbj|AP003442.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1096A10 Length = 150976 Score = 228 bits (115), Expect = 1e-56 Identities = 295/355 (83%) Strand = Plus / Plus Query: 1 tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60 |||||||||||||||| || |||| |||||| || || ||||| |||||||||||| || Sbjct: 4282 tgcccgacgccgacgtcccgaccaagctgaccaaggacctgttccccatggaccgcaccg 4341 Query: 61 tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120 | |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 4342 tgagctacgacggccaccgccgcccgctcacgtcgttccaggtcaccgtgctcggcgacg 4401 Query: 121 gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180 |||| || || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 4402 gcgccgtgttcatcggcatcgtcgcgaaccacgccgtggtggacgggacctccttttggc 4461 Query: 181 acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240 ||||||| || || ||||| | || ||||| |||| | || | ||| ||||||||| Sbjct: 4462 acttctttaatacatgggccgccctttgccgtggcgcgtcacccaagctgccggacttcc 4521 Query: 241 gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300 |||||| ||| ||||||| || || ||||||||||||||| | ||| ||| ||||| | Sbjct: 4522 gccgcagcttttttggcgagtcaaccgccgtcctccgctttccaggaggcgtgggccccg 4581 Query: 301 cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgc 355 | ||||| |||||||| | ||| || |||||||| || ||| | ||||||||||| Sbjct: 4582 ccgtgaccttcgacgcggacgcgcctctccgcgagcgcgtctttcacttcagcgc 4636
>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529E05 Length = 134982 Score = 228 bits (115), Expect = 1e-56 Identities = 295/355 (83%) Strand = Plus / Plus Query: 1 tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60 |||||||||||||||| || |||| |||||| || || ||||| |||||||||||| || Sbjct: 115019 tgcccgacgccgacgtcccgaccaagctgaccaaggacctgttccccatggaccgcaccg 115078 Query: 61 tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120 | |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 115079 tgagctacgacggccaccgccgcccgctcacgtcgttccaggtcaccgtgctcggcgacg 115138 Query: 121 gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180 |||| || || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 115139 gcgccgtgttcatcggcatcgtcgcgaaccacgccgtggtggacgggacctccttttggc 115198 Query: 181 acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240 ||||||| || || ||||| | || ||||| |||| | || | ||| ||||||||| Sbjct: 115199 acttctttaatacatgggccgccctttgccgtggcgcgtcacccaagctgccggacttcc 115258 Query: 241 gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300 |||||| ||| ||||||| || || ||||||||||||||| | ||| ||| ||||| | Sbjct: 115259 gccgcagcttttttggcgagtcaaccgccgtcctccgctttccaggaggcgtgggccccg 115318 Query: 301 cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgc 355 | ||||| |||||||| | ||| || |||||||| || ||| | ||||||||||| Sbjct: 115319 ccgtgaccttcgacgcggacgcgcctctccgcgagcgcgtctttcacttcagcgc 115373
>dbj|AK070440.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050J22, full insert sequence Length = 2097 Score = 228 bits (115), Expect = 1e-56 Identities = 295/355 (83%) Strand = Plus / Plus Query: 1 tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60 |||||||||||||||| || |||| |||||| || || ||||| |||||||||||| || Sbjct: 557 tgcccgacgccgacgtcccgaccaagctgaccaaggacctgttccccatggaccgcaccg 616 Query: 61 tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120 | |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 617 tgagctacgacggccaccgccgcccgctcacgtcgttccaggtcaccgtgctcggcgacg 676 Query: 121 gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180 |||| || || ||||| ||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 677 gcgccgtgttcatcggcatcgtcgcgaaccacgccgtggtggacgggacctccttttggc 736 Query: 181 acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240 ||||||| || || ||||| | || ||||| |||| | || | ||| ||||||||| Sbjct: 737 acttctttaatacatgggccgccctttgccgtggcgcgtcacccaagctgccggacttcc 796 Query: 241 gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300 |||||| ||| ||||||| || || ||||||||||||||| | ||| ||| ||||| | Sbjct: 797 gccgcagcttttttggcgagtcaaccgccgtcctccgctttccaggaggcgtgggccccg 856 Query: 301 cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgc 355 | ||||| |||||||| | ||| || |||||||| || ||| | ||||||||||| Sbjct: 857 ccgtgaccttcgacgcggacgcgcctctccgcgagcgcgtctttcacttcagcgc 911
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 212 cggcgagccagtccagccaccgg 234 ||||||||||||||||||||||| Sbjct: 4239341 cggcgagccagtccagccaccgg 4239319
>ref|XM_389092.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08916.1) partial mRNA Length = 2361 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 tgtcggcctcgtcgccaacca 151 ||||||||||||||||||||| Sbjct: 1912 tgtcggcctcgtcgccaacca 1892
>gb|AC117401.3| Homo sapiens 3 BAC RP11-521J5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 197360 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 acacgtgggctgggctgtgcc 210 ||||||||||||||||||||| Sbjct: 57602 acacgtgggctgggctgtgcc 57622
