ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast02h01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187658.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 855 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Plus Query: 216 atgctgccgtacgcgacgaccggcgatgcggaggcggcgctcggccgcgccctgacgtgg 275 ||||| |||||||||||| | | || |||||||||||| | || || | |||||||||| Sbjct: 1 atgctcccgtacgcgacggcggcggaggcggaggcggcggtggggcggggcctgacgtgg 60 Query: 276 gcggaggccgcgtggctccgctactcggcg 305 |||||||| || ||| |||||||||||||| Sbjct: 61 gcggaggcggcctggttccgctactcggcg 90
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 216 atgctgccgtacgcgacgaccggcgatgcggaggcggcgctcggccgcgccctgacgtgg 275 ||||| |||||||||||| | | || |||||||||||| | || || | |||||||||| Sbjct: 480074 atgctcccgtacgcgacggcggcggaggcggaggcggcggtggggcggggcctgacgtgg 480015 Query: 276 gcggaggccgcgtggctccgctactcggcg 305 |||||||| || ||| |||||||||||||| Sbjct: 480014 gcggaggcggcctggttccgctactcggcg 479985 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Plus Query: 392 cgacctcgccgccccggccgtcgccgc 418 ||||||||||| ||||||||||||||| Sbjct: 15506996 cgacctcgccgacccggccgtcgccgc 15507022
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 216 atgctgccgtacgcgacgaccggcgatgcggaggcggcgctcggccgcgccctgacgtgg 275 ||||| |||||||||||| | | || |||||||||||| | || || | |||||||||| Sbjct: 480072 atgctcccgtacgcgacggcggcggaggcggaggcggcggtggggcggggcctgacgtgg 480013 Query: 276 gcggaggccgcgtggctccgctactcggcg 305 |||||||| || ||| |||||||||||||| Sbjct: 480012 gcggaggcggcctggttccgctactcggcg 479983 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Plus Query: 392 cgacctcgccgccccggccgtcgccgc 418 ||||||||||| ||||||||||||||| Sbjct: 15501530 cgacctcgccgacccggccgtcgccgc 15501556
>dbj|AK108704.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-A02, full insert sequence Length = 1276 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Plus Query: 216 atgctgccgtacgcgacgaccggcgatgcggaggcggcgctcggccgcgccctgacgtgg 275 ||||| |||||||||||| | | || |||||||||||| | || || | |||||||||| Sbjct: 129 atgctcccgtacgcgacggcggcggaggcggaggcggcggtagggcggggcctgacgtgg 188 Query: 276 gcggaggccgcgtggctccgctactcggcg 305 |||||||| || ||| |||||||||||||| Sbjct: 189 gcggaggcggcctggttccgctactcggcg 218
>gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1384D03, complete sequence Length = 116214 Score = 67.9 bits (34), Expect = 3e-08 Identities = 76/90 (84%) Strand = Plus / Minus Query: 216 atgctgccgtacgcgacgaccggcgatgcggaggcggcgctcggccgcgccctgacgtgg 275 ||||| |||||||||||| | | || |||||||||||| | || || | |||||||||| Sbjct: 78534 atgctcccgtacgcgacggcggcggaggcggaggcggcggtggggcggggcctgacgtgg 78475 Query: 276 gcggaggccgcgtggctccgctactcggcg 305 |||||||| || ||| |||||||||||||| Sbjct: 78474 gcggaggcggcctggttccgctactcggcg 78445
>ref|NM_197610.1| Oryza sativa (japonica cultivar-group) putative C-4 sterol methyl oxidase (OSJNBa0001O14.3), mRNA Length = 1219 Score = 54.0 bits (27), Expect = 4e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 354 gtcgtctacacgctggcgccgctgccgctcgccctcttcgacctcgccgccccggccgtc 413 ||||||| |||||| |||||||| || |||| ||| |||| ||| ||| ||||||| | Sbjct: 221 gtcgtcttcacgctcgcgccgctccccgtcgcgctcctcgagctccgcgcgccggccgcc 280 Query: 414 gccgcgccgtacaagctgcagcccaaggtgc 444 | | ||||| |||||||||||||||||||| Sbjct: 281 gtggggccgttcaagctgcagcccaaggtgc 311
>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete sequence Length = 178022 Score = 54.0 bits (27), Expect = 4e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 354 gtcgtctacacgctggcgccgctgccgctcgccctcttcgacctcgccgccccggccgtc 413 ||||||| |||||| |||||||| || |||| ||| |||| ||| ||| ||||||| | Sbjct: 51936 gtcgtcttcacgctcgcgccgctccccgtcgcgctcctcgagctccgcgcgccggccgcc 51995 Query: 414 gccgcgccgtacaagctgcagcccaaggtgc 444 | | ||||| |||||||||||||||||||| Sbjct: 51996 gtggggccgttcaagctgcagcccaaggtgc 52026
