ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast02d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 50 0.007
2emb|AL513462.1|NCB8L3 Neurospora crassa DNA linkage group V BAC ... 46 0.10
3emb|AL451109.1|NCB11A5 Neurospora crassa DNA linkage group V BAC... 46 0.10
4gb|CP000316.1| Polaromonas sp. JS666, complete genome 44 0.41
5ref|NM_001711.3| Homo sapiens biglycan (BGN), mRNA 42 1.6
6gb|BC004244.1| Homo sapiens biglycan, mRNA (cDNA clone MGC:10461... 42 1.6
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.6
8gb|U82695.3| Homo sapiens chromosome X clone XXcos-LN0617, XXcos... 42 1.6
9gb|AF274858.3| Homo sapiens chromosome X clone RP11-54I20, RP11-... 42 1.6
10emb|CR624916.1| full-length cDNA clone CS0DI005YM04 of Placenta ... 42 1.6
11emb|CR618469.1| full-length cDNA clone CS0DI007YF02 of Placenta ... 42 1.6
12dbj|AK094059.1| Homo sapiens cDNA FLJ36740 fis, clone UTERU20133... 42 1.6
13dbj|AK092954.1| Homo sapiens cDNA FLJ35635 fis, clone SPLEN20118... 42 1.6
14dbj|AK091155.1| Homo sapiens cDNA FLJ33836 fis, clone CTONG20044... 42 1.6
15dbj|AK093023.1| Homo sapiens cDNA FLJ35704 fis, clone SPLEN20201... 42 1.6
16emb|CR595264.1| full-length cDNA clone CS0DI069YC12 of Placenta ... 42 1.6
17gb|AY850387.1| Azospirillum brasilense disrupted AtrA (atrA) gen... 42 1.6
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
19gb|AC134239.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
20gb|BC002416.2| Homo sapiens biglycan, mRNA (cDNA clone MGC:2298 ... 42 1.6
21dbj|AK065972.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
22gb|U11686.1|HSU11686 Human biglycan BGN mRNA, partial cds and 3'UTR 42 1.6
23gb|M65154.1|HUMBGN4 Human biglycan (BGN) gene, intron 8 region 42 1.6
24gb|AC153508.2| Mus musculus 10 BAC RP23-233B6 (Roswell Park Canc... 40 6.4
25ref|XM_468078.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
26ref|XM_465955.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
27gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, c... 40 6.4
28gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
29gb|AC119865.12| Mus musculus chromosome 6, clone RP23-390N11, co... 40 6.4
30gb|AC023285.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 6.4
31ref|XM_842938.1| Leishmania major strain Friedlin hypothetical p... 40 6.4
32gb|AC123543.3| Lemur catta clone LB2-212N12, complete sequence 40 6.4
33ref|XM_766209.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 6.4
34gb|AC159539.6| Mus musculus chromosome 5, clone RP23-228F6, comp... 40 6.4
35gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.4
36gb|DP000004.1| Lemur catta target 1 genomic scaffold 40 6.4
37gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nippon... 40 6.4
38gb|AC159203.2| Mus musculus BAC clone RP23-239O13 from chromosom... 40 6.4
39dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
40dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
41gb|AF218541.1|AF218541 Homo sapiens collagen IV alpha 3 chain (C... 40 6.4
42dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
43gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold 40 6.4
44gb|AC069209.38| Homo sapiens 12 BAC RP11-340F14 (Roswell Park Ca... 40 6.4
45gb|AC123971.3| Lemur catta clone LB2-255J23, complete sequence 40 6.4
46dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
47dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
48dbj|AK103266.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
49emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 6.4
50gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
51gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
52gb|AC134436.4| Mus musculus BAC clone RP24-439M12 from 13, compl... 40 6.4 
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                        
Query: 208     ctcttcacctccaccacctccggcc 232
               |||||||||||||||||||||||||
Sbjct: 4259504 ctcttcacctccaccacctccggcc 4259480



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                        
Query: 165     ctcttcacctccaccacctccggcc 189
               |||||||||||||||||||||||||
Sbjct: 4259504 ctcttcacctccaccacctccggcc 4259480



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                        
Query: 122     ctcttcacctccaccacctccggcc 146
               |||||||||||||||||||||||||
Sbjct: 4259504 ctcttcacctccaccacctccggcc 4259480



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 251     ctcttcacctccaccacctc 270
               ||||||||||||||||||||
Sbjct: 4259504 ctcttcacctccaccacctc 4259485
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>emb|AL513462.1|NCB8L3 Neurospora crassa DNA linkage group V BAC contig B8L3
          Length = 112716

