ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast03d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome... 339 5e-90
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 339 5e-90
3dbj|AK107567.1| Oryza sativa (japonica cultivar-group) cDNA clon... 339 5e-90
4dbj|AK072009.1| Oryza sativa (japonica cultivar-group) cDNA clon... 323 3e-85
5ref|NM_190656.1| Oryza sativa (japonica cultivar-group), predic... 228 1e-56
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 228 1e-56
7dbj|AP003442.2| Oryza sativa (japonica cultivar-group) genomic D... 228 1e-56
8dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic D... 228 1e-56
9dbj|AK070440.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 1e-56
10dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 46 0.10
11ref|XM_389092.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 42 1.6
12gb|AC117401.3| Homo sapiens 3 BAC RP11-521J5 (Roswell Park Cance... 42 1.6
13dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 42 1.6
14ref|XM_520311.1| PREDICTED: Pan troglodytes similar to chromosom... 40 6.3
15gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.3
16gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 6.3
17ref|XM_447951.1| Candida glabrata CBS138, CAGL0J05654g partial mRNA 40 6.3
18gb|AC098883.3| Mus musculus BAC clone RP23-122F3 from 16, comple... 40 6.3
19gb|AC163628.5| Mus musculus BAC clone RP23-138F21 from chromosom... 40 6.3
20emb|AL158207.15| Human DNA sequence from clone RP11-409K20 on ch... 40 6.3
21emb|CR380956.1| Candida glabrata strain CBS138 chromosome J comp... 40 6.3
22emb|BX927152.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 6.3
23gb|AC136297.6| Homo sapiens chromosome 11, clone CTD-2245O6, com... 40 6.3
24dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 6.3
25gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 6.3
26gb|AC061979.17| Homo sapiens chromosome 11, clone RP11-532E4, co... 40 6.3
27dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 6.3
28emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 6.3
29gb|AC079682.29| Mus musculus strain C57BL/6J chromosome 3 clone ... 40 6.3
30gb|AC130844.3| Mus musculus BAC clone RP24-529I3 from 16, comple... 40 6.3
31gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromoso... 40 6.3

>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01,
             complete sequence
          Length = 126532

 Score =  339 bits (171), Expect = 5e-90
 Identities = 327/379 (86%)
 Strand = Plus / Minus

                                                                         
Query: 1     tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60
             ||||| ||||||||||||| |||||||||||||| ||| |||| ||||||||||||  ||
Sbjct: 15528 tgcccaacgccgacgtgccgaccaggctgacgaaggatttgttccccatggaccgcaccg 15469

                                                                         
Query: 61    tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120
             | |||||||| ||||||||||| |||||||| ||||| ||| |||||||||||||||| |
Sbjct: 15468 tgagctacgacggccaccgccgtccgctcacctcgttccagctcaccgtgctcggcgatg 15409

                                                                         
Query: 121   gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180
             | |||||||| |||||| ||||||| |||||||||||||||||||||||||| || ||||
Sbjct: 15408 gagctgtcttcgtcggcttcgtcgctaaccacgccgtcgtggacggcacctccttctggc 15349

                                                                         
Query: 181   acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240
             ||||||| ||||||||||| || || |||||||||  ||| |||||||| ||||||||  
Sbjct: 15348 acttctttaacacgtgggcaggtctctgccgcggcacgccggtccagccgccggacttgc 15289

                                                                         
Query: 241   gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300
             |||| ||||||||||||| ||||||||||||| |||||||  ||||  |||  || ||||
Sbjct: 15288 gccggaacttctttggcgactccacggccgtcatccgcttccccggtggcgcgggtcctg 15229

                                                                         
Query: 301   cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgctgcgg 360
             | || || |||||||||| ||| ||||||||||| |||||| |||| |||||||| || |
Sbjct: 15228 ccgtcaccttcgacgccgacgcgcccctccgcgagcgagtcctccatttcagcgccgccg 15169

                                
Query: 361   caattcgcgacctgaaggc 379
             | |||||||| ||||||||
Sbjct: 15168 ccattcgcgagctgaaggc 15150



