Clone Information

BLAST Search Result

Clone Name	bast01e09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	IF2_CHRVO (Q7NY13) Translation initiation factor IF-2	36	0.037
2	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	30	0.077
3	M3K12_HUMAN (Q12852) Mitogen-activated protein kinase kinase kin...	35	0.11
4	CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain	28	0.59
5	M3K12_RAT (Q63796) Mitogen-activated protein kinase kinase kinas...	32	0.70
6	M3K12_MOUSE (Q60700) Mitogen-activated protein kinase kinase kin...	32	0.70
7	KPC1_ASPNG (Q00078) Protein kinase C-like (EC 2.7.11.13)	32	0.91
8	TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DN...	31	1.2
9	CLIC6_HUMAN (Q96NY7) Chloride intracellular channel 6	31	1.2
10	CL43_BOVIN (P42916) Collectin-43 precursor (CL-43) (43 kDa colle...	31	1.6
11	PGK_MYCAV (O32848) Phosphoglycerate kinase (EC 2.7.2.3) (Fragment)	31	1.6
12	COL40_CAEEL (P34804) Cuticle collagen 40	31	1.6
13	HMGN2_MOUSE (P09602) Nonhistone chromosomal protein HMG-17 (High...	30	2.0
14	VNUA_PRVKA (P33485) Probable nuclear antigen	30	2.0
15	PHC1_HUMAN (P78364) Polyhomeotic-like protein 1 (hPH1) (Early de...	30	2.7
16	OSS2_PEA (P17772) Organ-specific protein S2	30	2.7
17	MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [C...	30	3.5
18	TRSF_DROVI (Q24761) Female-specific protein transformer	30	3.5
19	SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inosit...	30	3.5
20	SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic inos...	30	3.5
21	PDE4A_RAT (P54748) cAMP-specific 3',5'-cyclic phosphodiesterase ...	30	3.5
22	UL06_HHV11 (P10190) Virion protein UL6	29	4.5
23	CO4A6_HUMAN (Q14031) Collagen alpha-6(IV) chain precursor	29	4.5
24	IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2	29	4.5
25	THIC_BACCR (Q815D5) Thiamine biosynthesis protein thiC	29	4.5
26	PKHG4_HUMAN (Q58EX7) Puratrophin-1 (Pleckstrin homology domain-c...	29	4.5
27	HMGN2_PIG (P80272) Nonhistone chromosomal protein HMG-17 (High-m...	29	4.5
28	HMGN2_GECJA (Q64FT8) Nonhistone chromosomal protein HMG-17 (High...	29	4.5
29	HMGN2_CHICK (P02314) Nonhistone chromosomal protein HMG-17 (High...	29	4.5
30	HMGN2_CANFA (Q711A6) Nonhistone chromosomal protein HMG-17 (High...	29	4.5
31	FGF5_RAT (P48807) Fibroblast growth factor 5 precursor (FGF-5) (...	29	5.9
32	FGF5_MOUSE (P15656) Fibroblast growth factor 5 precursor (FGF-5)...	29	5.9
33	CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor	29	5.9
34	CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor	29	5.9
35	YBX2A_XENLA (P21574) Y-box-binding protein 2-A (Cytoplasmic RNA-...	29	5.9
36	WOX11_ARATH (Q6X7J3) WUSCHEL-related homeobox 11	29	5.9
37	B2L13_MOUSE (P59017) Bcl-2-like 13 protein (Mil1 protein) (Bcl-r...	29	5.9
38	CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodp...	29	5.9
39	MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1	28	7.7
40	CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor	28	7.7
41	PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-bi...	28	7.7
42	EL5_ORYSA (Q9LRB7) E3 ubiquitin ligase EL5 (EC 6.3.2.-)	28	7.7
43	UBP8_HUMAN (P40818) Ubiquitin carboxyl-terminal hydrolase 8 (EC ...	28	7.7
44	ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219	28	7.7
45	STRN3_RAT (P58405) Striatin-3 (Cell-cycle autoantigen SG2NA) (S/...	28	7.7
46	MYB3_HORVU (P20027) Myb-related protein Hv33	28	7.7
47	OST6_MOUSE (Q5GFD5) Heparan sulfate glucosamine 3-O-sulfotransfe...	28	7.7
48	MRCKG_HUMAN (Q6DT37) Serine/threonine-protein kinase MRCK gamma ...	28	7.7
49	DIDO1_MOUSE (Q8C9B9) Death-inducer obliterator 1 (DIO-1) (Death-...	28	7.7

