ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast02b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK070819.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
2gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome... 143 6e-31
3gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome... 143 6e-31
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 143 6e-31
5gb|AC144343.8| Medicago truncatula clone mth2-12c21, complete se... 58 3e-05
6gb|AC139707.10| Medicago truncatula clone mth2-16b22, complete s... 58 3e-05
7dbj|AP004976.1| Lotus japonicus genomic DNA, chromosome 3, clone... 56 1e-04
8gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, comple... 48 0.026
9dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 46 0.10
10gb|AC167968.5| Culex pipiens quinquefasciatus, clone Culex pipie... 44 0.41
11emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete ... 44 0.41
12dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 44 0.41
13gb|AE009043.1| Agrobacterium tumefaciens str. C58 circular chrom... 42 1.6
14gb|AC137823.45| Medicago truncatula clone mth2-14c17, complete s... 42 1.6
15gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytans... 42 1.6
16gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 42 1.6
17gb|AC151523.4| Medicago truncatula chromosome 7 BAC clone mth2-1... 42 1.6
18gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.6
19gb|AC110907.7| Mus musculus chromosome 7, clone RP24-180J10, com... 40 6.4
20ref|XM_480316.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
21gb|AC120135.7| Mus musculus chromosome 7, clone RP23-64O4, compl... 40 6.4
22gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
23gb|AC145809.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
24gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
25ref|NM_023649.1| Mus musculus Usher syndrome 1C homolog (human) ... 40 6.4
26ref|NM_153677.1| Mus musculus Usher syndrome 1C homolog (human) ... 40 6.4
27gb|BC010819.1| Mus musculus Usher syndrome 1C homolog (human), t... 40 6.4
28ref|NM_003483.4| Homo sapiens high mobility group AT-hook 2 (HMG... 40 6.4
29ref|NM_003484.1| Homo sapiens high mobility group AT-hook 2 (HMG... 40 6.4
30gb|DQ356948.1| Crocodilepox virus, complete genome 40 6.4
31gb|AY601867.1| Homo sapiens HMGA2f (HMGA2) mRNA, complete cds, a... 40 6.4
32gb|AY601866.1| Homo sapiens HMGA2e (HMGA2) mRNA, complete cds, a... 40 6.4
33gb|AY601865.1| Homo sapiens HMGA2e' (HMGA2) mRNA, complete cds, ... 40 6.4
34gb|AY601864.1| Homo sapiens HMGA2d' (HMGA2) mRNA, complete cds, ... 40 6.4
35gb|AY601863.1| Homo sapiens HMGA2d (HMGA2) mRNA, complete cds, a... 40 6.4
36gb|AY601862.1| Homo sapiens HMGA2c' (HMGA2) mRNA, complete cds, ... 40 6.4
37gb|AY601861.1| Homo sapiens HMGA2c (HMGA2) mRNA, complete cds, a... 40 6.4
38gb|AY246556.1| Mus musculus harmonin isoform b4 (Ush1c) mRNA, co... 40 6.4
39gb|AY588414.1| Rattus norvegicus harmonin a1 (Ush1c) mRNA, compl... 40 6.4
40gb|AC163033.4| Mus musculus BAC clone RP23-432F6 from chromosome... 40 6.4
41gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, comp... 40 6.4
42emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 6.4
43gb|AC129187.4| Mus musculus BAC clone RP23-427D4 from chromosome... 40 6.4
44gb|AC122415.4| Mus musculus BAC clone RP24-156A2 from chromosome... 40 6.4
45gb|AC020786.20| Mus musculus chromosome 7, clone RP23-178G8, com... 40 6.4
46gb|AC136740.10| Mus musculus chromosome 7, clone RP23-137A24, co... 40 6.4
47emb|AL732395.9| Human DNA sequence from clone RP11-77F5 on chrom... 40 6.4
48emb|X92518.1|HSHMGICP H.sapiens mRNA for HMGI-C protein 40 6.4
49gb|AE012391.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.4
50gb|AC069078.5| Homo sapiens chromosome 10 clone RP11-492B17, com... 40 6.4
51gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.4
52gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 6.4
53gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.4
54dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
55dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
56dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
57dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
58gb|AC107308.7| Homo sapiens 12 BAC RP11-677M24 (Roswell Park Can... 40 6.4
59gb|AF228925.1|AF228925 Mus musculus harmonin isoform b3 (Ush1c) ... 40 6.4
60gb|AF228924.1|AF228924 Mus musculus harmonin isoform a1 (Ush1c) ... 40 6.4
61gb|AY103465.1| Mus musculus harmonin isoform b2 (Ush1c) mRNA, co... 40 6.4
62gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.4
63ref|XM_226614.3| PREDICTED: Rattus norvegicus ankyrin repeat dom... 40 6.4
64dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
65dbj|AP005884.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
66dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
67dbj|BS000109.1| Pan troglodytes chromosome 22 clone:RP43-150L08,... 40 6.4
68dbj|AP001376.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.4
69dbj|AP001709.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.4
70gb|AC113008.9| Mus musculus chromosome 6, clone RP23-460E2, comp... 40 6.4
71gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 6.4
72dbj|AP000245.3| Homo sapiens genomic DNA, chromosome 21 clone:RP... 40 6.4
73gb|BC098641.1| Rattus norvegicus Usher syndrome 1C homolog (huma... 40 6.4
74dbj|AB093554.1| Streptomyces laurentii plasmid pSLS DNA, complet... 40 6.4
75gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
76emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4,... 40 6.4
77emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4,... 40 6.4
78dbj|AB209853.1| Homo sapiens mRNA for high mobility group AT-hoo... 40 6.4
79gb|L41044.1|HUMHMGIC01 Homo sapiens high-mobility group phosphop... 40 6.4
80gb|DQ278492.1| Lysobacter lactamgenus nonribosomal peptide synth... 40 6.4
81gb|U28750.1|HSHMGICG1 Human high-mobility group phosphoprotein i... 40 6.4
82gb|U28749.1|HSU28749 Human high-mobility group phosphoprotein is... 40 6.4
83emb|AL606914.9| Mouse DNA sequence from clone RP23-169H13 on chr... 40 6.4
84emb|Z31595.1|HSHMGICR H.sapiens HMGI-C mRNA for high mobility gr... 40 6.4
85dbj|AP000206.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 6.4 
>dbj|AK070819.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065F02, full
           insert sequence
          Length = 1552