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  339 bits (171), Expect = 5e-90
 Identities = 327/379 (86%)
 Strand = Plus / Minus

                                                                            
Query: 1        tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60
                ||||| ||||||||||||| |||||||||||||| ||| |||| ||||||||||||  ||
Sbjct: 21896314 tgcccaacgccgacgtgccgaccaggctgacgaaggatttgttccccatggaccgcaccg 21896255

                                                                            
Query: 61       tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120
                | |||||||| ||||||||||| |||||||| ||||| ||| |||||||||||||||| |
Sbjct: 21896254 tgagctacgacggccaccgccgtccgctcacctcgttccagctcaccgtgctcggcgatg 21896195

                                                                            
Query: 121      gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180
                | |||||||| |||||| ||||||| |||||||||||||||||||||||||| || ||||
Sbjct: 21896194 gagctgtcttcgtcggcttcgtcgctaaccacgccgtcgtggacggcacctccttctggc 21896135

                                                                            
Query: 181      acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240
                ||||||| ||||||||||| || || |||||||||  ||| |||||||| ||||||||  
Sbjct: 21896134 acttctttaacacgtgggcaggtctctgccgcggcacgccggtccagccgccggacttgc 21896075

                                                                            
Query: 241      gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300
                |||| ||||||||||||| ||||||||||||| |||||||  ||||  |||  || ||||
Sbjct: 21896074 gccggaacttctttggcgactccacggccgtcatccgcttccccggtggcgcgggtcctg 21896015

                                                                            
Query: 301      cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgctgcgg 360
                | || || |||||||||| ||| ||||||||||| |||||| |||| |||||||| || |
Sbjct: 21896014 ccgtcaccttcgacgccgacgcgcccctccgcgagcgagtcctccatttcagcgccgccg 21895955

                                   
Query: 361      caattcgcgacctgaaggc 379
                | |||||||| ||||||||
Sbjct: 21895954 ccattcgcgagctgaaggc 21895936



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>dbj|AK107567.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-C10, full
           insert sequence
          Length = 1886

 Score =  339 bits (171), Expect = 5e-90
 Identities = 327/379 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60
           ||||| ||||||||||||| |||||||||||||| ||| |||| ||||||||||||  ||
Sbjct: 504 tgcccaacgccgacgtgccgaccaggctgacgaaggatttgttccccatggaccgcaccg 563

                                                                       
Query: 61  tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120
           | |||||||| ||||||||||| |||||||| ||||| ||| |||||||||||||||| |
Sbjct: 564 tgagctacgacggccaccgccgtccgctcacctcgttccagctcaccgtgctcggcgatg 623

                                                                       
Query: 121 gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180
           | |||||||| |||||| ||||||| |||||||||||||||||||||||||| || ||||
Sbjct: 624 gagctgtcttcgtcggcttcgtcgctaaccacgccgtcgtggacggcacctccttctggc 683

                                                                       
Query: 181 acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240
           ||||||| ||||||||||| || || |||||||||  ||| |||||||| ||||||||  
Sbjct: 684 acttctttaacacgtgggcaggtctctgccgcggcacgccggtccagccgccggacttgc 743

                                                                       
Query: 241 gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300
           |||| ||||||||||||| ||||||||||||| |||||||  ||||  |||  || ||||
Sbjct: 744 gccggaacttctttggcgactccacggccgtcatccgcttccccggtggcgcgggtcctg 803

                                                                       
Query: 301 cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgctgcgg 360
           | || || |||||||||| ||| ||||||||||| |||||| |||| |||||||| || |
Sbjct: 804 ccgtcaccttcgacgccgacgcgcccctccgcgagcgagtcctccatttcagcgccgccg 863

                              
Query: 361 caattcgcgacctgaaggc 379
           | |||||||| ||||||||
Sbjct: 864 ccattcgcgagctgaaggc 882



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>dbj|AK072009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104O15, full
           insert sequence
          Length = 1883

 Score =  323 bits (163), Expect = 3e-85
 Identities = 325/379 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60
           ||||| ||||||||||||| |||||||||||||| ||| |||| ||||||||||||  ||
Sbjct: 505 tgcccaacgccgacgtgccgaccaggctgacgaaggatttgttccccatggaccgcaccg 564

