| Clone Name | bast01h08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_464560.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1499 Score = 71.9 bits (36), Expect = 4e-10 Identities = 36/36 (100%) Strand = Plus / Plus Query: 93 gggctgctggcgaacggcaacttcgagcgcgggccg 128 |||||||||||||||||||||||||||||||||||| Sbjct: 239 gggctgctggcgaacggcaacttcgagcgcgggccg 274
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 71.9 bits (36), Expect = 4e-10 Identities = 36/36 (100%) Strand = Plus / Minus Query: 93 gggctgctggcgaacggcaacttcgagcgcgggccg 128 |||||||||||||||||||||||||||||||||||| Sbjct: 5913954 gggctgctggcgaacggcaacttcgagcgcgggccg 5913919
>dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056C19 Length = 147739 Score = 71.9 bits (36), Expect = 4e-10 Identities = 36/36 (100%) Strand = Plus / Minus Query: 93 gggctgctggcgaacggcaacttcgagcgcgggccg 128 |||||||||||||||||||||||||||||||||||| Sbjct: 92175 gggctgctggcgaacggcaacttcgagcgcgggccg 92140
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 71.9 bits (36), Expect = 4e-10 Identities = 36/36 (100%) Strand = Plus / Minus Query: 93 gggctgctggcgaacggcaacttcgagcgcgggccg 128 |||||||||||||||||||||||||||||||||||| Sbjct: 143756 gggctgctggcgaacggcaacttcgagcgcgggccg 143721
>dbj|AK106819.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D06, full insert sequence Length = 1498 Score = 71.9 bits (36), Expect = 4e-10 Identities = 36/36 (100%) Strand = Plus / Plus Query: 93 gggctgctggcgaacggcaacttcgagcgcgggccg 128 |||||||||||||||||||||||||||||||||||| Sbjct: 239 gggctgctggcgaacggcaacttcgagcgcgggccg 274
>ref|XM_473018.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1122 Score = 48.1 bits (24), Expect = 0.006 Identities = 33/36 (91%) Strand = Plus / Plus Query: 84 atcaccgatgggctgctggcgaacggcaacttcgag 119 ||||||||||| |||||| |||| |||||||||||| Sbjct: 76 atcaccgatggcctgctgccgaatggcaacttcgag 111
>dbj|AK072539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133J23, full insert sequence Length = 1588 Score = 48.1 bits (24), Expect = 0.006 Identities = 33/36 (91%) Strand = Plus / Plus Query: 84 atcaccgatgggctgctggcgaacggcaacttcgag 119 ||||||||||| |||||| |||| |||||||||||| Sbjct: 480 atcaccgatggcctgctgccgaatggcaacttcgag 515
>dbj|AK063925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C04, full insert sequence Length = 1517 Score = 48.1 bits (24), Expect = 0.006 Identities = 33/36 (91%) Strand = Plus / Plus Query: 84 atcaccgatgggctgctggcgaacggcaacttcgag 119 ||||||||||| |||||| |||| |||||||||||| Sbjct: 189 atcaccgatggcctgctgccgaatggcaacttcgag 224
>ref|NM_192744.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1122 Score = 46.1 bits (23), Expect = 0.025 Identities = 32/35 (91%) Strand = Plus / Plus Query: 85 tcaccgatgggctgctggcgaacggcaacttcgag 119 ||||||| |||||| || ||||||||||||||||| Sbjct: 68 tcaccgacgggctgttgccgaacggcaacttcgag 102
>dbj|AK105921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A04, full insert sequence Length = 1474 Score = 46.1 bits (23), Expect = 0.025 Identities = 32/35 (91%) Strand = Plus / Plus Query: 85 tcaccgatgggctgctggcgaacggcaacttcgag 119 ||||||| |||||| || ||||||||||||||||| Sbjct: 56 tcaccgacgggctgttgccgaacggcaacttcgag 90
>dbj|AK100501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099J05, full insert sequence Length = 3062 Score = 46.1 bits (23), Expect = 0.025 Identities = 32/35 (91%) Strand = Plus / Plus Query: 85 tcaccgatgggctgctggcgaacggcaacttcgag 119 ||||||| |||||| || ||||||||||||||||| Sbjct: 185 tcaccgacgggctgttgccgaacggcaacttcgag 219
>dbj|AK072500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H12, full insert sequence Length = 1690 Score = 46.1 bits (23), Expect = 0.025 Identities = 32/35 (91%) Strand = Plus / Plus Query: 85 tcaccgatgggctgctggcgaacggcaacttcgag 119 ||||||| |||||| || ||||||||||||||||| Sbjct: 185 tcaccgacgggctgttgccgaacggcaacttcgag 219