>IF2_CHRVO (Q7NY13) Translation initiation factor IF-2|
          Length = 964

 Score = 36.2 bits (82), Expect = 0.037
 Identities = 28/89 (31%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
 Frame = -3

Query: 436 GVLGRHRRAVPADAAGGHGRRPQAKRWSVRPSGEGDPGPGPQRGFGERRG--PCGV*SXX 263
           G  G   R      AG  G RP       RP+G GD GP P    G+ RG  P G     
Sbjct: 244 GPRGNDNRGPRPAGAGDRGPRPGGDNRGPRPAGAGDRGPRPG---GDNRGPRPAGAGDRG 300

Query: 262 XXXXXXXXXXXXELAVGAKSSRPGPGNSG 176
                         A     SRPG G  G
Sbjct: 301 PRPAPAAAAPSQPPAPAPGGSRPGKGKKG 329

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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 30.0 bits (66), Expect(2) = 0.077
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 444  GTVESSGAIGEPFPPTPL--AAMAGDLRRSDGPYGRAGKATPA 322
            G+  + GA G P PP P+  A  +GD R   GP G AG   PA
Sbjct: 1038 GSPGAPGAPGHPGPPGPVGPAGKSGD-RGESGPAGPAGAPGPA 1079



 Score = 23.9 bits (50), Expect(2) = 0.077
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 346  PSGEGDPGPGPQRGFGERRGPCG 278
            P   G PGP  Q+G     GP G
Sbjct: 1115 PGAPGSPGPAGQQGAIGSPGPAG 1137

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>M3K12_HUMAN (Q12852) Mitogen-activated protein kinase kinase kinase 12 (EC|
           2.7.11.25) (Mixed lineage kinase) (Leucine-zipper
           protein kinase) (ZPK) (Dual leucine zipper bearing
           kinase) (DLK) (MAPK-upstream kinase) (MUK)
          Length = 859

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
 Frame = -1

Query: 426 GAIGEPFPPTPLAAMAGDLRRS-DGPYGRAGKA------TPAPDL-SGDLGNGEARAECS 271
           GA GEP PP       G L    +G  GR G        TPA  L    +   + R   S
Sbjct: 660 GAKGEPPPPVGPGEGVGLLGTGREGTSGRGGSRAGSQHLTPAALLYRAAVTRSQKRGISS 719

Query: 270 RESEGERDGAVVISESSRWARS 205
            E EGE D  V ++ S RW +S
Sbjct: 720 EEEEGEVDSEVELTSSQRWPQS 741

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>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 28.5 bits (62), Expect(2) = 0.59
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 444  GTVESSGAIGEPFPPTPL--AAMAGDLRRSDGPYGRAGKATPA 322
            G+  + GA G P PP P+  A  +GD R   GP G +G   PA
Sbjct: 882  GSPGAPGAPGHPGPPGPVGPAGKSGD-RGETGPAGPSGAPGPA 923



 Score = 22.3 bits (46), Expect(2) = 0.59
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -3

Query: 346  PSGEGDPGPGPQRGFGERRGPCG 278
            P   G PGP   +G     GP G
Sbjct: 959  PGAPGSPGPAGHQGAVGSPGPAG 981

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>M3K12_RAT (Q63796) Mitogen-activated protein kinase kinase kinase 12 (EC|
           2.7.11.25) (Mixed lineage kinase) (Leucine-zipper
           protein kinase) (ZPK) (Dual leucine zipper bearing
           kinase) (DLK) (MAPK-upstream kinase) (MUK)
          Length = 888

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 28/79 (35%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
 Frame = -1

Query: 426 GAIGEPFPPTPLAAMAGDLRRS-DGPYGRAGKA------TPAPDL-SGDLGNGEARAECS 271
           GA GEP PP       G L    +G  GR G        TPA  L    +   + R   S
Sbjct: 693 GAKGEPPPPVGPGEGVGLLGTGREGTTGRGGSRAGYQHLTPAALLYRAAVTRSQKRGISS 752