 Score =  214 bits (108), Expect = 2e-52
 Identities = 180/204 (88%)
 Strand = Plus / Plus

                                                                       
Query: 168 ggcggcggggagggacaaggacgagcgccgccgcctgatgggcaggtgcgcgctcgccgt 227
           |||| |||||| ||||||||| || || |||||  || |||| |||||||   |||| ||
Sbjct: 206 ggcgacggggaaggacaaggaggaccggcgccgattggtggggaggtgcggcttcgcggt 265

                                                                       
Query: 228 cgtcggcatcatgagcaccctcctcgtctacggcgtcctccaggaaaaactcatgagagt 287
           ||||||||||||||||||||||||| |||||||| | |||||||||||| ||||||||||
Sbjct: 266 cgtcggcatcatgagcaccctcctcatctacggccttctccaggaaaaaatcatgagagt 325

                                                                       
Query: 288 tccctatggagcagagaaggagttcttcagatactcactttttcttgttttctgtaaccg 347
           ||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 326 tccatatggagcagaaaaggagttcttcagatactcgctttttcttgttttctgtaaccg 385

                                   
Query: 348 catcaccacatccatggtgtctgc 371
            |||||||| || | |||||||||
Sbjct: 386 tatcaccacgtctacggtgtctgc 409
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>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07,
             complete sequence
          Length = 164477

 Score =  143 bits (72), Expect = 6e-31
 Identities = 96/104 (92%)
 Strand = Plus / Plus

                                                                         
Query: 268   caggaaaaactcatgagagttccctatggagcagagaaggagttcttcagatactcactt 327
             ||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 27573 caggaaaaaatcatgagagttccatatggagcagaaaaggagttcttcagatactcgctt 27632

                                                         
Query: 328   tttcttgttttctgtaaccgcatcaccacatccatggtgtctgc 371
             |||||||||||||||||||| |||||||| || | |||||||||
Sbjct: 27633 tttcttgttttctgtaaccgtatcaccacgtctacggtgtctgc 27676



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 88/104 (84%)
 Strand = Plus / Plus

                                                                         
Query: 168   ggcggcggggagggacaaggacgagcgccgccgcctgatgggcaggtgcgcgctcgccgt 227
             |||| |||||| ||||||||| || || |||||  || |||| |||||||   |||| ||
Sbjct: 25060 ggcgacggggaaggacaaggaggaccggcgccgattggtggggaggtgcggcttcgcggt 25119