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 54.0 bits (27), Expect = 4e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 354 gtcgtctacacgctggcgccgctgccgctcgccctcttcgacctcgccgccccggccgtc 413 ||||||| |||||| |||||||| || |||| ||| |||| ||| ||| ||||||| | Sbjct: 20789537 gtcgtcttcacgctcgcgccgctccccgtcgcgctcctcgagctccgcgcgccggccgcc 20789596 Query: 414 gccgcgccgtacaagctgcagcccaaggtgc 444 | | ||||| |||||||||||||||||||| Sbjct: 20789597 gtggggccgttcaagctgcagcccaaggtgc 20789627
>dbj|AK121804.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097K13, full insert sequence Length = 1239 Score = 54.0 bits (27), Expect = 4e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 354 gtcgtctacacgctggcgccgctgccgctcgccctcttcgacctcgccgccccggccgtc 413 ||||||| |||||| |||||||| || |||| ||| |||| ||| ||| ||||||| | Sbjct: 261 gtcgtcttcacgctcgcgccgctccccgtcgcgctcctcgagctccgcgcgccggccgcc 320 Query: 414 gccgcgccgtacaagctgcagcccaaggtgc 444 | | ||||| |||||||||||||||||||| Sbjct: 321 gtggggccgttcaagctgcagcccaaggtgc 351
>dbj|AK098884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I03, full insert sequence Length = 1175 Score = 54.0 bits (27), Expect = 4e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 354 gtcgtctacacgctggcgccgctgccgctcgccctcttcgacctcgccgccccggccgtc 413 ||||||| |||||| |||||||| || |||| ||| |||| ||| ||| ||||||| | Sbjct: 197 gtcgtcttcacgctcgcgccgctccccgtcgcgctcctcgagctccgcgcgccggccgcc 256 Query: 414 gccgcgccgtacaagctgcagcccaaggtgc 444 | | ||||| |||||||||||||||||||| Sbjct: 257 gtggggccgttcaagctgcagcccaaggtgc 287
>dbj|AK061779.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-D10, full insert sequence Length = 1198 Score = 54.0 bits (27), Expect = 4e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 354 gtcgtctacacgctggcgccgctgccgctcgccctcttcgacctcgccgccccggccgtc 413 ||||||| |||||| |||||||| || |||| ||| |||| ||| ||| ||||||| | Sbjct: 191 gtcgtcttcacgctcgcgccgctccccgtcgcgctcctcgagctccgcgcgccggccgcc 250 Query: 414 gccgcgccgtacaagctgcagcccaaggtgc 444 | | ||||| |||||||||||||||||||| Sbjct: 251 gtggggccgttcaagctgcagcccaaggtgc 281
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 54.0 bits (27), Expect = 4e-04 Identities = 75/91 (82%) Strand = Plus / Plus Query: 354 gtcgtctacacgctggcgccgctgccgctcgccctcttcgacctcgccgccccggccgtc 413 ||||||| |||||| |||||||| || |||| ||| |||| ||| ||| ||||||| | Sbjct: 20800801 gtcgtcttcacgctcgcgccgctccccgtcgcgctcctcgagctccgcgcgccggccgcc 20800860 Query: 414 gccgcgccgtacaagctgcagcccaaggtgc 444 | | ||||| |||||||||||||||||||| Sbjct: 20800861 gtggggccgttcaagctgcagcccaaggtgc 20800891
>ref|XM_470813.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1254 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Plus Query: 392 cgacctcgccgccccggccgtcgccgc 418 ||||||||||| ||||||||||||||| Sbjct: 588 cgacctcgccgacccggccgtcgccgc 614
>gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence Length = 115079 Score = 46.1 bits (23), Expect = 0.097 Identities = 26/27 (96%) Strand = Plus / Plus Query: 392 cgacctcgccgccccggccgtcgccgc 418 ||||||||||| ||||||||||||||| Sbjct: 6547 cgacctcgccgacccggccgtcgccgc 6573
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 228 gcgacgaccggcgatgcggaggc 250 ||||||||||||||||||||||| Sbjct: 16190820 gcgacgaccggcgatgcggaggc 16190842 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 gcgacgaccggcgatgcggaggcg 251 ||||||||||||||||| |||||| Sbjct: 17034212 gcgacgaccggcgatgccgaggcg 17034189
>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1344_B01 Length = 170912 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 228 gcgacgaccggcgatgcggaggc 250 ||||||||||||||||||||||| Sbjct: 7336 gcgacgaccggcgatgcggaggc 7358
>dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556H01 Length = 149800 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 228 gcgacgaccggcgatgcggaggc 250 ||||||||||||||||||||||| Sbjct: 95421 gcgacgaccggcgatgcggaggc 95443
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 228 gcgacgaccggcgatgcggagg 249 |||||||||||||||||||||| Sbjct: 9279989 gcgacgaccggcgatgcggagg 9280010 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 cgctgccgctcgccctcttcgacc 396 |||||||||||||||||| ||||| Sbjct: 22554584 cgctgccgctcgccctctacgacc 22554561 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 cctcgccgccccggccgtcgccgc 418 |||||||||| ||||||||||||| Sbjct: 12113927 cctcgccgccgcggccgtcgccgc 12113904
