>dbj|AK103718.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138A02, full
           insert sequence
          Length = 1385

 Score =  174 bits (88), Expect = 7e-41
 Identities = 106/112 (94%)
 Strand = Plus / Plus

                                                                       
Query: 87  gatggcgccgctcgtgccgccgtcacaaccatgggtggagaaataccggccgaggcaggt 146
           ||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||
Sbjct: 99  gatggcgccgctcgtgccgtcctcgcagccatgggtggagaaataccggccgaggcaggt 158

                                                               
Query: 147 gaaggacgtcgcgcaccaggaggaggtggtccgggtgctcaccaacaccctc 198
           |||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 159 gaaggatgtcgcgcaccaggaggaggtggtccgggtgctcaccaccaccctc 210

>dbj|AB045677.1| Oryza sativa (japonica cultivar-group) OsRFC2 mRNA for replication
           factor C 37 kDa subunit, complete cds
          Length = 1379

 Score =  174 bits (88), Expect = 7e-41
 Identities = 106/112 (94%)
 Strand = Plus / Plus

                                                                       
Query: 87  gatggcgccgctcgtgccgccgtcacaaccatgggtggagaaataccggccgaggcaggt 146
           ||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||
Sbjct: 123 gatggcgccgctcgtgccgtcctcgcagccatgggtggagaaataccggccgaggcaggt 182

                                                               
Query: 147 gaaggacgtcgcgcaccaggaggaggtggtccgggtgctcaccaacaccctc 198
           |||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 183 gaaggatgtcgcgcaccaggaggaggtggtccgggtgctcaccaccaccctc 234

>gb|AY105337.1| Zea mays PCO072101 mRNA sequence
          Length = 1550

 Score =  127 bits (64), Expect = 1e-26
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                       
Query: 87  gatggcgccgctcgtgccgccgtcacaaccatgggtggagaaataccggccgaggcaggt 146
           |||||| ||||||||||||  ||| || ||||||||||||||||||||||||||||||||
Sbjct: 142 gatggccccgctcgtgccgatgtcgcagccatgggtggagaaataccggccgaggcaggt 201

                                                               
Query: 147 gaaggacgtcgcgcaccaggaggaggtggtccgggtgctcaccaacaccctc 198
            ||||| || || ||||||||||||||| | |||||||||| ||||||||||
Sbjct: 202 caaggatgtggctcaccaggaggaggtgattcgggtgctcaacaacaccctc 253

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  117 bits (59), Expect = 1e-23
 Identities = 65/67 (97%)
 Strand = Plus / Plus

                                                                           
Query: 132     ccggccgaggcaggtgaaggacgtcgcgcaccaggaggaggtggtccgggtgctcaccaa 191
               ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 3872663 ccggccgaggcaggtgaaggatgtcgcgcaccaggaggaggtggtccgggtgctcaccac 3872722

                      
Query: 192     caccctc 198
               |||||||
Sbjct: 3872723 caccctc 3872729



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                            
Query: 87      gatggcgccgctcgtgccgccgtcacaaccatgggtggagaaata 131
               ||||||||||||||||||| | || || |||||||||||||||||
Sbjct: 3872494 gatggcgccgctcgtgccgtcctcgcagccatgggtggagaaata 3872538



 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 77       aaggaggagagatggcgccg 96
                ||||||||||||||||||||
Sbjct: 22490927 aaggaggagagatggcgccg 22490908

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  117 bits (59), Expect = 1e-23
 Identities = 65/67 (97%)
 Strand = Plus / Plus

                                                                           
Query: 132     ccggccgaggcaggtgaaggacgtcgcgcaccaggaggaggtggtccgggtgctcaccaa 191
               ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 3872637 ccggccgaggcaggtgaaggatgtcgcgcaccaggaggaggtggtccgggtgctcaccac 3872696

                      
Query: 192     caccctc 198
               |||||||
Sbjct: 3872697 caccctc 3872703



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                            
Query: 87      gatggcgccgctcgtgccgccgtcacaaccatgggtggagaaata 131
               ||||||||||||||||||| | || || |||||||||||||||||
Sbjct: 3872468 gatggcgccgctcgtgccgtcctcgcagccatgggtggagaaata 3872512