                                                                       
Query: 61  tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120
           | |||||||| ||||||||||| |||||||| ||||| ||| |||||||||||||||| |
Sbjct: 565 tgagctacgacggccaccgccgtccgctcacctcgttccagctcaccgtgctcggcgatg 624

                                                                       
Query: 121 gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180
           | |||||||| |||||| ||||||| |||||||||||||||| ||||||||| || ||||
Sbjct: 625 gagctgtcttcgtcggcttcgtcgctaaccacgccgtcgtgggcggcacctccttctggc 684

                                                                       
Query: 181 acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240
           ||||||| ||||||||||| || || |||||||||  ||| |||||||| |||| |||  
Sbjct: 685 acttctttaacacgtgggcaggtctctgccgcggcacgccggtccagccgccgggcttgc 744

                                                                       
Query: 241 gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300
           |||| ||||||||||||| ||||||||||||| |||||||  ||||  |||  || ||||
Sbjct: 745 gccggaacttctttggcgactccacggccgtcatccgcttccccggtggcgcgggtcctg 804

                                                                       
Query: 301 cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgctgcgg 360
           | || || |||||||||| ||| ||||||||||| |||||| |||| |||||||| || |
Sbjct: 805 ccgtcaccttcgacgccgacgcgcccctccgcgagcgagtcctccatttcagcgccgccg 864

                              
Query: 361 caattcgcgacctgaaggc 379
           | |||||||| ||||||||
Sbjct: 865 ccattcgcgagctgaaggc 883



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>ref|NM_190656.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2139

 Score =  228 bits (115), Expect = 1e-56
 Identities = 295/355 (83%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60
           |||||||||||||||| || |||| |||||| || || ||||| ||||||||||||  ||
Sbjct: 422 tgcccgacgccgacgtcccgaccaagctgaccaaggacctgttccccatggaccgcaccg 481

                                                                       
Query: 61  tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120
           | |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 482 tgagctacgacggccaccgccgcccgctcacgtcgttccaggtcaccgtgctcggcgacg 541

                                                                       
Query: 121 gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180
           |||| || ||  ||||| ||||||| ||||||||||| |||||||| ||||| |||||||
Sbjct: 542 gcgccgtgttcatcggcatcgtcgcgaaccacgccgtggtggacgggacctccttttggc 601

                                                                       
Query: 181 acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240
           ||||||| || || ||||| |  || ||||| |||| | ||  | |||  ||||||||| 
Sbjct: 602 acttctttaatacatgggccgccctttgccgtggcgcgtcacccaagctgccggacttcc 661

                                                                       
Query: 241 gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300
           |||||| ||| |||||||  || || ||||||||||||||| | ||| |||  ||||| |
Sbjct: 662 gccgcagcttttttggcgagtcaaccgccgtcctccgctttccaggaggcgtgggccccg 721

                                                                  
Query: 301 cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgc 355
           | ||||| |||||||| | ||| || |||||||| || ||| | |||||||||||
Sbjct: 722 ccgtgaccttcgacgcggacgcgcctctccgcgagcgcgtctttcacttcagcgc 776



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  228 bits (115), Expect = 1e-56
 Identities = 295/355 (83%)
 Strand = Plus / Plus

                                                                            
Query: 1        tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60
                |||||||||||||||| || |||| |||||| || || ||||| ||||||||||||  ||
Sbjct: 36788704 tgcccgacgccgacgtcccgaccaagctgaccaaggacctgttccccatggaccgcaccg 36788763

                                                                            
Query: 61       tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120
                | |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 36788764 tgagctacgacggccaccgccgcccgctcacgtcgttccaggtcaccgtgctcggcgacg 36788823

                                                                            
Query: 121      gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180
                |||| || ||  ||||| ||||||| ||||||||||| |||||||| ||||| |||||||
Sbjct: 36788824 gcgccgtgttcatcggcatcgtcgcgaaccacgccgtggtggacgggacctccttttggc 36788883

