ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast01h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_464560.1| Oryza sativa (japonica cultivar-group), mRNA 72 4e-10
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 72 4e-10
3dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic D... 72 4e-10
4dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic D... 72 4e-10
5dbj|AK106819.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 4e-10
6ref|XM_473018.1| Oryza sativa (japonica cultivar-group), predic... 48 0.006
7dbj|AK072539.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.006
8dbj|AK063925.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.006
9ref|NM_192744.1| Oryza sativa (japonica cultivar-group), predic... 46 0.025
10dbj|AK105921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.025
11dbj|AK100501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.025
12dbj|AK072500.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.025
13dbj|AK060682.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.025
14ref|XM_473021.1| Oryza sativa (japonica cultivar-group), predic... 40 1.5
15ref|XM_752807.1| Ustilago maydis 521 hypothetical protein (UM017... 40 1.5
16dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
17emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4,... 40 1.5
18ref|XM_656421.1| Aspergillus nidulans FGSC A4 hypothetical prote... 38 6.1
19gb|AY597283.1| Pseudomonas viridiflava strain RMX3.1b pathogenic... 38 6.1
20dbj|AB226316.1| Aspergillus oryzae cDNA, contig sequence: AoEST3178 38 6.1
21dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 38 6.1
22dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.1
23dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic D... 38 6.1
24dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.1
25ref|XM_311427.2| Anopheles gambiae str. PEST ENSANGP00000000575 ... 38 6.1
26emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 38 6.1

>ref|XM_464560.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1499

 Score = 71.9 bits (36), Expect = 4e-10
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 93  gggctgctggcgaacggcaacttcgagcgcgggccg 128
           ||||||||||||||||||||||||||||||||||||
Sbjct: 239 gggctgctggcgaacggcaacttcgagcgcgggccg 274



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 71.9 bits (36), Expect = 4e-10
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                   
Query: 93      gggctgctggcgaacggcaacttcgagcgcgggccg 128
               ||||||||||||||||||||||||||||||||||||
Sbjct: 5913954 gggctgctggcgaacggcaacttcgagcgcgggccg 5913919



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>dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0056C19
          Length = 147739

 Score = 71.9 bits (36), Expect = 4e-10
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                 
Query: 93    gggctgctggcgaacggcaacttcgagcgcgggccg 128
             ||||||||||||||||||||||||||||||||||||
Sbjct: 92175 gggctgctggcgaacggcaacttcgagcgcgggccg 92140



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>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0544H11
          Length = 178376

 Score = 71.9 bits (36), Expect = 4e-10
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                  
Query: 93     gggctgctggcgaacggcaacttcgagcgcgggccg 128
              ||||||||||||||||||||||||||||||||||||
Sbjct: 143756 gggctgctggcgaacggcaacttcgagcgcgggccg 143721



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>dbj|AK106819.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D06, full
           insert sequence
          Length = 1498

 Score = 71.9 bits (36), Expect = 4e-10
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 93  gggctgctggcgaacggcaacttcgagcgcgggccg 128
           ||||||||||||||||||||||||||||||||||||
Sbjct: 239 gggctgctggcgaacggcaacttcgagcgcgggccg 274



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>ref|XM_473018.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1122

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 84  atcaccgatgggctgctggcgaacggcaacttcgag 119
           ||||||||||| |||||| |||| ||||||||||||
Sbjct: 76  atcaccgatggcctgctgccgaatggcaacttcgag 111



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>dbj|AK072539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133J23, full
           insert sequence
          Length = 1588

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 84  atcaccgatgggctgctggcgaacggcaacttcgag 119
           ||||||||||| |||||| |||| ||||||||||||
Sbjct: 480 atcaccgatggcctgctgccgaatggcaacttcgag 515



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>dbj|AK063925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C04, full
           insert sequence
          Length = 1517

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 84  atcaccgatgggctgctggcgaacggcaacttcgag 119
           ||||||||||| |||||| |||| ||||||||||||
Sbjct: 189 atcaccgatggcctgctgccgaatggcaacttcgag 224



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>ref|NM_192744.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1122

 Score = 46.1 bits (23), Expect = 0.025
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 85  tcaccgatgggctgctggcgaacggcaacttcgag 119
           ||||||| |||||| || |||||||||||||||||
Sbjct: 68  tcaccgacgggctgttgccgaacggcaacttcgag 102



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>dbj|AK105921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A04, full
           insert sequence
          Length = 1474

 Score = 46.1 bits (23), Expect = 0.025
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 85  tcaccgatgggctgctggcgaacggcaacttcgag 119
           ||||||| |||||| || |||||||||||||||||
Sbjct: 56  tcaccgacgggctgttgccgaacggcaacttcgag 90



