>CSMD2_HUMAN (Q7Z408) CUB and sushi domain-containing protein 2 (CUB and sushi|
            multiple domains protein 2)
          Length = 3487

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
 Frame = +2

Query: 62   TLSIYGCSKFAACN--------------AVAAMSDAEQGPYAIHGAAPKPVVDGEDDGTR 199
            TLS+YG +   +CN              A    S +E    A H   P+P+V+G  +G  
Sbjct: 2672 TLSVYGATAIFSCNSGYTLVGSRVRECMANGLWSGSEVRCLAGHCGTPEPIVNGHINGEN 2731

Query: 200  EVAGFWGYLLQIIYQTNAG 256
                 + Y   ++YQ NAG
Sbjct: 2732 -----YSYRGSVVYQCNAG 2745

>ARI1_MOUSE (Q9Z1K5) Protein ariadne-1 homolog (ARI-1) (Ubiquitin-conjugating|
           enzyme E2-binding protein 1) (UbcH7-binding protein)
           (UbcM4-interacting protein 77)
          Length = 555

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = -1

Query: 181 PVDDRLRGGSVDGVRPLLGVGHRRDGIAGGE 89
           P DD L  G V+ V P LGVG  RDG+  GE
Sbjct: 35  PDDDNLDLGEVELVEPGLGVGGERDGLLCGE 65

>ZBED3_HUMAN (Q96IU2) Zinc finger BED domain-containing protein 3|
          Length = 234

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +3

Query: 27  SFW*RFTSGLRRRFRSTGAASSPPAMPSRRCPTP 128
           + W    S  RR   S+GA SSPPA P   CP P
Sbjct: 88  ALWRHLRSAHRRELESSGAGSSPPAAP---CPPP 118

>ARI1_HUMAN (Q9Y4X5) Protein ariadne-1 homolog (ARI-1) (Ubiquitin-conjugating|
           enzyme E2-binding protein 1) (UbcH7-binding protein)
           (UbcM4-interacting protein) (HHARI) (H7-AP2) (MOP-6)
          Length = 557

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = -1

Query: 181 PVDDRLRGGSVDGVRPLLGVGHRRDGIAGGE 89
           P DD L  G V+ V P LGVG  RDG+  GE
Sbjct: 35  PDDDTLDLGEVELVEPGLGVGGERDGLLCGE 65

>HRPH_PSESY (Q01723) Hypersensitivity response secretion protein hrpH precursor|
          Length = 701

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = -1

Query: 178 VDDRLRGGSVDGVRPLLGVGHRRDGIAGG 92
           +D R  GGS++G+  LLG G R +G+AGG
Sbjct: 209 LDTRSHGGSINGM-DLLGRGGRGNGLAGG 236

>Y7333_BRAJA (Q89DV4) UPF0182 protein bll7333|
          Length = 927

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +2

Query: 206 AGFWGYLLQIIYQTNAGA---VMLTDCVFWFIIFP-FLTVKDYSMNFLLIGMHSVNAVFL 373
           AG WG  LQ +YQ   GA   +   D  F+    P ++ +K++ M  L +      A++L
Sbjct: 143 AGNWGVFLQFVYQAPYGADDPLYNNDIGFYLFSLPAYILIKNWMMLALALSALFAAAIYL 202

Query: 374 L 376
           +
Sbjct: 203 V 203

>QUEA_RHIME (Q92PY5) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 360

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -1

Query: 289 EPEDTVCKHHGSCICLIDDLQQVPPEPGDLPRAVVLPVDDRLRGGSVDGVRPLLGVGH 116
           +P D +   HG   CL+  L+ V  E GD    V L  D  L G S+D    ++ VGH
Sbjct: 107 KPGDRISFGHGGSACLLGSLEAVVEEKGDAGE-VTLRFD--LSGPSLD--EAIMAVGH 159

>YL051_MIMIV (Q5UPD1) Hypothetical protein L51|
          Length = 159

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = -1

Query: 379 AEQENSVDRVHSYQQKVHTVIFDGEEWKNDEPE-----DTVCKHHGSCICLIDDLQQVPP 215
           + Q+N +  V+ Y+ K H + F  +EW  +  +     D  C  H       DD+ +  P
Sbjct: 68  SHQDNIIGNVYQYKGKYHCMCFISQEWVEEINDWYRCCDNECDDH-------DDIPRTIP 120

Query: 214 EPGD 203
            P +
Sbjct: 121 YPNN 124

>Y2229_MYCBO (P64952) Hypothetical protein Mb2229|
          Length = 236

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 157 GSVDGVRPLLGVGHRRDGIAGGELAAPVDRKRRRKPEVNRHQNEGPL 17
           GS DG RP  G     D   G +   P  R   ++ +  RH  +GP+
Sbjct: 22  GSKDGCRPDSGRTSGSDTSRGSQTTGPKGRPTPKRNQSRRHTKKGPV 68