Query: 270 RESEGERDGAVVISESSRW 214
            E EGE D  V +  S RW
Sbjct: 753 EEEEGEVDSEVELPPSQRW 771

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>M3K12_MOUSE (Q60700) Mitogen-activated protein kinase kinase kinase 12 (EC|
           2.7.11.25) (Mixed lineage kinase) (Leucine-zipper
           protein kinase) (ZPK) (Dual leucine zipper bearing
           kinase) (DLK) (MAPK-upstream kinase) (MUK)
          Length = 888

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 28/79 (35%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
 Frame = -1

Query: 426 GAIGEPFPPTPLAAMAGDLRRS-DGPYGRAGKA------TPAPDL-SGDLGNGEARAECS 271
           GA GEP PP       G L    +G  GR G        TPA  L    +   + R   S
Sbjct: 693 GAKGEPPPPVGPGEGVGLLGTGREGTAGRGGNRAGSQHLTPAALLYRAAVTRSQKRGISS 752

Query: 270 RESEGERDGAVVISESSRW 214
            E EGE D  V +  S RW
Sbjct: 753 EEEEGEVDSEVELPPSQRW 771

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>KPC1_ASPNG (Q00078) Protein kinase C-like (EC 2.7.11.13)|
          Length = 1096

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = -3

Query: 442 HCGVLGRHRRAVPADAAGGHGRRPQAKRWSVRPSGEGDPGPGPQRGFGE 296
           H G  GR       D AGG G        S  PSG G PG  P +G+G+
Sbjct: 362 HGGAPGR------PDTAGGAG--------SAHPSGPGGPGAAPSQGYGD 396

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>TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase|
           III alpha)
          Length = 1250

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -3

Query: 406 PADAAGGHGRRPQAKRWSVRPSGEGDPGPGPQRGFGERRGPCG 278
           P    GG GR   +  WS  P G G  G G   G+G   G  G
Sbjct: 777 PGPGGGGSGRGAGSGGWSSGPGGGGSGGGGGSGGWGSGTGGGG 819

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>CLIC6_HUMAN (Q96NY7) Chloride intracellular channel 6|
          Length = 704

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -1

Query: 381 AGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERDG 244
           AGD   ++GP GRA + +  P  SGD G+   +AE    + GE  G
Sbjct: 276 AGDSMDAEGPAGRARRVSGEPQQSGD-GSLSPQAEAIEVAAGESAG 320

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>CL43_BOVIN (P42916) Collectin-43 precursor (CL-43) (43 kDa collectin)|
          Length = 321

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 412 AVPADAAGGHGRRPQAKRWSVRPSGE-GDPGPGPQRGFGERRGPCG 278
           A PAD+  GH  R   +     P GE GDPGP    G   R GP G
Sbjct: 41  APPADSLRGHDGRDGKEG----PQGEKGDPGPPGMPGPAGREGPSG 82

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>PGK_MYCAV (O32848) Phosphoglycerate kinase (EC 2.7.2.3) (Fragment)|
          Length = 388

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -3

Query: 412 AVPADAAGGHGRRPQAKRWSVRPSGEGDPG---PGPQRGFGERRGP 284
           A P   AG  GRR +      R +G G  G   PGP+RG   RR P
Sbjct: 74  AGPGVVAGPGGRRARRAAGPARAAGLGRGGHRRPGPRRGVDRRRRP 119

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>COL40_CAEEL (P34804) Cuticle collagen 40|
          Length = 306

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -1

Query: 444 GTVESSGAIGEPFPPTPLAAMAGDLRRSDGPYGRAGKATP--APDLSGDLG-NGEARA 280
           GT   +GA G P PP P            GP G AG A P  AP  +G  G  GEA A
Sbjct: 230 GTPGPAGAAGPPGPPGPAGNPGSAGASEPGPAGPAGDAGPDGAPGNAGAPGAPGEAGA 287

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>HMGN2_MOUSE (P09602) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERD 247
           P  P P    A   +    P G+ GKA    D +    NG+A+ + ++++EG  D
Sbjct: 33  PPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAENGDAKTDQAQKAEGAGD 87

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>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
 Frame = -3

Query: 403  ADAAGGHGRRPQAKRWSVRP---------SGEGDPGPGPQRGFGE 296
            A  AGG  RR + +RW             +G G  GPGP+ G GE
Sbjct: 998  AGEAGGGARRRRRRRWDDEAGLLGPERGQAGRGLRGPGPRGGLGE 1042