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 75   ccctccccacctcccaacctcctccgg 101
            ||||||| |||||||||||||||||||
Sbjct: 6713 ccctcccaacctcccaacctcctccgg 6739
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>emb|AL451109.1|NCB11A5 Neurospora crassa DNA linkage group V BAC clone B11A5
          Length = 74109

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 75    ccctccccacctcccaacctcctccgg 101
             ||||||| |||||||||||||||||||
Sbjct: 44898 ccctcccaacctcccaacctcctccgg 44924
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 281     cgcctgctgcctgacgccggagtccc 306
               ||||||| ||||||||||||||||||
Sbjct: 3616941 cgcctgccgcctgacgccggagtccc 3616966
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>ref|NM_001711.3| Homo sapiens biglycan (BGN), mRNA
          Length = 2401

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 81   ccacctcccaacctcctccgg 101
            |||||||||||||||||||||
Sbjct: 2191 ccacctcccaacctcctccgg 2171
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>gb|BC004244.1| Homo sapiens biglycan, mRNA (cDNA clone MGC:10461 IMAGE:3503374),
            complete cds
          Length = 2422

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 81   ccacctcccaacctcctccgg 101
            |||||||||||||||||||||
Sbjct: 2152 ccacctcccaacctcctccgg 2132
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 75      ccctccccacctcccaacctc 95
               |||||||||||||||||||||
Sbjct: 7547072 ccctccccacctcccaacctc 7547052
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>gb|U82695.3| Homo sapiens chromosome X clone XXcos-LN0617, XXcos-162H10, I104-J0935,
              XXcos-M1937, XXcos-12H4, XXcos-F0731 map q28, complete
              sequence
          Length = 167488

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 81     ccacctcccaacctcctccgg 101
              |||||||||||||||||||||
Sbjct: 114094 ccacctcccaacctcctccgg 114074
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>gb|AF274858.3| Homo sapiens chromosome X clone RP11-54I20, RP11-66N11 map q28,
             complete sequence
          Length = 191983

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 81    ccacctcccaacctcctccgg 101
             |||||||||||||||||||||
Sbjct: 68742 ccacctcccaacctcctccgg 68722
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>emb|CR624916.1| full-length cDNA clone CS0DI005YM04 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1686

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 81   ccacctcccaacctcctccgg 101
            |||||||||||||||||||||
Sbjct: 1532 ccacctcccaacctcctccgg 1512
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>emb|CR618469.1| full-length cDNA clone CS0DI007YF02 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 930

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 81  ccacctcccaacctcctccgg 101
           |||||||||||||||||||||
Sbjct: 745 ccacctcccaacctcctccgg 725
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>dbj|AK094059.1| Homo sapiens cDNA FLJ36740 fis, clone UTERU2013322, highly similar to
            BONE/CARTILAGE PROTEOGLYCAN I PRECURSOR
          Length = 2249

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 81   ccacctcccaacctcctccgg 101
            |||||||||||||||||||||
Sbjct: 2066 ccacctcccaacctcctccgg 2046
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>dbj|AK092954.1| Homo sapiens cDNA FLJ35635 fis, clone SPLEN2011805, highly similar to
            BONE/CARTILAGE PROTEOGLYCAN I PRECURSOR
          Length = 2219

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 81   ccacctcccaacctcctccgg 101
            |||||||||||||||||||||
Sbjct: 2030 ccacctcccaacctcctccgg 2010
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>dbj|AK091155.1| Homo sapiens cDNA FLJ33836 fis, clone CTONG2004423, highly similar to
            Mus musculus zinc finger protein (Mtsh1) mRNA
          Length = 3370

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 81   ccacctcccaacctcctccgg 101
            |||||||||||||||||||||
Sbjct: 3181 ccacctcccaacctcctccgg 3161
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>dbj|AK093023.1| Homo sapiens cDNA FLJ35704 fis, clone SPLEN2020183, highly similar to
            BONE/CARTILAGE PROTEOGLYCAN I PRECURSOR
          Length = 2274

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 81   ccacctcccaacctcctccgg 101
            |||||||||||||||||||||
Sbjct: 2085 ccacctcccaacctcctccgg 2065
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>emb|CR595264.1| full-length cDNA clone CS0DI069YC12 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 326

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 81  ccacctcccaacctcctccgg 101
           |||||||||||||||||||||
Sbjct: 141 ccacctcccaacctcctccgg 121
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>gb|AY850387.1| Azospirillum brasilense disrupted AtrA (atrA) gene, partial sequence;
            and AtrB (atrB) and AtrC (atrC) genes, complete cds
          Length = 4470