>Y2206_MYCTU (P64951) Hypothetical protein Rv2206/MT2262|
          Length = 236

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 157 GSVDGVRPLLGVGHRRDGIAGGELAAPVDRKRRRKPEVNRHQNEGPL 17
           GS DG RP  G     D   G +   P  R   ++ +  RH  +GP+
Sbjct: 22  GSKDGCRPDSGRTSGSDTSRGSQTTGPKGRPTPKRNQSRRHTKKGPV 68

>Y1317_HAEIN (P44160) Hypothetical UPF0010 protein HI1317|
          Length = 271

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 271 RLCLLVHHFSIPHRQRLQYELFADRNAL 354
           RL  L H++   H+ RL++ELF+D N +
Sbjct: 95  RLWQLSHYYISVHKVRLEFELFSDLNII 122

>TIG_LEGPL (Q5WVI9) Trigger factor (TF)|
          Length = 443

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -1

Query: 175 DDRLRGGSVDGVRPLLGVGHR----RDGIAGGELAAPVDRK 65
           D   +GGS +G   ++G G       DGI GG++  P+D K
Sbjct: 174 DKPFQGGSAEGYELVIGSGSMIPGFEDGIIGGKIDKPLDIK 214

>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding|
            protein) (NRE-binding protein) (DBP-5) (Bax antagonist
            selected in saccharomyces 1) (BASS1)
          Length = 2426

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 16/30 (53%), Positives = 16/30 (53%)
 Frame = +3

Query: 45   TSGLRRRFRSTGAASSPPAMPSRRCPTPSR 134
            T   RRR RS G   S    PSRR  TPSR
Sbjct: 1933 TPSRRRRSRSVGRRRSFSISPSRRSRTPSR 1962

>TBB_UNCNE (Q86ZP5) Tubulin beta chain (Beta tubulin)|
          Length = 447

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 382 FAEQENSV-DRVHSYQQKVHTVIFDGEEWKNDEPE 281
           F E E+++ D VH YQQ     I +GEE   +EP+
Sbjct: 408 FTEAESNMNDLVHEYQQYQDASISEGEEDYEEEPQ 442

>NOV_XENLA (P51609) Protein NOV homolog precursor (Xnov)|
          Length = 343

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
 Frame = -1

Query: 328 HTVIFDGEEWKNDEPEDTVCKHHGSCI---------CLIDDLQQVPPEPGDLPRAVVLP 179
           ++ +FDG  ++N E     CK+H +C+         C +D L   P  P   PR V +P
Sbjct: 93  NSCVFDGVVYRNRESFQPSCKYHCTCLNGHIGCVPRCNLDLLLPGPDCP--FPRRVKVP 149

>TIG_LEGPH (Q5ZUD8) Trigger factor (TF)|
          Length = 443

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -1

Query: 175 DDRLRGGSVDGVRPLLGVGHR----RDGIAGGELAAPVDRK 65
           D   +GGS +G   ++G G       DGI GG++  P D K
Sbjct: 174 DKPFQGGSAEGYELVIGSGSMIPGFEDGIVGGKIDKPFDIK 214

>TIG_LEGPA (Q5X450) Trigger factor (TF)|
          Length = 443

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -1

Query: 175 DDRLRGGSVDGVRPLLGVGHR----RDGIAGGELAAPVDRK 65
           D   +GGS +G   ++G G       DGI GG++  P D K
Sbjct: 174 DKPFQGGSAEGYELVIGSGSMIPGFEDGIVGGKIDKPFDIK 214

>LAX1_MEDTR (Q9FEL8) Auxin transporter-like protein 1 (AUX1-like protein 1)|
           (MtLAX1)
          Length = 479

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
 Frame = +2

Query: 203 VAGFWGYLLQIIYQTNAGAVMLTDC----------VFWFIIFPFLTVKDYSMNFLLIGMH 352
           +A +W +  Q++  +NA +++  +           +  FI F F     Y +   +IGMH
Sbjct: 284 IAVYWAFGDQLLDHSNAFSLLPRNAWRDAGVILMLIHQFITFGFACTPLYFVWEKVIGMH 343

Query: 353 SVNAVFLLGEASLNSLRFPWFRIAYF 430
              ++FL   A L  +   WF    F
Sbjct: 344 DTKSIFLRALARLPVVIPIWFLAIIF 369


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,951,917
Number of Sequences: 219361
Number of extensions: 1131188
Number of successful extensions: 3987
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3986
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)