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>PHC1_HUMAN (P78364) Polyhomeotic-like protein 1 (hPH1) (Early development|
           regulatory protein 1)
          Length = 1004

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +1

Query: 169 QPCPNFPVQACSTSRPPRA------LADDHRAVPLSLALPTTLRTG 288
           QP P+ PVQ   T +P  A      LA    AVP S  +P T+++G
Sbjct: 520 QPPPHIPVQVVGTRQPGTAQAQALGLAQLAAAVPTSRGMPGTVQSG 565

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>OSS2_PEA (P17772) Organ-specific protein S2|
          Length = 181

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -1

Query: 435 ESSGAIGEPFPPTPLAAMAGDLR-RSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESE 259
           E+ GAIGE F P P A+  GD    ++   G +G+  P P++S   G+ E  A  ++ + 
Sbjct: 88  ENMGAIGE-FEPRPNASAYGDNEIHANENKGASGEFEPRPNISA-YGDNEIHANENKGAI 145

Query: 258 GE 253
           GE
Sbjct: 146 GE 147



 Score = 29.6 bits (65), Expect = 3.5
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 435 ESSGAIGEPFPPTPLAAMAGDLR-RSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESE 259
           E+ GAIGE F P P A+  GD    +    G  G+  P P+ S   G+ E  A  ++ + 
Sbjct: 62  ENMGAIGE-FEPRPYASAYGDNEIHAKENMGAIGEFEPRPNASA-YGDNEIHANENKGAS 119

Query: 258 GE 253
           GE
Sbjct: 120 GE 121

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>MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1|
            light chain LC2]
          Length = 2774

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 411  PFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNG--EARAECSRE 265
            P  P P A++  DL  +  P        PAP L GDLG+G    R EC+ E
Sbjct: 2274 PLSPAPSASL--DLAPAPAP-----APAPAPGLPGDLGDGTLPCRPECTGE 2317

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>TRSF_DROVI (Q24761) Female-specific protein transformer|
          Length = 199

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
 Frame = +1

Query: 190 VQACSTSRPPRA-------------LADDHRAVPLSLALPTTLRTGLSVPQIPAEVRGRG 330
           + A S+SR PR               AD+ R       LP    T    P  P E R R 
Sbjct: 1   MDADSSSRSPRDTRRRSRQREKMPYFADEVRERDRVRNLPKLKTTQKRTPTPPRERRSRH 60

Query: 331 RLPRSAVRTIASPEVACHGRQRRRRERLSDGAR 429
             PRS  RT +  +  C  R  R   R   G+R
Sbjct: 61  ERPRSRSRTHSPEQSRCQRRLSRSYVRHRSGSR 93

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>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = +2

Query: 299  PKSPLRSGAGVAFPARPYGPSLRLRSPAMAASGVGGNGSPMAP 427
            P  P+   A  A P RP  PS   RSPA A    GG G+P +P
Sbjct: 1107 PPRPVAPPARPAPPQRPPPPS-GARSPAPARKEFGGVGAPPSP 1148

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>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1574

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = +2

Query: 299  PKSPLRSGAGVAFPARPYGPSLRLRSPAMAASGVGGNGSPMAP 427
            P  P+   A  A P RP  PS   RSPA A    GG G+P +P
Sbjct: 1107 PPRPVAPPARPAPPQRPPPPS-GARSPAPARKEFGGVGAPPSP 1148

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>PDE4A_RAT (P54748) cAMP-specific 3',5'-cyclic phosphodiesterase 4A (EC|
           3.1.4.17) (DPDE2)
          Length = 844

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -1

Query: 435 ESSGAIGEPFPP-TPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESE 259
           ES  A+G  F P TP+      L  S+   G  G  + A ++     +  A   CS  S 
Sbjct: 763 ESMEAVGCSFSPGTPILPDVRTLSSSEEAPGLLGLPSTAAEVEAPRDHLAATRACSACSG 822

Query: 258 GERDGAVVISESSRW 214
              D + +IS   RW
Sbjct: 823 TSGDNSAIISAPGRW 837

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>UL06_HHV11 (P10190) Virion protein UL6|
          Length = 676