 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 77       aaggaggagagatggcgccg 96
                ||||||||||||||||||||
Sbjct: 22419272 aaggaggagagatggcgccg 22419253

>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152090

 Score =  117 bits (59), Expect = 1e-23
 Identities = 65/67 (97%)
 Strand = Plus / Plus

                                                                         
Query: 132   ccggccgaggcaggtgaaggacgtcgcgcaccaggaggaggtggtccgggtgctcaccaa 191
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct: 34639 ccggccgaggcaggtgaaggatgtcgcgcaccaggaggaggtggtccgggtgctcaccac 34698

                    
Query: 192   caccctc 198
             |||||||
Sbjct: 34699 caccctc 34705



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                          
Query: 87    gatggcgccgctcgtgccgccgtcacaaccatgggtggagaaata 131
             ||||||||||||||||||| | || || |||||||||||||||||
Sbjct: 34470 gatggcgccgctcgtgccgtcctcgcagccatgggtggagaaata 34514

>ref|NM_102018.2| Arabidopsis thaliana EMB1968; ATP binding / ATPase/ DNA binding /
           nucleoside-triphosphatase/ nucleotide binding AT1G21690
           (EMB1968) transcript variant AT1G21690.1 mRNA, complete
           cds
          Length = 1294

 Score = 91.7 bits (46), Expect = 8e-16
 Identities = 76/86 (88%)
 Strand = Plus / Plus

                                                                       
Query: 109 tcacaaccatgggtggagaaataccggccgaggcaggtgaaggacgtcgcgcaccaggag 168
           ||||| |||||||| |||||||||||||||| |||||| |||||||| || |||||||| 
Sbjct: 53  tcacagccatgggttgagaaataccggccgaagcaggttaaggacgtggctcaccaggaa 112

                                     
Query: 169 gaggtggtccgggtgctcaccaacac 194
           |||||||| || || |||||||||||
Sbjct: 113 gaggtggttcgtgtcctcaccaacac 138

>gb|BT010368.1| Arabidopsis thaliana At1g21690 mRNA, complete cds
          Length = 1020

 Score = 91.7 bits (46), Expect = 8e-16
 Identities = 76/86 (88%)
 Strand = Plus / Plus

                                                                       
Query: 109 tcacaaccatgggtggagaaataccggccgaggcaggtgaaggacgtcgcgcaccaggag 168
           ||||| |||||||| |||||||||||||||| |||||| |||||||| || |||||||| 
Sbjct: 22  tcacagccatgggttgagaaataccggccgaagcaggttaaggacgtggctcaccaggaa 81

                                     
Query: 169 gaggtggtccgggtgctcaccaacac 194
           |||||||| || || |||||||||||
Sbjct: 82  gaggtggttcgtgtcctcaccaacac 107

>gb|AY056210.1| Arabidopsis thaliana putative replication factor (At1g21690) mRNA,
           complete cds
          Length = 1313

 Score = 91.7 bits (46), Expect = 8e-16
 Identities = 76/86 (88%)
 Strand = Plus / Plus

                                                                       
Query: 109 tcacaaccatgggtggagaaataccggccgaggcaggtgaaggacgtcgcgcaccaggag 168
           ||||| |||||||| |||||||||||||||| |||||| |||||||| || |||||||| 
Sbjct: 53  tcacagccatgggttgagaaataccggccgaagcaggttaaggacgtggctcaccaggaa 112

                                     
Query: 169 gaggtggtccgggtgctcaccaacac 194
           |||||||| || || |||||||||||
Sbjct: 113 gaggtggttcgtgtcctcaccaacac 138

>gb|AY062637.1| Arabidopsis thaliana Similar replication factor C, 37-kDa subunit
           (At1g21690; F8K7.11) mRNA, complete cds
          Length = 1214

 Score = 91.7 bits (46), Expect = 8e-16
 Identities = 76/86 (88%)
 Strand = Plus / Plus

                                                                       
Query: 109 tcacaaccatgggtggagaaataccggccgaggcaggtgaaggacgtcgcgcaccaggag 168
           ||||| |||||||| |||||||||||||||| |||||| |||||||| || |||||||| 
Sbjct: 53  tcacagccatgggttgagaaataccggccgaagcaggttaaggacgtggctcaccaggaa 112