                                                         
Query: 228   cgtcggcatcatgagcaccctcctcgtctacggcgtcctccagg 271
             ||||||||||||||||||||||||| |||||||| | |||||||
Sbjct: 25120 cgtcggcatcatgagcaccctcctcatctacggccttctccagg 25163
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>gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1654_B10,
             complete sequence
          Length = 140282

 Score =  143 bits (72), Expect = 6e-31
 Identities = 96/104 (92%)
 Strand = Plus / Plus

                                                                         
Query: 268   caggaaaaactcatgagagttccctatggagcagagaaggagttcttcagatactcactt 327
             ||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 95592 caggaaaaaatcatgagagttccatatggagcagaaaaggagttcttcagatactcgctt 95651

                                                         
Query: 328   tttcttgttttctgtaaccgcatcaccacatccatggtgtctgc 371
             |||||||||||||||||||| |||||||| || | |||||||||
Sbjct: 95652 tttcttgttttctgtaaccgtatcaccacgtctacggtgtctgc 95695



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 88/104 (84%)
 Strand = Plus / Plus

                                                                         
Query: 168   ggcggcggggagggacaaggacgagcgccgccgcctgatgggcaggtgcgcgctcgccgt 227
             |||| |||||| ||||||||| || || |||||  || |||| |||||||   |||| ||
Sbjct: 93079 ggcgacggggaaggacaaggaggaccggcgccgattggtggggaggtgcggcttcgcggt 93138

                                                         
Query: 228   cgtcggcatcatgagcaccctcctcgtctacggcgtcctccagg 271
             ||||||||||||||||||||||||| |||||||| | |||||||
Sbjct: 93139 cgtcggcatcatgagcaccctcctcatctacggccttctccagg 93182
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score =  143 bits (72), Expect = 6e-31
 Identities = 96/104 (92%)
 Strand = Plus / Plus

                                                                          
Query: 268    caggaaaaactcatgagagttccctatggagcagagaaggagttcttcagatactcactt 327
              ||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct: 823150 caggaaaaaatcatgagagttccatatggagcagaaaaggagttcttcagatactcgctt 823209

                                                          
Query: 328    tttcttgttttctgtaaccgcatcaccacatccatggtgtctgc 371
              |||||||||||||||||||| |||||||| || | |||||||||
Sbjct: 823210 tttcttgttttctgtaaccgtatcaccacgtctacggtgtctgc 823253



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 88/104 (84%)
 Strand = Plus / Plus

                                                                          
Query: 168    ggcggcggggagggacaaggacgagcgccgccgcctgatgggcaggtgcgcgctcgccgt 227
              |||| |||||| ||||||||| || || |||||  || |||| |||||||   |||| ||
Sbjct: 820637 ggcgacggggaaggacaaggaggaccggcgccgattggtggggaggtgcggcttcgcggt 820696

                                                          
Query: 228    cgtcggcatcatgagcaccctcctcgtctacggcgtcctccagg 271
              ||||||||||||||||||||||||| |||||||| | |||||||
Sbjct: 820697 cgtcggcatcatgagcaccctcctcatctacggccttctccagg 820740
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>gb|AC144343.8| Medicago truncatula clone mth2-12c21, complete sequence
          Length = 130740

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/85 (83%)
 Strand = Plus / Minus

                                                                          
Query: 268    caggaaaaactcatgagagttccctatggagcagagaaggagttcttcagatactcactt 327
              ||||||||  |||||||| | || ||||||||||| |||||||  ||||   | ||||| 
Sbjct: 124281 caggaaaagatcatgagaataccatatggagcagaaaaggagtatttcaagcattcactc 124222

                                       
Query: 328    tttcttgttttctgtaaccgcatca 352
              |||||||||||||| ||||||||||
Sbjct: 124221 tttcttgttttctgcaaccgcatca 124197
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>gb|AC139707.10| Medicago truncatula clone mth2-16b22, complete sequence
          Length = 113689

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/85 (83%)
 Strand = Plus / Minus

                                                                         
Query: 268   caggaaaaactcatgagagttccctatggagcagagaaggagttcttcagatactcactt 327
             ||||||||  |||||||| | || ||||||||||| |||||||  ||||   | ||||| 
Sbjct: 15344 caggaaaagatcatgagaataccatatggagcagaaaaggagtatttcaagcattcactc 15285

                                      
Query: 328   tttcttgttttctgtaaccgcatca 352
             |||||||||||||| ||||||||||
Sbjct: 15284 tttcttgttttctgcaaccgcatca 15260
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>dbj|AP004976.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT09L18, TM0159,
             complete sequence
          Length = 91722