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 384 gccctcttcgacctcgccgccccggc 409 ||||||||||||||||||| |||||| Sbjct: 2181752 gccctcttcgacctcgccgtcccggc 2181727 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 399 gccgccccggccgtcgccgcgccg 422 |||||||||||| ||||||||||| Sbjct: 6770054 gccgccccggccctcgccgcgccg 6770031
>dbj|AP005924.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0011J03 Length = 176461 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 228 gcgacgaccggcgatgcggagg 249 |||||||||||||||||||||| Sbjct: 40243 gcgacgaccggcgatgcggagg 40264
>ref|NM_193416.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 6411 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 gctggcgccgctgccgctcgccctc 389 |||| |||||||||||||||||||| Sbjct: 18 gctgccgccgctgccgctcgccctc 42
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 ccgccccggccgtcgccgcgc 420 ||||||||||||||||||||| Sbjct: 2864401 ccgccccggccgtcgccgcgc 2864381
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 365 gctggcgccgctgccgctcgccctc 389 |||| |||||||||||||||||||| Sbjct: 20726169 gctgccgccgctgccgctcgccctc 20726145 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 gcgacgaccggcgatgcggaggcg 251 ||||| |||||||||||||||||| Sbjct: 9845122 gcgacaaccggcgatgcggaggcg 9845145 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 gacgaccggcgatgcggagg 249 |||||||||||||||||||| Sbjct: 9836882 gacgaccggcgatgcggagg 9836901
>dbj|AP003933.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06 Length = 162304 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 365 gctggcgccgctgccgctcgccctc 389 |||| |||||||||||||||||||| Sbjct: 69127 gctgccgccgctgccgctcgccctc 69103
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 395 cctcgccgccccggccgtcgc 415 ||||||||||||||||||||| Sbjct: 39621 cctcgccgccccggccgtcgc 39601
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 398 cgccgccccggccgtcgccgcgccg 422 |||||||||||||| |||||||||| Sbjct: 2601411 cgccgccccggccgacgccgcgccg 2601435 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 gaggcggcgctcggccgcgc 265 |||||||||||||||||||| Sbjct: 1065007 gaggcggcgctcggccgcgc 1065026
>ref|XM_507473.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0026D20.17 mRNA Length = 1028 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 cctcgccgccccggccgtcgccgc 418 |||||||||| ||||||||||||| Sbjct: 136 cctcgccgccgcggccgtcgccgc 159
>ref|XM_507472.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0026D20.17 mRNA Length = 1032 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 cctcgccgccccggccgtcgccgc 418 |||||||||| ||||||||||||| Sbjct: 136 cctcgccgccgcggccgtcgccgc 159
>ref|XM_507471.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0026D20.17 mRNA Length = 1039 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 cctcgccgccccggccgtcgccgc 418 |||||||||| ||||||||||||| Sbjct: 130 cctcgccgccgcggccgtcgccgc 153
>ref|XM_506785.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0026D20.17 mRNA Length = 1043 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 cctcgccgccccggccgtcgccgc 418 |||||||||| ||||||||||||| Sbjct: 134 cctcgccgccgcggccgtcgccgc 157
>ref|XM_465175.1| Oryza sativa (japonica cultivar-group), mRNA Length = 988 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 cctcgccgccccggccgtcgccgc 418 |||||||||| ||||||||||||| Sbjct: 64 cctcgccgccgcggccgtcgccgc 87
>ref|XM_518072.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ14166 (LOC462234), mRNA Length = 1638 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 gccccggccgtcgccgcgcc 421 |||||||||||||||||||| Sbjct: 284 gccccggccgtcgccgcgcc 265
>gb|AC146913.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0013C12 map near S6115, complete sequence Length = 123718 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 cgaccggcgatgcggaggcg 251 |||||||||||||||||||| Sbjct: 86542 cgaccggcgatgcggaggcg 86523
>gb|AC147925.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032N11 map near 50283S, complete sequence Length = 139217 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 gcgacgaccggcgatgcggaggcg 251 |||||||||||| ||||||||||| Sbjct: 29270 gcgacgaccggcaatgcggaggcg 29293