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGKATP------APDLSGDLGNGEARAECSR 268
           P PP+P+ A   D R    P GR+   +P      APD  G +G+ + R +  R
Sbjct: 626 PPPPSPVGA---DFRPGASPRGRSRSRSPGRTARGAPDQGGGIGHRDGRRDGRR 676

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>CO4A6_HUMAN (Q14031) Collagen alpha-6(IV) chain precursor|
          Length = 1691

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -1

Query: 444 GTVESSGAIGEPFPPTP--LAAMAGDLRRSDGPYGRAGKATP--APDLSGDLG 298
           G V ++G  GEP PP P  L  + G L+ + G  G  G   P  AP L G LG
Sbjct: 486 GGVPNTGPPGEPGPPGPWGLIGLPG-LKGARGDRGSGGAQGPAGAPGLVGPLG 537

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>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2|
          Length = 1033

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = -3

Query: 403 ADAAGGHGRRPQAKRWSVRPSGEGDPGPGPQRGFGERRGPCG 278
           A   GG G RP    ++ RP G G   PG   GF  R G  G
Sbjct: 328 AGRPGGGGGRPGGGGFAGRPGGGGGGRPGGGGGFAGRPGGGG 369

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>THIC_BACCR (Q815D5) Thiamine biosynthesis protein thiC|
          Length = 586

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -1

Query: 438 VESSGAIGEPFPPTPLAAMAGDLRRSDGPYG-RAGKATPAPDLSGDLGNGEARAECSRES 262
           +E S   G P PP  +   +G    +D  Y     K  P P  S  LG G+  A   RE 
Sbjct: 38  IEQSETNGVPNPPIRVYDTSGPY--TDPEYKVELEKGIPTPRHSWILGRGDVEAYEGREV 95

Query: 261 EGERDGAVVISE 226
           + E DG  V S+
Sbjct: 96  KPEDDGVKVASK 107

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>PKHG4_HUMAN (Q58EX7) Puratrophin-1 (Pleckstrin homology domain-containing|
           family G member 4) (Purkinje cell atrophy-associated
           protein 1)
          Length = 1191

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = -1

Query: 420 IGEPFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEG 256
           + +P PP P A    D      P  R  +  PA D SGD   G   +  S  SEG
Sbjct: 43  VKDPGPPRPPAGATQDEELQGSPLSRKFQLPPAADESGDAQRGTVESS-SVLSEG 96

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>HMGN2_PIG (P80272) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERD 247
           P  P P    A   +    P G+ GKA    D +    NG+A+ + ++++EG  D
Sbjct: 33  PPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDGNNPAENGDAKTDQAQKAEGAGD 87

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>HMGN2_GECJA (Q64FT8) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERD 247
           P  P P    A   +    P G+ GKA    D +    NG+A+ + ++++EG  D
Sbjct: 33  PPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDGNNPAENGDAKTDQAQKAEGAGD 87

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>HMGN2_CHICK (P02314) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERD 247
           P  P P    A   +    P G+ GKA    + +    NG+A+ + ++++EG  D
Sbjct: 33  PPKPEPKPKKAAPKKSEKVPKGKKGKADAGKEGNNPAENGDAKTDQAQKAEGAGD 87

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>HMGN2_CANFA (Q711A6) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 411 PFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERD 247
           P  P P    A   +    P G+ GKA    D +    NG+A+ + ++++EG  D
Sbjct: 33  PPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDGNNPAENGDAKTDQAQKAEGAGD 87

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>FGF5_RAT (P48807) Fibroblast growth factor 5 precursor (FGF-5) (HBGF-5)|
          Length = 266

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = -1

Query: 417 GEPFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERDGAV 238
           G+P PP      +G   RS   +  +  ++P     G  G+G   +       G R G++
Sbjct: 30  GQPAPPRNPGDSSGSRGRSSATFASSSASSPVAASPGSQGSGSEHSSFQWSPSGRRTGSL 89

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>FGF5_MOUSE (P15656) Fibroblast growth factor 5 precursor (FGF-5) (HBGF-5)|
          Length = 264

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = -1

Query: 417 GEPFPPTPLAAMAGDLRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGERDGAV 238
           G+P PP      +G   RS   +  +  ++P     G  G+G   +       G R G++
Sbjct: 30  GQPAPPRNPGDSSGSRGRSSATFSSSSASSPVAASPGSQGSGSEHSSFQWSPSGRRTGSL 89