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                         
Query: 268   caggaaaaactcatgagagttccctatggagcagagaaggagttcttcagatactcactt 327
             ||||||||  ||||||||||||| ||||||||  | ||||| |  ||||   ||||||| 
Sbjct: 63397 caggaaaagatcatgagagttccttatggagctcaaaaggaatatttcaagcactcactc 63338

                                             
Query: 328   tttcttgttttctgtaaccgcatcaccacatc 359
             |||||||||||||| ||||| ||||| |||||
Sbjct: 63337 tttcttgttttctgcaaccgtatcacaacatc 63306



 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 446   aacatactaaccacaacttgccagta 471
             |||||||||||||||||||| |||||
Sbjct: 63095 aacatactaaccacaacttgtcagta 63070
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>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence
          Length = 168794

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 149   acgagccggcgctgccggtggcgg 172
             ||||||||||||||||||||||||
Sbjct: 84022 acgagccggcgctgccggtggcgg 84045
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 183    caaggacgagcgccgccgcctga 205
              |||||||||||||||||||||||
Sbjct: 865201 caaggacgagcgccgccgcctga 865179
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>gb|AC167968.5| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940121D9, complete sequence
          Length = 108830

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 143   tggcggacgagccggcgctgccggtg 168
             |||||||||||| |||||||||||||
Sbjct: 71025 tggcggacgagctggcgctgccggtg 71000
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>emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete genome; segment 1/29
          Length = 299050

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 216    cgcgctcgccgtcgtcggcatc 237
              ||||||||||||||||||||||
Sbjct: 142589 cgcgctcgccgtcgtcggcatc 142610
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 167     tggcggcggggagggacaagga 188
               ||||||||||||||||||||||
Sbjct: 2690817 tggcggcggggagggacaagga 2690796



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 185     aggacgagcgccgccgcctga 205
               |||||||||||||||||||||
Sbjct: 2754938 aggacgagcgccgccgcctga 2754918
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>gb|AE009043.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 69 of
            256 of the complete sequence
          Length = 11272

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 153  gccggcgctgccggtggcggc 173
            |||||||||||||||||||||
Sbjct: 6245 gccggcgctgccggtggcggc 6265
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>gb|AC137823.45| Medicago truncatula clone mth2-14c17, complete sequence
          Length = 135139

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 319    tactcactttttcttgttttc 339
              |||||||||||||||||||||
Sbjct: 122208 tactcactttttcttgttttc 122188
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>gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytansinoid antitumor agent
             ansamitocin biosynthetic gene cluster I, partial sequence
          Length = 82746

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 212   ggtgcgcgctcgccgtcgtcg 232
             |||||||||||||||||||||
Sbjct: 77786 ggtgcgcgctcgccgtcgtcg 77766
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 153    gccggcgctgccggtggcggc 173
              |||||||||||||||||||||
Sbjct: 756439 gccggcgctgccggtggcggc 756459
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>gb|AC151523.4| Medicago truncatula chromosome 7 BAC clone mth2-166j21, complete
             sequence
          Length = 123340

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 319   tactcactttttcttgttttc 339
             |||||||||||||||||||||
Sbjct: 97503 tactcactttttcttgttttc 97523
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 216    cgcgctcgccgtcgtcggcatcatg 240
              |||||||||||||| ||||||||||
Sbjct: 563238 cgcgctcgccgtcggcggcatcatg 563262
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>gb|AC110907.7| Mus musculus chromosome 7, clone RP24-180J10, complete sequence
          Length = 179750

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    gagcaggctagccagggcta 113
             ||||||||||||||||||||
Sbjct: 44327 gagcaggctagccagggcta 44346
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>ref|XM_480316.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 519

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 155 cggcgctgccggtggcggcg 174
           ||||||||||||||||||||
Sbjct: 384 cggcgctgccggtggcggcg 365
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>gb|AC120135.7| Mus musculus chromosome 7, clone RP23-64O4, complete sequence
          Length = 220872

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 405   tccagtggccccatccagaa 424
             ||||||||||||||||||||
Sbjct: 19170 tccagtggccccatccagaa 19189
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>gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0122P24,
              complete sequence
          Length = 136104

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 214    tgcgcgctcgccgtcgtcggcatc 237
              ||||||||||||| ||||||||||
Sbjct: 108695 tgcgcgctcgccgccgtcggcatc 108672
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>gb|AC145809.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0023E20, complete sequence
          Length = 130827