>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007B15 map S10318, complete sequence Length = 125243 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 gcgacgaccggcgatgcggaggcg 251 ||||||||||||||||| |||||| Sbjct: 33434 gcgacgaccggcgatgccgaggcg 33411
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 ccgccccggccgtcgccgcg 419 |||||||||||||||||||| Sbjct: 2539713 ccgccccggccgtcgccgcg 2539732
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 cgtacgcgacgaccggcgat 242 |||||||||||||||||||| Sbjct: 4798569 cgtacgcgacgaccggcgat 4798550
>gb|AY763611.1| Aeromonas hydrophila isolate SSU type III secretion system locus, complete sequence Length = 26855 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 gccgctgccgctcgccctct 390 |||||||||||||||||||| Sbjct: 3938 gccgctgccgctcgccctct 3919
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 cgccccggccgtcgccgcgc 420 |||||||||||||||||||| Sbjct: 168904 cgccccggccgtcgccgcgc 168923
>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14, complete sequence Length = 175698 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 gcgacgaccggcgatgcggaggcg 251 ||||||||||||||||| |||||| Sbjct: 138271 gcgacgaccggcgatgccgaggcg 138248
>gb|AC153982.8| Mus musculus 6 BAC RP24-280G3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163461 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 aactttccaaggtgcgcaac 120 |||||||||||||||||||| Sbjct: 60348 aactttccaaggtgcgcaac 60367
>gb|AE006023.1| Caulobacter crescentus CB15 section 349 of 359 of the complete genome Length = 8617 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 cgccgccccggccgtcgccg 417 |||||||||||||||||||| Sbjct: 5798 cgccgccccggccgtcgccg 5817
>gb|AE005744.1| Caulobacter crescentus CB15 section 70 of 359 of the complete genome Length = 11532 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 398 cgccgccccggccgtcgccgcgcc 421 |||||||||||||| ||||||||| Sbjct: 7714 cgccgccccggccgccgccgcgcc 7737
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 gcgacgaccggcgatgcggaggcg 251 ||||||||||||||||| |||||| Sbjct: 22534516 gcgacgaccggcgatgccgaggcg 22534493
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 gcgacgaccggcgatgcggaggcg 251 |||||||||||| ||||||||||| Sbjct: 14414436 gcgacgaccggcaatgcggaggcg 14414459 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 cgaccggcgatgcggaggcg 251 |||||||||||||||||||| Sbjct: 12919206 cgaccggcgatgcggaggcg 12919187 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 gcgacgaccggcgatgcggaggcg 251 ||||||||||||||||| |||||| Sbjct: 3439479 gcgacgaccggcgatgccgaggcg 3439456 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 cgccgctgccgctcgccctc 389 |||||||||||||||||||| Sbjct: 2192155 cgccgctgccgctcgccctc 2192174
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 gcgacgaccggcgatgcggaggcg 251 ||||||||||||||||| |||||| Sbjct: 12042369 gcgacgaccggcgatgccgaggcg 12042346
>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025D05 Length = 145684 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 gcgacgaccggcgatgcggaggcg 251 ||||| |||||||||||||||||| Sbjct: 109372 gcgacaaccggcgatgcggaggcg 109395 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 gacgaccggcgatgcggagg 249 |||||||||||||||||||| Sbjct: 101132 gacgaccggcgatgcggagg 101151
>dbj|AP005800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016D04 Length = 147313 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 cgctgccgctcgccctcttcgacc 396 |||||||||||||||||| ||||| Sbjct: 124940 cgctgccgctcgccctctacgacc 124917
>dbj|AP005655.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0025H07 Length = 145605 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 gcgacgaccggcgatgcggaggcg 251 ||||||||||||||||| |||||| Sbjct: 27871 gcgacgaccggcgatgccgaggcg 27848
>dbj|AP005305.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0024C06 Length = 177529 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 gcgacgaccggcgatgcggaggcg 251 ||||||||||||||||| |||||| Sbjct: 93864 gcgacgaccggcgatgccgaggcg 93841
