ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast02h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1472_HAEIN (P44206) Protein HI1472 precursor 28 7.2
2GP1BA_HUMAN (P07359) Platelet glycoprotein Ib alpha chain precur... 28 7.2
3CCNT_DROME (O96433) Cyclin-T 28 9.4
4AIM1_HUMAN (Q9Y4K1) Absent in melanoma 1 protein 28 9.4

>Y1472_HAEIN (P44206) Protein HI1472 precursor|
          Length = 351

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 176 ALLTACLVFPLSFAVLAHSLFTHPILRRIRTSDY 277
           +LL ACL+  LSF+ LA  + T  + R++   D+
Sbjct: 5   SLLIACLLSSLSFSALADRIITDQLDRKVTIPDH 38



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>GP1BA_HUMAN (P07359) Platelet glycoprotein Ib alpha chain precursor|
           (Glycoprotein Ibalpha) (GP-Ib alpha) (GPIbA)
           (GPIb-alpha) (Antigen CD42b-alpha) (CD42b antigen)
           [Contains: Glycocalicin]
          Length = 626

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 2   PHPTTPRRSSGESKSNRSPDPPSLPTTMELATRDLAALGAGDLV 133
           P PTTP  +S  + S  +P+P  +PT   +AT     + A  L+
Sbjct: 406 PSPTTPEPTSEPAPSPTTPEPTPIPT---IATSPTILVSATSLI 446



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>CCNT_DROME (O96433) Cyclin-T|
          Length = 1097

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 20  RRSSGESKSNRSPDPPSLPTTMELATRDLAALGAG 124
           R SS  S S++ P  PS+P     ++R +  +G G
Sbjct: 440 RSSSSSSSSSQQPGRPSMPVDYHKSSRGMPPVGVG 474



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>AIM1_HUMAN (Q9Y4K1) Absent in melanoma 1 protein|
          Length = 1723

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 2   PHPTTPRRSSGESKSNRSPDPPSLPTTMELATRDLAALGA 121
           P P T  +  GES  ++ P P S PT  +  +R L A+ A
Sbjct: 80  PSPGTKGQLRGESDRSKQPPPASSPTKRKGRSRALEAVPA 119


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,223,948
Number of Sequences: 219361
Number of extensions: 363553
Number of successful extensions: 1611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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