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 129  cctccaccacctccggccgcg 149
            |||||||||||||||||||||
Sbjct: 3255 cctccaccacctccggccgcg 3235



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 215  cctccaccacctccggccgcg 235
            |||||||||||||||||||||
Sbjct: 3255 cctccaccacctccggccgcg 3235



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 172  cctccaccacctccggccgcg 192
            |||||||||||||||||||||
Sbjct: 3255 cctccaccacctccggccgcg 3235
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 75      ccctccccacctcccaacctc 95
               |||||||||||||||||||||
Sbjct: 7544907 ccctccccacctcccaacctc 7544887
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>gb|AC134239.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0042A11, complete sequence
          Length = 113049

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 75    ccctccccacctcccaacctc 95
             |||||||||||||||||||||
Sbjct: 75968 ccctccccacctcccaacctc 75948
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>gb|BC002416.2| Homo sapiens biglycan, mRNA (cDNA clone MGC:2298 IMAGE:3162633),
            complete cds
          Length = 2352

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 81   ccacctcccaacctcctccgg 101
            |||||||||||||||||||||
Sbjct: 2142 ccacctcccaacctcctccgg 2122
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>dbj|AK065972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049G06, full
           insert sequence
          Length = 3003

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 75  ccctccccacctcccaacctc 95
           |||||||||||||||||||||
Sbjct: 84  ccctccccacctcccaacctc 104
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>gb|U11686.1|HSU11686 Human biglycan BGN mRNA, partial cds and 3'UTR
          Length = 1129

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 81  ccacctcccaacctcctccgg 101
           |||||||||||||||||||||
Sbjct: 940 ccacctcccaacctcctccgg 920
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>gb|M65154.1|HUMBGN4 Human biglycan (BGN) gene, intron 8 region
          Length = 260

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 81  ccacctcccaacctcctccgg 101
           |||||||||||||||||||||
Sbjct: 77  ccacctcccaacctcctccgg 57
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>gb|AC153508.2| Mus musculus 10 BAC RP23-233B6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 190780

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     ccctccccacctcccaacct 94
              ||||||||||||||||||||
Sbjct: 138275 ccctccccacctcccaacct 138294
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>ref|XM_468078.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4569

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 210 cttcacctccaccacctccg 229
           ||||||||||||||||||||
Sbjct: 81  cttcacctccaccacctccg 62



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 124 cttcacctccaccacctccg 143
           ||||||||||||||||||||
Sbjct: 81  cttcacctccaccacctccg 62



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 167 cttcacctccaccacctccg 186
           ||||||||||||||||||||
Sbjct: 81  cttcacctccaccacctccg 62
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>ref|XM_465955.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1562

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 210  cttcacctccaccacctccg 229
            ||||||||||||||||||||
Sbjct: 1043 cttcacctccaccacctccg 1024



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 167  cttcacctccaccacctccg 186
            ||||||||||||||||||||
Sbjct: 1043 cttcacctccaccacctccg 1024



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  cttcacctccaccacctccg 143
            ||||||||||||||||||||
Sbjct: 1043 cttcacctccaccacctccg 1024
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>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence
          Length = 1130447

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 427    gaggagctgctgccgcagct 446
              ||||||||||||||||||||
Sbjct: 307075 gaggagctgctgccgcagct 307094
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>gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0028G07, complete sequence
          Length = 157463

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   cctccaccacctccggccgc 234
             ||||||||||||||||||||
Sbjct: 16650 cctccaccacctccggccgc 16631



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   cctccaccacctccggccgc 191
             ||||||||||||||||||||
Sbjct: 16650 cctccaccacctccggccgc 16631



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   cctccaccacctccggccgc 148
             ||||||||||||||||||||
Sbjct: 16650 cctccaccacctccggccgc 16631
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>gb|AC119865.12| Mus musculus chromosome 6, clone RP23-390N11, complete sequence
          Length = 202454

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 76     cctccccacctcccaacctcctcc 99
              |||||||||| |||||||||||||
Sbjct: 160159 cctccccaccccccaacctcctcc 160136



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 76     cctccccacctcccaacctcctcc 99
              |||||||||| |||||||||||||
Sbjct: 160140 cctccccaccccccaacctcctcc 160117
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>gb|AC023285.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-333I11, complete
             sequence
          Length = 192255

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    cctccccacctcccaacctcctcc 99
             |||||||||| |||||||||||||
Sbjct: 96731 cctccccaccccccaacctcctcc 96754