>dbj|AP005843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0024C16 Length = 137779 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 gcgacgaccggcgatgcggaggcg 251 ||||||||||||||||| |||||| Sbjct: 39503 gcgacgaccggcgatgccgaggcg 39480
>dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056I22 Length = 147728 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 cgctgccgctcgccctcttcgacc 396 |||||||||||||||||| ||||| Sbjct: 2395 cgctgccgctcgccctctacgacc 2372
>dbj|AP005476.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0026D20 Length = 130634 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 395 cctcgccgccccggccgtcgccgc 418 |||||||||| ||||||||||||| Sbjct: 62232 cctcgccgccgcggccgtcgccgc 62209
>dbj|AK104655.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C06, full insert sequence Length = 1043 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 cctcgccgccccggccgtcgccgc 418 |||||||||| ||||||||||||| Sbjct: 134 cctcgccgccgcggccgtcgccgc 157
>dbj|AK104630.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-C03, full insert sequence Length = 1039 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 cctcgccgccccggccgtcgccgc 418 |||||||||| ||||||||||||| Sbjct: 130 cctcgccgccgcggccgtcgccgc 153
>dbj|AK104181.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B07, full insert sequence Length = 1028 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 cctcgccgccccggccgtcgccgc 418 |||||||||| ||||||||||||| Sbjct: 136 cctcgccgccgcggccgtcgccgc 159
>emb|Z60077.1|HS188A2F H.sapiens CpG island DNA genomic Mse1 fragment, clone 188a2, forward read cpg188a2.ft1a Length = 143 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cgaccggcgatgcggaggcg 251 |||||||||||||||||||| Sbjct: 70 cgaccggcgatgcggaggcg 89
>dbj|AK061421.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-F07, full insert sequence Length = 988 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 cctcgccgccccggccgtcgccgc 418 |||||||||| ||||||||||||| Sbjct: 64 cctcgccgccgcggccgtcgccgc 87
>dbj|AK061195.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-H01, full insert sequence Length = 1032 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 395 cctcgccgccccggccgtcgccgc 418 |||||||||| ||||||||||||| Sbjct: 136 cctcgccgccgcggccgtcgccgc 159
>gb|AY107971.1| Zea mays PCO148268 mRNA sequence Length = 1323 Score = 40.1 bits (20), Expect = 6.0 Identities = 41/48 (85%) Strand = Plus / Plus Query: 215 gatgctgccgtacgcgacgaccggcgatgcggaggcggcgctcggccg 262 ||||||||| ||||||||| | | || |||||||||||||| ||||| Sbjct: 167 gatgctgccctacgcgacggcggcggaggcggaggcggcgcttggccg 214
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 111 ggtgcgcaacgaactctgccccga 134 |||||||||||||||||| ||||| Sbjct: 4180122 ggtgcgcaacgaactctggcccga 4180145
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 gcgacgaccggcgatgcggaggcg 251 |||||||||||| ||||||||||| Sbjct: 14496437 gcgacgaccggcaatgcggaggcg 14496460 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 cgaccggcgatgcggaggcg 251 |||||||||||||||||||| Sbjct: 12999413 cgaccggcgatgcggaggcg 12999394 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 228 gcgacgaccggcgatgcggaggcg 251 ||||||||||||||||| |||||| Sbjct: 3448183 gcgacgaccggcgatgccgaggcg 3448160 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 cgccgctgccgctcgccctc 389 |||||||||||||||||||| Sbjct: 2199936 cgccgctgccgctcgccctc 2199955
>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 125593 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 370 cgccgctgccgctcgccctc 389 |||||||||||||||||||| Sbjct: 88849 cgccgctgccgctcgccctc 88868 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,996,961 Number of Sequences: 3902068 Number of extensions: 1996961 Number of successful extensions: 51790 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 49386 Number of HSP's gapped (non-prelim): 2405 length of query: 444 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 422 effective length of database: 17,147,199,772 effective search space: 7236118303784 effective search space used: 7236118303784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