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>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -1

Query: 429  SGAIGEPFPPTPLAAMAGDLRRSD-GPYGRAGKATP--APDLSGDLGN 295
            SG  G P PP P+    G   R + GP GR G+  P   P  +G+ G+
Sbjct: 878  SGNAGPPGPPGPVGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGS 925

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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -1

Query: 429  SGAIGEPFPPTPLAAMAGDLRRSD-GPYGRAGKATP--APDLSGDLGN 295
            SG  G P PP P+    G   R + GP GR G+  P   P  +G+ G+
Sbjct: 878  SGNAGPPGPPGPVGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGS 925

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>YBX2A_XENLA (P21574) Y-box-binding protein 2-A (Cytoplasmic RNA-binding protein|
           p56) (mRNP4)
          Length = 336

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = -1

Query: 414 EPFPPTPLAAMAGD------LRRSDGPYGRAGKATPAPDLSGDLGNGEARAECSRESEGE 253
           +P  PT  A  +GD       RR    + R  +  PAP  + + G+GEA+AE   +   E
Sbjct: 206 DPVAPTSEALASGDDPQRPPPRRFRQRFRRPFRPRPAPQQTPEGGDGEAKAESGEDPRPE 265

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>WOX11_ARATH (Q6X7J3) WUSCHEL-related homeobox 11|
          Length = 268

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 424 RHRRAVPADAAGGHGRRPQAKRWSVRP 344
           RH R+ P+ A+G     P   RWS +P
Sbjct: 12  RHSRSPPSSASGSTSAEPVRSRWSPKP 38

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>B2L13_MOUSE (P59017) Bcl-2-like 13 protein (Mil1 protein) (Bcl-rambo)|
          Length = 434

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 345 RAGKATPAPDLSGDLGNGEARAECSRESEGER-DGAVVISESSRWARSRA 199
           RA K +P P +  +LG  E  A  +R    ER +GA  +SE    +R ++
Sbjct: 338 RAEKTSPTPSVFVELGEEELEAVTARPEAVERAEGAAQLSEERAGSRKKS 387

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>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)|
          Length = 1670

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -1

Query: 444  GTVESSGAIGEPFPPTPLAAMAGDLRRSDGPYGRAGK----ATPAPDLSGDLGNGEARAE 277
            GT    G  GEP PP P     G+L    GP G+ GK     TP P  +G+ GN  ++ E
Sbjct: 1364 GTPGEPGMQGEPGPPGP----PGNLGPC-GPRGKPGKDGKPGTPGP--AGEKGNKGSKGE 1416

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>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1|
          Length = 2042

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = +1

Query: 172  PCPNFPVQACSTSRP----PRALADDHRAVPLSLALPTTLRTGLSVPQIPAEVRGRGRLP 339
            P  + P+ + ST +P    P +    HR+   +  L     TG  V   P     RGR  
Sbjct: 1353 PAASEPLPSASTDQPITPKPTSRGRAHRSSAKTPELQPPTSTGQPVTPRPTSQATRGRTH 1412

Query: 340  RSAVRT 357
            RS+++T
Sbjct: 1413 RSSIKT 1418

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>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
 Frame = -3

Query: 436  GVLGRHRRAVPADAAGGHGRR-PQAKRWSV----RPSGEGDPGPGPQRGFGERRGPCG 278
            G+ G      P   AG  G R P      +    RP  +G PGP  ++G    +GP G
Sbjct: 1072 GLKGSEGPPGPPGPAGSPGERGPAGSAGPIGIPGRPGPQGPPGPAGEKGLPGEKGPQG 1129

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>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 301

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = -3

Query: 412 AVPADAAGGHGRRPQAKRWSVR----PSGEGDPGPGPQRGFG 299
           A  A AAGG G  P  +R  V      +GEGDPG     G G
Sbjct: 7   AAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGDPGGAGDYGNG 48

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>EL5_ORYSA (Q9LRB7) E3 ubiquitin ligase EL5 (EC 6.3.2.-)|
          Length = 325

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 418 RRAVPADAAGGHGRRPQAKRWSVRPSGEGDPGPG 317
           RRAV   +  G GRRP+ +R   R    GD G G
Sbjct: 66  RRAVTTTSTSGRGRRPRPRR---RSGSGGDGGTG 96