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    cctccccacctcccaacctcctcc 99
             |||||||||| |||||||||||||
Sbjct: 96712 cctccccaccccccaacctcctcc 96735
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>ref|XM_842938.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0334)
            partial mRNA
          Length = 3999

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  gaggagctgctgccgcagct 446
            ||||||||||||||||||||
Sbjct: 1546 gaggagctgctgccgcagct 1565
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>gb|AC123543.3| Lemur catta clone LB2-212N12, complete sequence
          Length = 203201

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     ccccacctcccaacctcctc 98
              ||||||||||||||||||||
Sbjct: 200483 ccccacctcccaacctcctc 200464
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>ref|XM_766209.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_306_58193_60304)
            partial mRNA
          Length = 2112

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 252  tcttcacctccaccacctcaacgt 275
            ||||||||||||| ||||||||||
Sbjct: 1068 tcttcacctccacaacctcaacgt 1091
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>gb|AC159539.6| Mus musculus chromosome 5, clone RP23-228F6, complete sequence
          Length = 238599

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 76     cctccccacctcccaacctcctcc 99
              |||||||||||||| |||||||||
Sbjct: 152871 cctccccacctccccacctcctcc 152848
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     ccgcgcagacgccgacgcgc 38
              ||||||||||||||||||||
Sbjct: 824513 ccgcgcagacgccgacgcgc 824494
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>gb|DP000004.1| Lemur catta target 1 genomic scaffold
          Length = 1399362

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 79      ccccacctcccaacctcctc 98
               ||||||||||||||||||||
Sbjct: 1205873 ccccacctcccaacctcctc 1205854
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>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0050M22, from chromosome 10, complete sequence
          Length = 145417

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   cttcacctccaccacctccg 229
             ||||||||||||||||||||
Sbjct: 16625 cttcacctccaccacctccg 16606



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   cttcacctccaccacctccg 143
             ||||||||||||||||||||
Sbjct: 16625 cttcacctccaccacctccg 16606



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   cttcacctccaccacctccg 186
             ||||||||||||||||||||
Sbjct: 16625 cttcacctccaccacctccg 16606
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>gb|AC159203.2| Mus musculus BAC clone RP23-239O13 from chromosome 13, complete
            sequence
          Length = 181617

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 453  tgaggagcgggtacgactgc 472
            ||||||||||||||||||||
Sbjct: 6527 tgaggagcgggtacgactgc 6546
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 172      cctccaccacctccggccgc 191
                ||||||||||||||||||||
Sbjct: 17422636 cctccaccacctccggccgc 17422617



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 129      cctccaccacctccggccgc 148
                ||||||||||||||||||||
Sbjct: 17422636 cctccaccacctccggccgc 17422617



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 215      cctccaccacctccggccgc 234
                ||||||||||||||||||||
Sbjct: 17422636 cctccaccacctccggccgc 17422617
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 210     cttcacctccaccacctccg 229
               ||||||||||||||||||||
Sbjct: 9383141 cttcacctccaccacctccg 9383122



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 167     cttcacctccaccacctccg 186
               ||||||||||||||||||||
Sbjct: 9383141 cttcacctccaccacctccg 9383122



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 124     cttcacctccaccacctccg 143
               ||||||||||||||||||||
Sbjct: 9383141 cttcacctccaccacctccg 9383122
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>gb|AF218541.1|AF218541 Homo sapiens collagen IV alpha 3 chain (COL4A3) gene, exon 1 and
            partial cds; and collagen IV alpha 4 chain (COL4A4) gene,
            exon 1
          Length = 2524

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 234  cgcagacgccggcgcgcctc 253
            ||||||||||||||||||||
Sbjct: 1032 cgcagacgccggcgcgcctc 1013



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 191  cgcagacgccggcgcgcctc 210
            ||||||||||||||||||||
Sbjct: 1032 cgcagacgccggcgcgcctc 1013



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 148  cgcagacgccggcgcgcctc 167
            ||||||||||||||||||||
Sbjct: 1032 cgcagacgccggcgcgcctc 1013
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 124      cttcacctccaccacctccg 143
                ||||||||||||||||||||
Sbjct: 32915016 cttcacctccaccacctccg 32914997



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 167      cttcacctccaccacctccg 186
                ||||||||||||||||||||
Sbjct: 32915016 cttcacctccaccacctccg 32914997



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 210      cttcacctccaccacctccg 229
                ||||||||||||||||||||
Sbjct: 32915016 cttcacctccaccacctccg 32914997