                                                                            
Query: 181      acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240
                ||||||| || || ||||| |  || ||||| |||| | ||  | |||  ||||||||| 
Sbjct: 36788884 acttctttaatacatgggccgccctttgccgtggcgcgtcacccaagctgccggacttcc 36788943

                                                                            
Query: 241      gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300
                |||||| ||| |||||||  || || ||||||||||||||| | ||| |||  ||||| |
Sbjct: 36788944 gccgcagcttttttggcgagtcaaccgccgtcctccgctttccaggaggcgtgggccccg 36789003

                                                                       
Query: 301      cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgc 355
                | ||||| |||||||| | ||| || |||||||| || ||| | |||||||||||
Sbjct: 36789004 ccgtgaccttcgacgcggacgcgcctctccgcgagcgcgtctttcacttcagcgc 36789058



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>dbj|AP003442.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1096A10
          Length = 150976

 Score =  228 bits (115), Expect = 1e-56
 Identities = 295/355 (83%)
 Strand = Plus / Plus

                                                                        
Query: 1    tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60
            |||||||||||||||| || |||| |||||| || || ||||| ||||||||||||  ||
Sbjct: 4282 tgcccgacgccgacgtcccgaccaagctgaccaaggacctgttccccatggaccgcaccg 4341

                                                                        
Query: 61   tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120
            | |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 4342 tgagctacgacggccaccgccgcccgctcacgtcgttccaggtcaccgtgctcggcgacg 4401

                                                                        
Query: 121  gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180
            |||| || ||  ||||| ||||||| ||||||||||| |||||||| ||||| |||||||
Sbjct: 4402 gcgccgtgttcatcggcatcgtcgcgaaccacgccgtggtggacgggacctccttttggc 4461

                                                                        
Query: 181  acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240
            ||||||| || || ||||| |  || ||||| |||| | ||  | |||  ||||||||| 
Sbjct: 4462 acttctttaatacatgggccgccctttgccgtggcgcgtcacccaagctgccggacttcc 4521

                                                                        
Query: 241  gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300
            |||||| ||| |||||||  || || ||||||||||||||| | ||| |||  ||||| |
Sbjct: 4522 gccgcagcttttttggcgagtcaaccgccgtcctccgctttccaggaggcgtgggccccg 4581

                                                                   
Query: 301  cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgc 355
            | ||||| |||||||| | ||| || |||||||| || ||| | |||||||||||
Sbjct: 4582 ccgtgaccttcgacgcggacgcgcctctccgcgagcgcgtctttcacttcagcgc 4636



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>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0529E05
          Length = 134982

 Score =  228 bits (115), Expect = 1e-56
 Identities = 295/355 (83%)
 Strand = Plus / Plus

                                                                          
Query: 1      tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60
              |||||||||||||||| || |||| |||||| || || ||||| ||||||||||||  ||
Sbjct: 115019 tgcccgacgccgacgtcccgaccaagctgaccaaggacctgttccccatggaccgcaccg 115078

                                                                          
Query: 61     tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120
              | |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 115079 tgagctacgacggccaccgccgcccgctcacgtcgttccaggtcaccgtgctcggcgacg 115138

                                                                          
Query: 121    gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180
              |||| || ||  ||||| ||||||| ||||||||||| |||||||| ||||| |||||||
Sbjct: 115139 gcgccgtgttcatcggcatcgtcgcgaaccacgccgtggtggacgggacctccttttggc 115198

                                                                          
Query: 181    acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240
              ||||||| || || ||||| |  || ||||| |||| | ||  | |||  ||||||||| 
Sbjct: 115199 acttctttaatacatgggccgccctttgccgtggcgcgtcacccaagctgccggacttcc 115258

                                                                          
Query: 241    gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300
              |||||| ||| |||||||  || || ||||||||||||||| | ||| |||  ||||| |
Sbjct: 115259 gccgcagcttttttggcgagtcaaccgccgtcctccgctttccaggaggcgtgggccccg 115318

                                                                     
Query: 301    cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgc 355
              | ||||| |||||||| | ||| || |||||||| || ||| | |||||||||||
Sbjct: 115319 ccgtgaccttcgacgcggacgcgcctctccgcgagcgcgtctttcacttcagcgc 115373