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>UBP8_HUMAN (P40818) Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 8) (Ubiquitin-specific
           processing protease 8) (Deubiquitinating enzyme 8)
           (hUBPy)
          Length = 1118

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +1

Query: 256 SLALPTTLRTGLSVPQIPAEVRGRGRLPRSAVRTIASPEVACHGRQRRRRE 408
           S A P+T  T  + PQIPAE   R R P    R+ +SP++    ++  +R+
Sbjct: 686 SSAPPSTPPTHKAKPQIPAE---RDREPSKLKRSYSSPDITQAIQEEEKRK 733

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>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = -1

Query: 405 PPTPLAAMAGDLRRSDG-PYGRAGKATPAPDLSG--DLGNG-EARAECSRESEGERDGAV 238
           PP+ L  ++  LR  +G P G   +  P     G   L +   ARA   R  E E +  V
Sbjct: 375 PPSLLGYLS--LRAGEGRPNGEGAEPGPGRSFGGFRPLSSALPARARRHRAEEPEEEEEV 432

Query: 237 VISESSRWARSRA 199
           V +E   WAR R+
Sbjct: 433 VEAEEETWARGRS 445

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>STRN3_RAT (P58405) Striatin-3 (Cell-cycle autoantigen SG2NA) (S/G2 antigen)|
           (Fragment)
          Length = 461

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +2

Query: 299 PKSPLRSGAGVAFPARPY-GPSLRLRSPAMAASGVGGNGSPMA 424
           P+     G G+A P RP  GP   L  P  A    GG G P A
Sbjct: 19  PQQGRGGGQGMAVPPRPQQGPGGNLSLPPGANGAPGGGGPPAA 61

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>MYB3_HORVU (P20027) Myb-related protein Hv33|
          Length = 302

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 318 DLSGDLGNGEARAECSRESEGERDGAVVISESSRWARSRAGLDREIRARLH 166
           D+S +LG GE+ +  S  + G   G+V+  E   WA++        R + H
Sbjct: 222 DVSENLGYGESSSNSSNWNYGGEVGSVLDGEVPHWAKAEPAFAEMERQQQH 272

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>OST6_MOUSE (Q5GFD5) Heparan sulfate glucosamine 3-O-sulfotransferase 6 (EC|
           2.8.2.23) (Heparan sulfate D-glucosaminyl
           3-O-sulfotransferase 6) (Heparan sulfate
           3-O-sulfotransferase 6) (3-OST-6)
          Length = 342

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 314 RSGAGVAFPARPYGPSLRLRSPAM-AASGVGGNGSPMA 424
           R+ A V  PA P   SLRLR+P +  ASG G    P A
Sbjct: 56  RAPAPVPAPAEPPHTSLRLRAPGLPVASGPGRRRFPQA 93

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>MRCKG_HUMAN (Q6DT37) Serine/threonine-protein kinase MRCK gamma (EC 2.7.11.1)|
            (CDC42-binding protein kinase gamma) (Myotonic dystrophy
            kinase-related CDC42-binding kinase gamma) (Myotonic
            dystrophy protein kinase-like alpha) (MRCK gamma)
            (DMPK-like gamma
          Length = 1551

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 302  KSPLRSGAGVAFPARPYGPSLRLRSPA-MAASGVGGNGSPM 421
            K  +  G+G   P RP+  S  LR PA M + G+GG+  PM
Sbjct: 1468 KGRVARGSG---PQRPHSFSEALRRPASMGSEGLGGDADPM 1505

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>DIDO1_MOUSE (Q8C9B9) Death-inducer obliterator 1 (DIO-1) (Death-associated|
            transcription factor 1) (DATF-1) (Fragments)
          Length = 1956

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 427  GRHRRAVPADAAGGHGRRPQAKRWSVRPSGEGDPGPGPQRGFGERRGPCG 278
            G  +  +P+  +G HG  P      + PS  G P  G    F +R+ P G
Sbjct: 1514 GAQKPPIPSLFSGQHGPPPYGDNRGLSPSYLGGPRGGAPAQFEDRKDPHG 1563


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,429,785
Number of Sequences: 219361
Number of extensions: 948250
Number of successful extensions: 5107
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 4232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5072
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result