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 214  tgcgcgctcgccgtcgtcggcatc 237
            ||||||||||||| ||||||||||
Sbjct: 1066 tgcgcgctcgccgccgtcggcatc 1043
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>gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0004O15 map near R3342S, complete sequence
          Length = 140142

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 155   cggcgctgccggtggcggcgggga 178
             ||||| ||||||||||||||||||
Sbjct: 91506 cggcggtgccggtggcggcgggga 91529
to top
>ref|NM_023649.1| Mus musculus Usher syndrome 1C homolog (human) (Ush1c), transcript
           variant a1, mRNA
          Length = 2063

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 tccagtggccccatccagaa 424
           ||||||||||||||||||||
Sbjct: 705 tccagtggccccatccagaa 724
to top
>ref|NM_153677.1| Mus musculus Usher syndrome 1C homolog (human) (Ush1c), transcript
           variant b3, mRNA
          Length = 3084

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 tccagtggccccatccagaa 424
           ||||||||||||||||||||
Sbjct: 705 tccagtggccccatccagaa 724
to top
>gb|BC010819.1| Mus musculus Usher syndrome 1C homolog (human), transcript variant
           a1, mRNA (cDNA clone MGC:19139 IMAGE:4217086), complete
           cds
          Length = 2084

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 tccagtggccccatccagaa 424
           ||||||||||||||||||||
Sbjct: 707 tccagtggccccatccagaa 726
to top
>ref|NM_003483.4| Homo sapiens high mobility group AT-hook 2 (HMGA2), transcript
           variant 1, mRNA
          Length = 4150

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 ggcgctgccggtggcggcgg 175
           ||||||||||||||||||||
Sbjct: 578 ggcgctgccggtggcggcgg 559
to top
>ref|NM_003484.1| Homo sapiens high mobility group AT-hook 2 (HMGA2), transcript
           variant 2, mRNA
          Length = 1539

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 ggcgctgccggtggcggcgg 175
           ||||||||||||||||||||
Sbjct: 578 ggcgctgccggtggcggcgg 559
to top
>gb|DQ356948.1| Crocodilepox virus, complete genome
          Length = 190054

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   cgagcgccgccgcctgatgg 208
             ||||||||||||||||||||
Sbjct: 70591 cgagcgccgccgcctgatgg 70572
to top
>gb|AY601867.1| Homo sapiens HMGA2f (HMGA2) mRNA, complete cds, alternatively
           spliced
          Length = 1449

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 ggcgctgccggtggcggcgg 175
           ||||||||||||||||||||
Sbjct: 578 ggcgctgccggtggcggcgg 559
to top
>gb|AY601866.1| Homo sapiens HMGA2e (HMGA2) mRNA, complete cds, alternatively
           spliced
          Length = 1358

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 ggcgctgccggtggcggcgg 175
           ||||||||||||||||||||
Sbjct: 578 ggcgctgccggtggcggcgg 559
to top
>gb|AY601865.1| Homo sapiens HMGA2e' (HMGA2) mRNA, complete cds, alternatively
           spliced
          Length = 1788

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 ggcgctgccggtggcggcgg 175
           ||||||||||||||||||||
Sbjct: 578 ggcgctgccggtggcggcgg 559
to top
>gb|AY601864.1| Homo sapiens HMGA2d' (HMGA2) mRNA, complete cds, alternatively
           spliced
          Length = 1527

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 ggcgctgccggtggcggcgg 175
           ||||||||||||||||||||
Sbjct: 578 ggcgctgccggtggcggcgg 559
to top
>gb|AY601863.1| Homo sapiens HMGA2d (HMGA2) mRNA, complete cds, alternatively
           spliced
          Length = 1208

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 ggcgctgccggtggcggcgg 175
           ||||||||||||||||||||
Sbjct: 578 ggcgctgccggtggcggcgg 559
to top
>gb|AY601862.1| Homo sapiens HMGA2c' (HMGA2) mRNA, complete cds, alternatively
           spliced
          Length = 1508

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 ggcgctgccggtggcggcgg 175
           ||||||||||||||||||||
Sbjct: 578 ggcgctgccggtggcggcgg 559
to top
>gb|AY601861.1| Homo sapiens HMGA2c (HMGA2) mRNA, complete cds, alternatively
           spliced
          Length = 1387

