>SUR2_CAEEL (Q10669) Protein sur-2|
          Length = 1587

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
 Frame = +2

Query: 236  HALQHH---RQGRRGHAGLRARQQGHRPRRQALHRPVP---------PREAGAVQPGVRG 379
            H LQHH    Q          +QQ + P +Q L   +P         P+  GAV     G
Sbjct: 1450 HHLQHHTSTHQMMDTSQHQTIQQQSNHPTQQQLQHQIPNMSMHQQMGPQYPGAVFHHPSG 1509

Query: 380  RVGAVDGEQGRGQGLXLHPH 439
             VG V  + G G  +  HPH
Sbjct: 1510 PVGHVPMQYGMGHHMQQHPH 1529

>RLUB_XANCP (Q8P8M6) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 492

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +2

Query: 329 RPVPPREAGAVQPGV----RGRVGAVDGEQGRGQGLXLHPHG 442
           RP   +  G  +PG     RG  G     QG+GQG   HP+G
Sbjct: 414 RPYAKKGPGGARPGAGGQGRGAAGGQGQSQGQGQGQRKHPYG 455

>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 24/86 (27%)
 Frame = +2

Query: 230 QGHALQH---------HRQG------RRGHAGLRARQQGHRPRRQA-LHRPVPPREAGAV 361
           +GHA +H         HR G       RGH     RQQGH P      HR     E G  
Sbjct: 590 EGHAEEHQTEVPGHHQHRMGDTDTSAERGHPASSPRQQGHPPEDTVHHHRGSLKEEVGPE 649

Query: 362 QPGVRG--------RVGAVDGEQGRG 415
            PG  G        R G+ + E+ +G
Sbjct: 650 SPGPAGVKDGSRVKRGGSEEEEEQKG 675

>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
 Frame = +2

Query: 329 RPVPPREAGAVQPGVRGRVGAVDGEQGR----------GQGLXLHPHG 442
           RP   +  G  +PG  G VGA  G  GR          GQG   HP+G
Sbjct: 414 RPYAKKGPGGARPGTGGPVGARSGGPGRGAGGGQGQSQGQGQRKHPYG 461

>L2MU_ADE02 (P14269) Late L2 mu core protein precursor (pMu) (Protein X) (pX)|
           (11 kDa core protein)
          Length = 79

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 248 HHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQPGVRGRVGAVDG 400
           H R+G  GH      ++ H  RR+A HR +       + P +   +GAV G
Sbjct: 18  HRRRGMAGHGLTGGMRRAHHRRRRASHRRMRGGILPLLIPLIAAAIGAVPG 68

>RIMB1_MOUSE (Q7TNF8) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (Peripheral benzodiazepine receptor-interacting
            protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1)
          Length = 1846

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 317  QALHRPVPPREAGAVQPGVRG-RVGAVDGEQGR 412
            QA  RPVPPRE G++ P + G RVG   G +GR
Sbjct: 1429 QASARPVPPRERGSL-PVIEGTRVGQEPGGRGR 1460

>GALT6_BOVIN (Q5EA41) Polypeptide N-acetylgalactosaminyltransferase 6 (EC|
           2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase
           6) (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc
           transferase 6) (GalNAc-T6) (pp-GaNTase 6)
          Length = 622

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 159 CLAVRDGEVVLAPVNPKDETQHWL 230
           CL  +D + V+A  NP D  QHWL
Sbjct: 597 CLTSKDKKPVMATCNPSDPHQHWL 620

>CUTI2_ASPOR (Q2TZY7) Probable cutinase 2 precursor (EC 3.1.1.74) (Cutin|
           hydrolase 2)
          Length = 221

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
 Frame = +3

Query: 36  IRHALLAAKMFGFGHHHKDQAPAASGPNQIFKIYCRASEDYCLAVRDGEVVLAPV----- 200
           ++  +    +FG+  + ++    A+ P    K+YC   +  C    DG +++ P      
Sbjct: 143 VKEKIKGVVLFGYTRNAQEHGQIANFPKDKVKVYCAVGDMVC----DGTLIVGPAHFTYL 198

Query: 201 -NPKDETQHWLKDMRF 245
            N  + TQ  L  +RF
Sbjct: 199 GNTGEATQFLLGYLRF 214

>AFSK_STRGR (P54742) Serine/threonine protein kinase afsK (EC 2.7.11.1)|
          Length = 807