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>dbj|AK070440.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050J22, full
           insert sequence
          Length = 2097

 Score =  228 bits (115), Expect = 1e-56
 Identities = 295/355 (83%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcccgacgccgacgtgcctaccaggctgacgaaagatctgtttcccatggaccgcgtcg 60
           |||||||||||||||| || |||| |||||| || || ||||| ||||||||||||  ||
Sbjct: 557 tgcccgacgccgacgtcccgaccaagctgaccaaggacctgttccccatggaccgcaccg 616

                                                                       
Query: 61  tcagctacgaaggccaccgccgcccgctcacatcgtttcaggtcaccgtgctcggcgacg 120
           | |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 617 tgagctacgacggccaccgccgcccgctcacgtcgttccaggtcaccgtgctcggcgacg 676

                                                                       
Query: 121 gcgctgtctttgtcggcctcgtcgccaaccacgccgtcgtggacggcacctcattttggc 180
           |||| || ||  ||||| ||||||| ||||||||||| |||||||| ||||| |||||||
Sbjct: 677 gcgccgtgttcatcggcatcgtcgcgaaccacgccgtggtggacgggacctccttttggc 736

                                                                       
Query: 181 acttcttcaacacgtgggctgggctgtgccgcggcgagccagtccagccaccggacttca 240
           ||||||| || || ||||| |  || ||||| |||| | ||  | |||  ||||||||| 
Sbjct: 737 acttctttaatacatgggccgccctttgccgtggcgcgtcacccaagctgccggacttcc 796

                                                                       
Query: 241 gccgcaacttctttggcggctccacggccgtcctccgcttttccggacgcgacggccctg 300
           |||||| ||| |||||||  || || ||||||||||||||| | ||| |||  ||||| |
Sbjct: 797 gccgcagcttttttggcgagtcaaccgccgtcctccgctttccaggaggcgtgggccccg 856

                                                                  
Query: 301 cagtgacgttcgacgccgccgctcccctccgcgaacgagtcatccacttcagcgc 355
           | ||||| |||||||| | ||| || |||||||| || ||| | |||||||||||
Sbjct: 857 ccgtgaccttcgacgcggacgcgcctctccgcgagcgcgtctttcacttcagcgc 911



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 212     cggcgagccagtccagccaccgg 234
               |||||||||||||||||||||||
Sbjct: 4239341 cggcgagccagtccagccaccgg 4239319



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>ref|XM_389092.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08916.1)
            partial mRNA
          Length = 2361

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 131  tgtcggcctcgtcgccaacca 151
            |||||||||||||||||||||
Sbjct: 1912 tgtcggcctcgtcgccaacca 1892



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>gb|AC117401.3| Homo sapiens 3 BAC RP11-521J5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 197360

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 190   acacgtgggctgggctgtgcc 210
             |||||||||||||||||||||
Sbjct: 57602 acacgtgggctgggctgtgcc 57622



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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 377     ggcggcggccaaccgctgcag 397
               |||||||||||||||||||||
Sbjct: 2008432 ggcggcggccaaccgctgcag 2008452



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>ref|XM_520311.1| PREDICTED: Pan troglodytes similar to chromosome 9 open reading
           frame 78; hepatocellular carcinoma-associated antigen
           59; match: proteins: Tr:Q9NT39 (LOC464793), mRNA
          Length = 1392

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 445 tgaaggtccaggggggtggc 464
           ||||||||||||||||||||
Sbjct: 182 tgaaggtccaggggggtggc 201



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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 99      caggtcaccgtgctcggcga 118
               ||||||||||||||||||||
Sbjct: 1526700 caggtcaccgtgctcggcga 1526719



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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 99      caggtcaccgtgctcggcga 118
               ||||||||||||||||||||
Sbjct: 4391146 caggtcaccgtgctcggcga 4391127



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>ref|XM_447951.1| Candida glabrata CBS138, CAGL0J05654g partial mRNA
          Length = 4707

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 401  gaccaacgaggatgacgagg 420
            ||||||||||||||||||||
Sbjct: 1071 gaccaacgaggatgacgagg 1090