                                     
Query: 169 gaggtggtccgggtgctcaccaacac 194
           |||||||| || || |||||||||||
Sbjct: 113 gaggtggttcgtgtcctcaccaacac 138

>gb|AY084702.1| Arabidopsis thaliana clone 115488 mRNA, complete sequence
          Length = 1184

 Score = 91.7 bits (46), Expect = 8e-16
 Identities = 76/86 (88%)
 Strand = Plus / Plus

                                                                       
Query: 109 tcacaaccatgggtggagaaataccggccgaggcaggtgaaggacgtcgcgcaccaggag 168
           ||||| |||||||| |||||||||||||||| |||||| |||||||| || |||||||| 
Sbjct: 52  tcacagccatgggttgagaaataccggccgaagcaggttaaggacgtggctcaccaggaa 111

                                     
Query: 169 gaggtggtccgggtgctcaccaacac 194
           |||||||| || || |||||||||||
Sbjct: 112 gaggtggttcgtgtcctcaccaacac 137

>ref|NM_179364.1| Arabidopsis thaliana EMB1968; ATP binding / ATPase/ DNA binding /
           nucleoside-triphosphatase/ nucleotide binding AT1G21690
           (EMB1968) transcript variant AT1G21690.2 mRNA, complete
           cds
          Length = 1258

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                       
Query: 109 tcacaaccatgggtggagaaataccggccgaggcaggtgaaggacgtcgcgcaccaggag 168
           ||||| |||||||| |||||||||||||||| |||||| |||||||| || |||||||| 
Sbjct: 53  tcacagccatgggttgagaaataccggccgaagcaggttaaggacgtggctcaccaggaa 112

                 
Query: 169 gaggtg 174
           ||||||
Sbjct: 113 gaggtg 118

>gb|AC007727.2|F8K7 Arabidopsis thaliana chromosome 1 BAC F8K7 sequence, complete sequence
          Length = 98581

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                         
Query: 132   ccggccgaggcaggtgaaggacgtcgcgcaccaggaggaggtggtccgggtgctcaccaa 191
             |||||||| |||||| |||||||| || |||||||| |||||||| || || ||||||||
Sbjct: 45047 ccggccgaagcaggttaaggacgtggctcaccaggaagaggtggttcgtgtcctcaccaa 45106

                
Query: 192   cac 194
             |||
Sbjct: 45107 cac 45109

>ref|NM_104994.2| Arabidopsis thaliana ATP binding / ATPase/ DNA binding /
           nucleoside-triphosphatase/ nucleotide binding AT1G63160
           mRNA, complete cds
          Length = 1248

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 113 aaccatgggtggagaaataccggccgag 140
           |||||||||||||||||||| |||||||
Sbjct: 86  aaccatgggtggagaaatacaggccgag 113

>emb|BX813429.1|CNS0ADU1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB17ZA06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1224

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 113 aaccatgggtggagaaataccggccgag 140
           |||||||||||||||||||| |||||||
Sbjct: 86  aaccatgggtggagaaatacaggccgag 113

>emb|BX816906.1|CNS0AD5X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH75ZF09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1175

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 113 aaccatgggtggagaaataccggccgag 140
           |||||||||||||||||||| |||||||
Sbjct: 66  aaccatgggtggagaaatacaggccgag 93

>gb|AC010795.5|AC010795 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete
             sequence
          Length = 100512

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 113   aaccatgggtggagaaataccggccgag 140
             |||||||||||||||||||| |||||||
Sbjct: 74955 aaccatgggtggagaaatacaggccgag 74928

>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 46.1 bits (23), Expect = 0.042
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 160     caccaggaggaggtggtccgggtgctc 186
               |||||||||||||||| ||||||||||
Sbjct: 1067013 caccaggaggaggtggaccgggtgctc 1066987

>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 46.1 bits (23), Expect = 0.042
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 160    caccaggaggaggtggtccgggtgctc 186
              |||||||||||||||| ||||||||||
Sbjct: 739991 caccaggaggaggtggaccgggtgctc 739965