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 ggcgctgccggtggcggcgg 175
           ||||||||||||||||||||
Sbjct: 578 ggcgctgccggtggcggcgg 559
to top
>gb|AY246556.1| Mus musculus harmonin isoform b4 (Ush1c) mRNA, complete cds;
           alternatively spliced
          Length = 2768

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 tccagtggccccatccagaa 424
           ||||||||||||||||||||
Sbjct: 679 tccagtggccccatccagaa 698
to top
>gb|AY588414.1| Rattus norvegicus harmonin a1 (Ush1c) mRNA, complete cds;
           alternatively spliced
          Length = 1738

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 tccagtggccccatccagaa 424
           ||||||||||||||||||||
Sbjct: 679 tccagtggccccatccagaa 698
to top
>gb|AC163033.4| Mus musculus BAC clone RP23-432F6 from chromosome 12, complete sequence
          Length = 201510

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 323    cactttttcttgttttctgt 342
              ||||||||||||||||||||
Sbjct: 134097 cactttttcttgttttctgt 134116
to top
>gb|AC113181.7| Mus musculus chromosome 5, clone RP23-359I6, complete sequence
          Length = 213684

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 325    ctttttcttgttttctgtaa 344
              ||||||||||||||||||||
Sbjct: 128001 ctttttcttgttttctgtaa 128020
to top
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 156     ggcgctgccggtggcggcgg 175
               ||||||||||||||||||||
Sbjct: 2865739 ggcgctgccggtggcggcgg 2865758
to top
>gb|AC129187.4| Mus musculus BAC clone RP23-427D4 from chromosome 5, complete sequence
          Length = 198245

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   ctttttcttgttttctgtaa 344
             ||||||||||||||||||||
Sbjct: 28581 ctttttcttgttttctgtaa 28600
to top
>gb|AC122415.4| Mus musculus BAC clone RP24-156A2 from chromosome 16, complete sequence
          Length = 173829

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   atactcactttttcttgttt 337
             ||||||||||||||||||||
Sbjct: 90810 atactcactttttcttgttt 90791
to top
>gb|AC020786.20| Mus musculus chromosome 7, clone RP23-178G8, complete sequence
          Length = 227330

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 405    tccagtggccccatccagaa 424
              ||||||||||||||||||||
Sbjct: 187025 tccagtggccccatccagaa 187044
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>gb|AC136740.10| Mus musculus chromosome 7, clone RP23-137A24, complete sequence
          Length = 219863

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     gagcaggctagccagggcta 113
              ||||||||||||||||||||
Sbjct: 207173 gagcaggctagccagggcta 207192
to top
>emb|AL732395.9| Human DNA sequence from clone RP11-77F5 on chromosome 10 Contains the
             3' end of the gene for uncharacterized hematopoietic
             stem/progenitor cells (MDS026), complete sequence
          Length = 54050

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 159   gctgccggtggcggcggggaggga 182
             ||||||||||| ||||||||||||
Sbjct: 15702 gctgccggtggtggcggggaggga 15679
to top
>emb|X92518.1|HSHMGICP H.sapiens mRNA for HMGI-C protein
          Length = 4633

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 156  ggcgctgccggtggcggcgg 175
            ||||||||||||||||||||
Sbjct: 1079 ggcgctgccggtggcggcgg 1060
to top
>gb|AE012391.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 299
            of 460 of the complete genome
          Length = 11677

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 156  ggcgctgccggtggcggcgg 175
            ||||||||||||||||||||
Sbjct: 6316 ggcgctgccggtggcggcgg 6297
to top
>gb|AC069078.5| Homo sapiens chromosome 10 clone RP11-492B17, complete sequence
          Length = 187669

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    ggcgctgccggtggcggcgg 175
              ||||||||||||||||||||
Sbjct: 149561 ggcgctgccggtggcggcgg 149542
to top
>gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042K08, from chromosome 2, complete sequence
          Length = 164628

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 214   tgcgcgctcgccgtcgtcggcatc 237
             ||||||||||||| ||||||||||
Sbjct: 77375 tgcgcgctcgccgccgtcggcatc 77352
to top
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 190     gagcgccgccgcctgatgggcagg 213
               ||||||||| ||||||||||||||
Sbjct: 3424201 gagcgccgcagcctgatgggcagg 3424178
to top
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 156     ggcgctgccggtggcggcgg 175
               ||||||||||||||||||||
Sbjct: 1613790 ggcgctgccggtggcggcgg 1613809
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 183      caaggacgagcgccgccgcc 202
                ||||||||||||||||||||
Sbjct: 25995864 caaggacgagcgccgccgcc 25995883
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 155      cggcgctgccggtggcggcgggga 178
                ||||| ||||||||||||||||||
Sbjct: 27630467 cggcggtgccggtggcggcgggga 27630444