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>dbj|AK100501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099J05, full
           insert sequence
          Length = 3062

 Score = 46.1 bits (23), Expect = 0.025
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 85  tcaccgatgggctgctggcgaacggcaacttcgag 119
           ||||||| |||||| || |||||||||||||||||
Sbjct: 185 tcaccgacgggctgttgccgaacggcaacttcgag 219



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>dbj|AK072500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H12, full
           insert sequence
          Length = 1690

 Score = 46.1 bits (23), Expect = 0.025
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 85  tcaccgatgggctgctggcgaacggcaacttcgag 119
           ||||||| |||||| || |||||||||||||||||
Sbjct: 185 tcaccgacgggctgttgccgaacggcaacttcgag 219



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>dbj|AK060682.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E10, full
           insert sequence
          Length = 1597

 Score = 46.1 bits (23), Expect = 0.025
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 85  tcaccgatgggctgctggcgaacggcaacttcgag 119
           ||||||| |||||| || |||||||||||||||||
Sbjct: 181 tcaccgacgggctgttgccgaacggcaacttcgag 215



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>ref|XM_473021.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 207

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 105 aacggcaacttcgagcgcgggccg 128
           |||||||||||||||| |||||||
Sbjct: 103 aacggcaacttcgagcacgggccg 126



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>ref|XM_752807.1| Ustilago maydis 521 hypothetical protein (UM01753.1) partial mRNA
          Length = 1020

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tggcaaggtcagccatgtccgggc 39
          ||||||||||||||| ||||||||
Sbjct: 70 tggcaaggtcagccaggtccgggc 93



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 105      aacggcaacttcgagcgcgggccg 128
                |||||||||||||||| |||||||
Sbjct: 24727202 aacggcaacttcgagcacgggccg 24727225



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>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11,
              complete sequence
          Length = 133856

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 105    aacggcaacttcgagcgcgggccg 128
              |||||||||||||||| |||||||
Sbjct: 116725 aacggcaacttcgagcacgggccg 116748



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>ref|XM_656421.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3909.2), mRNA
          Length = 3420

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 93   gggctgctggcgaacggca 111
            |||||||||||||||||||
Sbjct: 2484 gggctgctggcgaacggca 2466



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>gb|AY597283.1| Pseudomonas viridiflava strain RMX3.1b pathogenicity island
             PAI-Region-2, partial sequence
          Length = 39281

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 104   gaacggcaacttcgagcgc 122
             |||||||||||||||||||
Sbjct: 19083 gaacggcaacttcgagcgc 19101



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>dbj|AB226316.1| Aspergillus oryzae cDNA, contig sequence: AoEST3178
          Length = 1951

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 8   gccaaagatggcaaggtca 26
           |||||||||||||||||||
Sbjct: 947 gccaaagatggcaaggtca 965



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>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020
          Length = 1824958

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 8       gccaaagatggcaaggtca 26
               |||||||||||||||||||
Sbjct: 1325666 gccaaagatggcaaggtca 1325648



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                           
Query: 93       gggctgctggcgaacggcaacttcgag 119
                |||||| || |||||||||||||||||
Sbjct: 24178595 gggctgttgccgaacggcaacttcgag 24178621



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>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0410E03
          Length = 164839

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 93     gggctgctggcgaacggcaacttcgag 119
              |||||| || |||||||||||||||||
Sbjct: 154417 gggctgttgccgaacggcaacttcgag 154443



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>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0046B10
          Length = 142596

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 93   gggctgctggcgaacggcaacttcgag 119
            |||||| || |||||||||||||||||
Sbjct: 3159 gggctgttgccgaacggcaacttcgag 3185



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>ref|XM_311427.2| Anopheles gambiae str. PEST ENSANGP00000000575
           (ENSANGG00000000521), partial mRNA
          Length = 3696

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 61  cgacctgcagattggcgct 79
           |||||||||||||||||||
Sbjct: 319 cgacctgcagattggcgct 301



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 38.2 bits (19), Expect = 6.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 11      aaagatggcaaggtcagcc 29
               |||||||||||||||||||
Sbjct: 4579168 aaagatggcaaggtcagcc 4579150


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 738,854
Number of Sequences: 3902068
Number of extensions: 738854
Number of successful extensions: 47714
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47544
Number of HSP's gapped (non-prelim): 170
length of query: 130
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 109
effective length of database: 17,151,101,840
effective search space: 1869470100560
effective search space used: 1869470100560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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