ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast01h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADA2C_RAT (P22086) Alpha-2C adrenergic receptor (Alpha-2C adreno... 29 4.1
2ADA2C_MOUSE (Q01337) Alpha-2C adrenergic receptor (Alpha-2C adre... 29 4.1
3ADA2C_HUMAN (P18825) Alpha-2C adrenergic receptor (Alpha-2C adre... 29 4.1
4ADA2C_CAVPO (Q60476) Alpha-2C adrenergic receptor (Alpha-2C adre... 29 4.1

>ADA2C_RAT (P22086) Alpha-2C adrenergic receptor (Alpha-2C adrenoceptor)|
           (Alpha-2C adrenoreceptor) (Alpha-2 adrenergic receptor
           subtype C4)
          Length = 458

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 137 RSPPCSRRTASAPSWTAPLLLDQLASVRQSLCQRRIGQSKGKQST 3
           RSP    R + A S +    L +    R S+C+R++ Q++ K+ T
Sbjct: 333 RSPGPGGRLSRASSRSVEFFLSRRRRARSSVCRRKVAQAREKRFT 377



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>ADA2C_MOUSE (Q01337) Alpha-2C adrenergic receptor (Alpha-2C adrenoceptor)|
           (Alpha-2C adrenoreceptor) (Alpha-2 adrenergic receptor
           subtype C4)
          Length = 458

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 137 RSPPCSRRTASAPSWTAPLLLDQLASVRQSLCQRRIGQSKGKQST 3
           RSP    R + A S +    L +    R S+C+R++ Q++ K+ T
Sbjct: 333 RSPGPGGRLSRASSRSVEFFLSRRRRARSSVCRRKVAQAREKRFT 377



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>ADA2C_HUMAN (P18825) Alpha-2C adrenergic receptor (Alpha-2C adrenoceptor)|
           (Alpha-2C adrenoreceptor) (Alpha-2 adrenergic receptor
           subtype C4)
          Length = 462

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 137 RSPPCSRRTASAPSWTAPLLLDQLASVRQSLCQRRIGQSKGKQST 3
           RSP    R + A S +    L +    R S+C+R++ Q++ K+ T
Sbjct: 337 RSPGPGGRLSRASSRSVEFFLSRRRRARSSVCRRKVAQAREKRFT 381



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>ADA2C_CAVPO (Q60476) Alpha-2C adrenergic receptor (Alpha-2C adrenoceptor)|
           (Alpha-2C adrenoreceptor)
          Length = 455

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 137 RSPPCSRRTASAPSWTAPLLLDQLASVRQSLCQRRIGQSKGKQST 3
           RSP    R + A S +    L +    R S+C+R++ Q++ K+ T
Sbjct: 330 RSPGPGGRLSRASSRSVEFFLSRRRRARSSVCRRKVAQAREKRFT 374


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,076,195
Number of Sequences: 219361
Number of extensions: 189861
Number of successful extensions: 796
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 80,573,946
effective HSP length: 21
effective length of database: 75,967,365
effective search space used: 1823216760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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