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 377 ggcggcggccaaccgctgcag 397 ||||||||||||||||||||| Sbjct: 2008432 ggcggcggccaaccgctgcag 2008452
>ref|XM_520311.1| PREDICTED: Pan troglodytes similar to chromosome 9 open reading frame 78; hepatocellular carcinoma-associated antigen 59; match: proteins: Tr:Q9NT39 (LOC464793), mRNA Length = 1392 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 tgaaggtccaggggggtggc 464 |||||||||||||||||||| Sbjct: 182 tgaaggtccaggggggtggc 201
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 caggtcaccgtgctcggcga 118 |||||||||||||||||||| Sbjct: 1526700 caggtcaccgtgctcggcga 1526719
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 caggtcaccgtgctcggcga 118 |||||||||||||||||||| Sbjct: 4391146 caggtcaccgtgctcggcga 4391127
>ref|XM_447951.1| Candida glabrata CBS138, CAGL0J05654g partial mRNA Length = 4707 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 gaccaacgaggatgacgagg 420 |||||||||||||||||||| Sbjct: 1071 gaccaacgaggatgacgagg 1090
>gb|AC098883.3| Mus musculus BAC clone RP23-122F3 from 16, complete sequence Length = 211348 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 cgccgccgctcccctccgcg 333 |||||||||||||||||||| Sbjct: 7430 cgccgccgctcccctccgcg 7449
>gb|AC163628.5| Mus musculus BAC clone RP23-138F21 from chromosome 3, complete sequence Length = 194400 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 acctcattttggcacttctt 187 |||||||||||||||||||| Sbjct: 179224 acctcattttggcacttctt 179205
>emb|AL158207.15| Human DNA sequence from clone RP11-409K20 on chromosome 9 Contains the TOR1B gene for torsin family 1 member B (torsin B) (DQ1), the DYT1 gene for dystonia 1, torsion (autosomal dominant; torsin A) (DQ2, TOR1A), the gene for hepatocellular carcinoma-associated antigen 59 (HSPC220, LOC51759), the USP20 gene for ubiquitin specific protease 20 (KIAA1003), the 3' end of the FNBP1 gene for formin-binding protein 17 (FBP17), two novel genes, a 60S ribosomal protein L34 (RPL34) pseudogene and four CpG islands, complete sequence Length = 169963 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tgaaggtccaggggggtggc 464 |||||||||||||||||||| Sbjct: 37115 tgaaggtccaggggggtggc 37096
>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence Length = 1192501 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 gaccaacgaggatgacgagg 420 |||||||||||||||||||| Sbjct: 539656 gaccaacgaggatgacgagg 539675
>emb|BX927152.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 5/10 Length = 349799 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gcggcgagccagtccagcca 230 |||||||||||||||||||| Sbjct: 229455 gcggcgagccagtccagcca 229436
>gb|AC136297.6| Homo sapiens chromosome 11, clone CTD-2245O6, complete sequence Length = 185908 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 gacgccgccgctcccctccg 331 |||||||||||||||||||| Sbjct: 142335 gacgccgccgctcccctccg 142316
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gcggcgagccagtccagcca 230 |||||||||||||||||||| Sbjct: 1623680 gcggcgagccagtccagcca 1623661
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 gctacgaaggccaccgccgc 83 |||||||||||||||||||| Sbjct: 1320734 gctacgaaggccaccgccgc 1320753
>gb|AC061979.17| Homo sapiens chromosome 11, clone RP11-532E4, complete sequence Length = 124104 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 gacgccgccgctcccctccg 331 |||||||||||||||||||| Sbjct: 97152 gacgccgccgctcccctccg 97171
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 100 aggtcaccgtgctcggcgacggcg 123 |||||||||||||||||| ||||| Sbjct: 256497 aggtcaccgtgctcggcggcggcg 256474
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 113 cggcgacggcgctgtctttgtcggcctcgtcg 144 ||||||||||||||| | |||||||| ||||| Sbjct: 1280482 cggcgacggcgctgtatctgtcggccacgtcg 1280451
>gb|AC079682.29| Mus musculus strain C57BL/6J chromosome 3 clone rp23-463h24, complete sequence Length = 181082 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 acctcattttggcacttctt 187 |||||||||||||||||||| Sbjct: 113466 acctcattttggcacttctt 113485
>gb|AC130844.3| Mus musculus BAC clone RP24-529I3 from 16, complete sequence Length = 168387 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 cgccgccgctcccctccgcg 333 |||||||||||||||||||| Sbjct: 150774 cgccgccgctcccctccgcg 150793
>gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromosome unknown, complete sequence Length = 228603 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cgccgccgctcccctccgcg 333 |||||||||||||||||||| Sbjct: 31196 cgccgccgctcccctccgcg 31177 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,802,172 Number of Sequences: 3902068 Number of extensions: 2802172 Number of successful extensions: 53456 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52639 Number of HSP's gapped (non-prelim): 813 length of query: 470 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 448 effective length of database: 17,147,199,772 effective search space: 7681945497856 effective search space used: 7681945497856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)