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 167      cttcacctccaccacctccg 186
                ||||||||||||||||||||
Sbjct: 18554710 cttcacctccaccacctccg 18554729



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 124      cttcacctccaccacctccg 143
                ||||||||||||||||||||
Sbjct: 18554710 cttcacctccaccacctccg 18554729



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 210      cttcacctccaccacctccg 229
                ||||||||||||||||||||
Sbjct: 18554710 cttcacctccaccacctccg 18554729
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>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold
          Length = 1570569

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 79      ccccacctcccaacctcctc 98
               ||||||||||||||||||||
Sbjct: 1274506 ccccacctcccaacctcctc 1274487
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>gb|AC069209.38| Homo sapiens 12 BAC RP11-340F14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 157792

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    cctccccacctcccaacctcctcc 99
             |||||||||||||||||| |||||
Sbjct: 89660 cctccccacctcccaaccacctcc 89683
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>gb|AC123971.3| Lemur catta clone LB2-255J23, complete sequence
          Length = 222919

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    ccccacctcccaacctcctc 98
             ||||||||||||||||||||
Sbjct: 29430 ccccacctcccaacctcctc 29411
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>dbj|AP004140.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1534_E09
          Length = 126209

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   cttcacctccaccacctccg 229
             ||||||||||||||||||||
Sbjct: 69757 cttcacctccaccacctccg 69738



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   cttcacctccaccacctccg 143
             ||||||||||||||||||||
Sbjct: 69757 cttcacctccaccacctccg 69738



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   cttcacctccaccacctccg 186
             ||||||||||||||||||||
Sbjct: 69757 cttcacctccaccacctccg 69738
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>dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1789_D08
          Length = 128673

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   cttcacctccaccacctccg 143
             ||||||||||||||||||||
Sbjct: 95849 cttcacctccaccacctccg 95868



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   cttcacctccaccacctccg 186
             ||||||||||||||||||||
Sbjct: 95849 cttcacctccaccacctccg 95868



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   cttcacctccaccacctccg 229
             ||||||||||||||||||||
Sbjct: 95849 cttcacctccaccacctccg 95868
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>dbj|AK103266.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124G19, full
            insert sequence
          Length = 1562

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 210  cttcacctccaccacctccg 229
            ||||||||||||||||||||
Sbjct: 1043 cttcacctccaccacctccg 1024



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 167  cttcacctccaccacctccg 186
            ||||||||||||||||||||
Sbjct: 1043 cttcacctccaccacctccg 1024



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  cttcacctccaccacctccg 143
            ||||||||||||||||||||
Sbjct: 1043 cttcacctccaccacctccg 1024
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 224     cctccggccgcgcagacgccggcgcgcc 251
               ||||| |||||||| |||||||||||||
Sbjct: 1429385 cctccagccgcgcaaacgccggcgcgcc 1429358



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 138     cctccggccgcgcagacgccggcgcgcc 165
               ||||| |||||||| |||||||||||||
Sbjct: 1429385 cctccagccgcgcaaacgccggcgcgcc 1429358



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 181     cctccggccgcgcagacgccggcgcgcc 208
               ||||| |||||||| |||||||||||||
Sbjct: 1429385 cctccagccgcgcaaacgccggcgcgcc 1429358
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 124     cttcacctccaccacctccg 143
               ||||||||||||||||||||
Sbjct: 9389180 cttcacctccaccacctccg 9389161



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 167     cttcacctccaccacctccg 186
               ||||||||||||||||||||
Sbjct: 9389180 cttcacctccaccacctccg 9389161



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 210     cttcacctccaccacctccg 229
               ||||||||||||||||||||
Sbjct: 9389180 cttcacctccaccacctccg 9389161
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 129      cctccaccacctccggccgc 148
                ||||||||||||||||||||
Sbjct: 17516346 cctccaccacctccggccgc 17516327



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 215      cctccaccacctccggccgc 234
                ||||||||||||||||||||
Sbjct: 17516346 cctccaccacctccggccgc 17516327



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 172      cctccaccacctccggccgc 191
                ||||||||||||||||||||
Sbjct: 17516346 cctccaccacctccggccgc 17516327
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>gb|AC134436.4| Mus musculus BAC clone RP24-439M12 from 13, complete sequence
          Length = 128990

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 453  tgaggagcgggtacgactgc 472
            ||||||||||||||||||||
Sbjct: 9474 tgaggagcgggtacgactgc 9455


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,877,645
Number of Sequences: 3902068
Number of extensions: 3877645
Number of successful extensions: 108841
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107397
Number of HSP's gapped (non-prelim): 1444
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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