>ref|XM_474873.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2859

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 168 ggaggtggtccgggtgctcacc 189
           ||||||||||||||||||||||
Sbjct: 624 ggaggtggtccgggtgctcacc 645

>emb|AL662982.3|OSJN00184 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083I11,
              complete sequence
          Length = 149085

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 168    ggaggtggtccgggtgctcacc 189
              ||||||||||||||||||||||
Sbjct: 113008 ggaggtggtccgggtgctcacc 113029

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 168     ggaggtggtccgggtgctcacc 189
               ||||||||||||||||||||||
Sbjct: 7466655 ggaggtggtccgggtgctcacc 7466676

>gb|DQ440403.1| Aedes aegypti clone AET-538 replication factor C mRNA, partial cds
          Length = 1074

 Score = 42.1 bits (21), Expect = 0.65
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 115 ccatgggtggagaaataccggccga 139
           |||||||| ||||||||||||||||
Sbjct: 100 ccatgggtcgagaaataccggccga 124

>emb|CR938510.1| Single read from an extremity of a full-length cDNA clone made from
           Aedes aegypti total adult females. 5-prime end of clone
           KW0AAA1YK14AAM1 from strain Liverpool of Aedes aegypti
           (yellow fever mosquito)
          Length = 582

 Score = 42.1 bits (21), Expect = 0.65
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 115 ccatgggtggagaaataccggccga 139
           |||||||| ||||||||||||||||
Sbjct: 248 ccatgggtcgagaaataccggccga 272

>gb|AY069598.1| Drosophila melanogaster LD35209 full insert cDNA
          Length = 1174

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 tgggtggagaaataccggcc 137
           ||||||||||||||||||||
Sbjct: 110 tgggtggagaaataccggcc 129

>ref|NM_133017.2| Drosophila melanogaster CG8142-RA (CG8142), mRNA
          Length = 1190

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 tgggtggagaaataccggcc 137
           ||||||||||||||||||||
Sbjct: 145 tgggtggagaaataccggcc 164

>dbj|AK131773.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:1700103L20 product:unclassifiable, full
           insert sequence
          Length = 1251

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 gcaccaggaggaggtggtcc 178
           ||||||||||||||||||||
Sbjct: 225 gcaccaggaggaggtggtcc 244

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 10       gccgccgcccgccggtcgcc 29
                ||||||||||||||||||||
Sbjct: 17183020 gccgccgcccgccggtcgcc 17183001

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 10       gccgccgcccgccggtcgcc 29
                ||||||||||||||||||||
Sbjct: 10664345 gccgccgcccgccggtcgcc 10664326

>dbj|AP003522.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0036B02
          Length = 168253

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    gccgccgcccgccggtcgcc 29
             ||||||||||||||||||||
Sbjct: 17408 gccgccgcccgccggtcgcc 17389

>gb|AY103675.1| Zea mays PCO125717 mRNA sequence
          Length = 1581

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 4  aaccgagccgccgcccgccg 23
          ||||||||||||||||||||
Sbjct: 62 aaccgagccgccgcccgccg 43

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 10       gccgccgcccgccggtcgcc 29
                ||||||||||||||||||||
Sbjct: 17278206 gccgccgcccgccggtcgcc 17278187

>emb|AL732640.4|CNS08C9F Oryza sativa chromosome 12, . BAC OSJNBa0022K16 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 183414

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    aaggaggagagatggcgccg 96
             ||||||||||||||||||||
Sbjct: 16607 aaggaggagagatggcgccg 16626

>emb|AL583884.20| Mouse DNA sequence from clone RP23-324B16 on chromosome 15, complete
              sequence
          Length = 202342

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    gcaccaggaggaggtggtcc 178
              ||||||||||||||||||||
Sbjct: 116536 gcaccaggaggaggtggtcc 116555


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,915,652
Number of Sequences: 3902068
Number of extensions: 1915652
Number of successful extensions: 176068
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 174984
Number of HSP's gapped (non-prelim): 1084
length of query: 204
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 182
effective length of database: 17,147,199,772
effective search space: 3120790358504
effective search space used: 3120790358504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)