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 44  RSPRRQDVRVRAPPQGPGAG 103
           R PR +  R+RA PQGPGAG
Sbjct: 305 RPPRPRPRRLRAAPQGPGAG 324

>PLSX_DEIRA (Q46578) Fatty acid/phospholipid synthesis protein plsX|
          Length = 360

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +2

Query: 242 LQHHRQGRRGHAGLRARQQGHRPRRQ---ALHRPVPPREAG-AVQPGVRGRVG 388
           L+     R   AGL   +Q  RPRRQ   A  RP P   AG A   GVRG  G
Sbjct: 298 LRREHLDRGAGAGLYRPRQRRRPRRQKRRAACRPRPRSAAGRAPGSGVRGAAG 350

>NBEA_DROME (Q9W4E2) Protein neurobeachin (Protein rugose) (A-kinase anchor|
            protein 550) (AKAP 550) (dAKAP550)
          Length = 3584

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +2

Query: 224  LAQGHALQHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQ-PGVRGRVGAVDG 400
            ++  H   HH Q ++  AG+  +QQ H     +     P  E   V+ P   G  G+  G
Sbjct: 2405 ISDKHDPSHHNQQQQQQAGIIGQQQQHGSLGHSERGDKPDSEISVVRVPDGYGGAGSGGG 2464

Query: 401  -EQGRGQGL 424
               G+GQG+
Sbjct: 2465 VNSGQGQGV 2473

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +2

Query: 233  GHALQHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQPGVRGR 382
            G      R+  RG    R + + HRP     H   P R  G V PGV  R
Sbjct: 2197 GDLPSREREQERG----RPKDRKHRPHHHHHHHHHPGRGPGRVSPGVSAR 2242

>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 3)
          Length = 437

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 21/57 (36%), Positives = 23/57 (40%)
 Frame = +2

Query: 233 GHALQHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAVQPGVRGRVGAVDGE 403
           GH   HH +GRRG    R R QG    R            GA  P VR R+    GE
Sbjct: 230 GHGDGHHLEGRRG----RPRPQGREAGR------------GAHPPQVRARIYLAAGE 270



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 22/49 (44%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +2

Query: 245 QHHRQGRRGHAGLRARQQGHRPRRQALHRPVPPREAGAV---QPGVRGR 382
           Q H+  R  HA  R  Q G  PRRQ L     PR AG     QP  RGR
Sbjct: 134 QQHQHPRGRHASDRV-QDGAHPRRQRLRE--QPRHAGRPRRRQPPRRGR 179

>PROA_SERMA (P17857) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)|
           (Glutamate-5-semialdehyde dehydrogenase)
           (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA
           dehydrogenase)
          Length = 417

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 3/111 (2%)
 Frame = +3

Query: 99  PAASGPNQIFKIYCRASEDYCLAVRDGEVVLAPVNPKDETQHWLK-DMRFSTTVKDEEGM 275
           PA S       +   A+E+    ++ G   + PVN +D    WL  D+        ++ +
Sbjct: 271 PALSAKMAAAGVTLHAAENALPLLQGGPATVVPVNAEDYDDEWLSLDLNVLLVDDIDQAI 330

Query: 276 PAFAL--VNKATGLAVKHSIGQSHPVKLVPFNPAYEDASVLWTESKDVGKG 422
                   N +  +  +      H V+ V  +  Y +AS  +T+    G G
Sbjct: 331 DHIRTHGTNHSDAILTRSLSSAEHFVRAVDSSAVYVNASTRFTDGGQFGLG 381

>YLS6_CAEEL (P34391) Putative cuticle collagen F09G8.6|
          Length = 278

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 284 RARQQGHRPRRQALHRPVPPREAGAVQPGVRGRVG--AVDGEQG 409
           RAR+Q   P  QAL +  PP   G   PG  G  G   VDG+ G
Sbjct: 71  RARRQAALPDCQALAKNCPPGPPG--PPGAPGAAGEPGVDGDAG 112

>GALT6_MOUSE (Q8C7U7) Polypeptide N-acetylgalactosaminyltransferase 6 (EC|
           2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase
           6) (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc
           transferase 6) (GalNAc-T6) (pp-GaNTase 6)
          Length = 622

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 159 CLAVRDGEVVLAPVNPKDETQHWL 230
           CL  +D +  +AP NP+D  Q WL
Sbjct: 597 CLTSQDKKPAMAPCNPRDPYQLWL 620


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.123    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,975,919
Number of Sequences: 219361
Number of extensions: 935540
Number of successful extensions: 4111
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4106
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)