>dbj|AK060682.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E10, full insert sequence Length = 1597 Score = 46.1 bits (23), Expect = 0.025 Identities = 32/35 (91%) Strand = Plus / Plus Query: 85 tcaccgatgggctgctggcgaacggcaacttcgag 119 ||||||| |||||| || ||||||||||||||||| Sbjct: 181 tcaccgacgggctgttgccgaacggcaacttcgag 215
>ref|XM_473021.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 207 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 aacggcaacttcgagcgcgggccg 128 |||||||||||||||| ||||||| Sbjct: 103 aacggcaacttcgagcacgggccg 126
>ref|XM_752807.1| Ustilago maydis 521 hypothetical protein (UM01753.1) partial mRNA Length = 1020 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 tggcaaggtcagccatgtccgggc 39 ||||||||||||||| |||||||| Sbjct: 70 tggcaaggtcagccaggtccgggc 93
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 aacggcaacttcgagcgcgggccg 128 |||||||||||||||| ||||||| Sbjct: 24727202 aacggcaacttcgagcacgggccg 24727225
>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11, complete sequence Length = 133856 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 aacggcaacttcgagcgcgggccg 128 |||||||||||||||| ||||||| Sbjct: 116725 aacggcaacttcgagcacgggccg 116748
>ref|XM_656421.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3909.2), mRNA Length = 3420 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 gggctgctggcgaacggca 111 ||||||||||||||||||| Sbjct: 2484 gggctgctggcgaacggca 2466
>gb|AY597283.1| Pseudomonas viridiflava strain RMX3.1b pathogenicity island PAI-Region-2, partial sequence Length = 39281 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 104 gaacggcaacttcgagcgc 122 ||||||||||||||||||| Sbjct: 19083 gaacggcaacttcgagcgc 19101
>dbj|AB226316.1| Aspergillus oryzae cDNA, contig sequence: AoEST3178 Length = 1951 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 gccaaagatggcaaggtca 26 ||||||||||||||||||| Sbjct: 947 gccaaagatggcaaggtca 965
>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 Length = 1824958 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 gccaaagatggcaaggtca 26 ||||||||||||||||||| Sbjct: 1325666 gccaaagatggcaaggtca 1325648
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 6.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 93 gggctgctggcgaacggcaacttcgag 119 |||||| || ||||||||||||||||| Sbjct: 24178595 gggctgttgccgaacggcaacttcgag 24178621
>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E03 Length = 164839 Score = 38.2 bits (19), Expect = 6.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 93 gggctgctggcgaacggcaacttcgag 119 |||||| || ||||||||||||||||| Sbjct: 154417 gggctgttgccgaacggcaacttcgag 154443
>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046B10 Length = 142596 Score = 38.2 bits (19), Expect = 6.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 93 gggctgctggcgaacggcaacttcgag 119 |||||| || ||||||||||||||||| Sbjct: 3159 gggctgttgccgaacggcaacttcgag 3185
>ref|XM_311427.2| Anopheles gambiae str. PEST ENSANGP00000000575 (ENSANGG00000000521), partial mRNA Length = 3696 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 cgacctgcagattggcgct 79 ||||||||||||||||||| Sbjct: 319 cgacctgcagattggcgct 301
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 aaagatggcaaggtcagcc 29 ||||||||||||||||||| Sbjct: 4579168 aaagatggcaaggtcagcc 4579150 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 738,854 Number of Sequences: 3902068 Number of extensions: 738854 Number of successful extensions: 47714 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47544 Number of HSP's gapped (non-prelim): 170 length of query: 130 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 109 effective length of database: 17,151,101,840 effective search space: 1869470100560 effective search space used: 1869470100560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)