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>gb|AC098883.3| Mus musculus BAC clone RP23-122F3 from 16, complete sequence
          Length = 211348

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  cgccgccgctcccctccgcg 333
            ||||||||||||||||||||
Sbjct: 7430 cgccgccgctcccctccgcg 7449



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>gb|AC163628.5| Mus musculus BAC clone RP23-138F21 from chromosome 3, complete sequence
          Length = 194400

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    acctcattttggcacttctt 187
              ||||||||||||||||||||
Sbjct: 179224 acctcattttggcacttctt 179205



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>emb|AL158207.15| Human DNA sequence from clone RP11-409K20 on chromosome 9 Contains the
             TOR1B gene for torsin family 1 member B (torsin B) (DQ1),
             the DYT1 gene for dystonia 1, torsion (autosomal dominant;
             torsin A) (DQ2, TOR1A), the gene for hepatocellular
             carcinoma-associated antigen 59 (HSPC220, LOC51759), the
             USP20 gene for ubiquitin specific protease 20 (KIAA1003),
             the 3' end of the FNBP1 gene for formin-binding protein 17
             (FBP17), two novel genes, a 60S ribosomal protein L34
             (RPL34) pseudogene and four CpG islands, complete sequence
          Length = 169963

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 445   tgaaggtccaggggggtggc 464
             ||||||||||||||||||||
Sbjct: 37115 tgaaggtccaggggggtggc 37096



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>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence
          Length = 1192501

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 401    gaccaacgaggatgacgagg 420
              ||||||||||||||||||||
Sbjct: 539656 gaccaacgaggatgacgagg 539675



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>emb|BX927152.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 5/10
          Length = 349799

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    gcggcgagccagtccagcca 230
              ||||||||||||||||||||
Sbjct: 229455 gcggcgagccagtccagcca 229436



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>gb|AC136297.6| Homo sapiens chromosome 11, clone CTD-2245O6, complete sequence
          Length = 185908

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    gacgccgccgctcccctccg 331
              ||||||||||||||||||||
Sbjct: 142335 gacgccgccgctcccctccg 142316



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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 211     gcggcgagccagtccagcca 230
               ||||||||||||||||||||
Sbjct: 1623680 gcggcgagccagtccagcca 1623661



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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 64      gctacgaaggccaccgccgc 83
               ||||||||||||||||||||
Sbjct: 1320734 gctacgaaggccaccgccgc 1320753



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>gb|AC061979.17| Homo sapiens chromosome 11, clone RP11-532E4, complete sequence
          Length = 124104

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   gacgccgccgctcccctccg 331
             ||||||||||||||||||||
Sbjct: 97152 gacgccgccgctcccctccg 97171



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 100    aggtcaccgtgctcggcgacggcg 123
              |||||||||||||||||| |||||
Sbjct: 256497 aggtcaccgtgctcggcggcggcg 256474



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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 113     cggcgacggcgctgtctttgtcggcctcgtcg 144
               ||||||||||||||| | |||||||| |||||
Sbjct: 1280482 cggcgacggcgctgtatctgtcggccacgtcg 1280451



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>gb|AC079682.29| Mus musculus strain C57BL/6J chromosome 3 clone rp23-463h24, complete
              sequence
          Length = 181082

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    acctcattttggcacttctt 187
              ||||||||||||||||||||
Sbjct: 113466 acctcattttggcacttctt 113485



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>gb|AC130844.3| Mus musculus BAC clone RP24-529I3 from 16, complete sequence
          Length = 168387

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    cgccgccgctcccctccgcg 333
              ||||||||||||||||||||
Sbjct: 150774 cgccgccgctcccctccgcg 150793



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>gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromosome unknown, complete
             sequence
          Length = 228603

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 314   cgccgccgctcccctccgcg 333
             ||||||||||||||||||||
Sbjct: 31196 cgccgccgctcccctccgcg 31177


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,802,172
Number of Sequences: 3902068
Number of extensions: 2802172
Number of successful extensions: 53456
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52639
Number of HSP's gapped (non-prelim): 813
length of query: 470
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 448
effective length of database: 17,147,199,772
effective search space: 7681945497856
effective search space used: 7681945497856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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