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 214     tgcgcgctcgccgtcgtcggcatc 237
               ||||||||||||| ||||||||||
Sbjct: 7362103 tgcgcgctcgccgccgtcggcatc 7362126
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 185     aggacgagcgccgccgcctg 204
               ||||||||||||||||||||
Sbjct: 1288165 aggacgagcgccgccgcctg 1288146
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 155     cggcgctgccggtggcggcg 174
               ||||||||||||||||||||
Sbjct: 4288034 cggcgctgccggtggcggcg 4288015
to top
>gb|AC107308.7| Homo sapiens 12 BAC RP11-677M24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 98485

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   ggcgctgccggtggcggcgg 175
             ||||||||||||||||||||
Sbjct: 68788 ggcgctgccggtggcggcgg 68769
to top
>gb|AF228925.1|AF228925 Mus musculus harmonin isoform b3 (Ush1c) mRNA, complete cds,
           alternatively spliced
          Length = 3084

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 tccagtggccccatccagaa 424
           ||||||||||||||||||||
Sbjct: 705 tccagtggccccatccagaa 724
to top
>gb|AF228924.1|AF228924 Mus musculus harmonin isoform a1 (Ush1c) mRNA, complete cds,
           alternatively spliced
          Length = 2063

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 tccagtggccccatccagaa 424
           ||||||||||||||||||||
Sbjct: 705 tccagtggccccatccagaa 724
to top
>gb|AY103465.1| Mus musculus harmonin isoform b2 (Ush1c) mRNA, complete cds;
           alternatively spliced
          Length = 3061

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 tccagtggccccatccagaa 424
           ||||||||||||||||||||
Sbjct: 705 tccagtggccccatccagaa 724
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     ggcggacgagccggcgctgc 163
               ||||||||||||||||||||
Sbjct: 1004037 ggcggacgagccggcgctgc 1004056
to top
>ref|XM_226614.3| PREDICTED: Rattus norvegicus ankyrin repeat domain 32 (predicted)
           (Ankrd32_predicted), mRNA
          Length = 1971

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 ggcgctgccggtggcggcgg 175
           ||||||||||||||||||||
Sbjct: 70  ggcgctgccggtggcggcgg 51
to top
>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0054L03
          Length = 183623

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   cggcgctgccggtggcggcg 174
             ||||||||||||||||||||
Sbjct: 50828 cggcgctgccggtggcggcg 50809
to top
>dbj|AP005884.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0598D02
          Length = 155238

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   aggacgagcgccgccgcctg 204
             ||||||||||||||||||||
Sbjct: 59169 aggacgagcgccgccgcctg 59150
to top
>dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0563F09
          Length = 174905

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    aggacgagcgccgccgcctg 204
              ||||||||||||||||||||
Sbjct: 119039 aggacgagcgccgccgcctg 119020
to top
>dbj|BS000109.1| Pan troglodytes chromosome 22 clone:RP43-150L08, map 22, complete
             sequences
          Length = 157620

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 414   cccatccagaaatactgtgt 433
             ||||||||||||||||||||
Sbjct: 66719 cccatccagaaatactgtgt 66738
to top
>dbj|AP001376.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-775E2, complete
             sequence
          Length = 181300

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   cactttttcttgttttctgt 342
             ||||||||||||||||||||
Sbjct: 22425 cactttttcttgttttctgt 22406
to top
>dbj|AP001709.1| Homo sapiens genomic DNA, chromosome 21q, section 53/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 414    cccatccagaaatactgtgt 433
              ||||||||||||||||||||
Sbjct: 304411 cccatccagaaatactgtgt 304430
to top
>gb|AC113008.9| Mus musculus chromosome 6, clone RP23-460E2, complete sequence
          Length = 229790

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    tcggcatcatgagcaccctc 249
              ||||||||||||||||||||
Sbjct: 147395 tcggcatcatgagcaccctc 147376
to top
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 156     ggcgctgccggtggcggcgg 175
               ||||||||||||||||||||
Sbjct: 1864362 ggcgctgccggtggcggcgg 1864381
to top
>dbj|AP000245.3| Homo sapiens genomic DNA, chromosome 21 clone:RP11-14B21, complete
             sequence
          Length = 159903

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 414   cccatccagaaatactgtgt 433
             ||||||||||||||||||||
Sbjct: 72987 cccatccagaaatactgtgt 73006
to top
>gb|BC098641.1| Rattus norvegicus Usher syndrome 1C homolog (human), mRNA (cDNA
           clone MGC:112571 IMAGE:7109129), complete cds
          Length = 2172

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 tccagtggccccatccagaa 424
           ||||||||||||||||||||
Sbjct: 797 tccagtggccccatccagaa 816
to top
>dbj|AB093554.1| Streptomyces laurentii plasmid pSLS DNA, complete sequence
          Length = 15397

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  cgcgctcgccgtcgtcggca 235
            ||||||||||||||||||||
Sbjct: 9407 cgcgctcgccgtcgtcggca 9426
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 155      cggcgctgccggtggcggcgggga 178
                ||||| ||||||||||||||||||
Sbjct: 27654455 cggcggtgccggtggcggcgggga 27654432



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 214     tgcgcgctcgccgtcgtcggcatc 237
               ||||||||||||| ||||||||||
Sbjct: 7432189 tgcgcgctcgccgccgtcggcatc 7432212
to top
>emb|AL662958.3|OSJN00156 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11,
             complete sequence
          Length = 163039

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   caaggacgagcgccgccgcc 202
             ||||||||||||||||||||
Sbjct: 30191 caaggacgagcgccgccgcc 30210
to top
>emb|AL731629.2|OSJN00274 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13,
              complete sequence
          Length = 139226

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    caaggacgagcgccgccgcc 202
              ||||||||||||||||||||
Sbjct: 122126 caaggacgagcgccgccgcc 122145
to top
>dbj|AB209853.1| Homo sapiens mRNA for high mobility group AT-hook 2 variant protein
          Length = 8095

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 ggcgctgccggtggcggcgg 175
           ||||||||||||||||||||
Sbjct: 140 ggcgctgccggtggcggcgg 121
to top
>gb|L41044.1|HUMHMGIC01 Homo sapiens high-mobility group phosphoprotein (HMGI-C) gene, exons
            1-3, complete cds
          Length = 16727

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 156  ggcgctgccggtggcggcgg 175
            ||||||||||||||||||||
Sbjct: 2707 ggcgctgccggtggcggcgg 2688
to top
>gb|DQ278492.1| Lysobacter lactamgenus nonribosomal peptide synthetase - polyketide
            synthase hybrid (cpbI) gene, complete cds
          Length = 15150

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 215  gcgcgctcgccgtcgtcggc 234
            ||||||||||||||||||||
Sbjct: 9413 gcgcgctcgccgtcgtcggc 9394
to top
>gb|U28750.1|HSHMGICG1 Human high-mobility group phosphoprotein isoform I-C (HMGIC) gene,
            exon 1
          Length = 2701

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 156  ggcgctgccggtggcggcgg 175
            ||||||||||||||||||||
Sbjct: 2024 ggcgctgccggtggcggcgg 2005
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>gb|U28749.1|HSU28749 Human high-mobility group phosphoprotein isoform I-C (HMGIC) mRNA,
           complete cds
          Length = 4067

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 ggcgctgccggtggcggcgg 175
           ||||||||||||||||||||
Sbjct: 578 ggcgctgccggtggcggcgg 559
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>emb|AL606914.9| Mouse DNA sequence from clone RP23-169H13 on chromosome 4, complete
             sequence
          Length = 197061

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   ggcggcggggagggacaagg 187
             ||||||||||||||||||||
Sbjct: 28437 ggcggcggggagggacaagg 28418
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>emb|Z31595.1|HSHMGICR H.sapiens HMGI-C mRNA for high mobility group protein I-C
          Length = 1200

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 ggcgctgccggtggcggcgg 175
           ||||||||||||||||||||
Sbjct: 579 ggcgctgccggtggcggcgg 560
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>dbj|AP000206.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             f43D11-119B8, segment 4/12, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 414   cccatccagaaatactgtgt 433
             ||||||||||||||||||||
Sbjct: 39399 cccatccagaaatactgtgt 39418


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,986,803
Number of Sequences: 3902068
Number of extensions: 3986803
Number of successful extensions: 92229
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90562
Number of HSP's gapped (non-prelim): 1665
length of query: 474
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 452
effective length of database: 17,147,199,772
effective search space: 7750534296944
effective search space used: 7750534296944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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