ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast01d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRIM1_HUMAN (Q9NZV1) Cysteine-rich motor neuron 1 protein precur... 29 4.5
2UL14_HCMVA (P16756) Hypothetical protein UL14 precursor 28 7.7

>CRIM1_HUMAN (Q9NZV1) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)|
           (Cysteine-rich repeat-containing protein S52)
          Length = 1036

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 384 DLFKYCNIANMK-KCNVLNGCFVSVKFSSSNLCFSRISEI 268
           +L   CNI N K +CN +  C    +F S ++C S +  I
Sbjct: 128 NLIAGCNIINGKCECNTIRTCSNPFEFPSQDMCLSALKRI 167



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>UL14_HCMVA (P16756) Hypothetical protein UL14 precursor|
          Length = 327

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 57  GGRWRLEEGGAGRR 16
           GGRWR E+GGA +R
Sbjct: 110 GGRWRFEDGGAAQR 123


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,096,717
Number of Sequences: 219361
Number of extensions: 697218
Number of successful extensions: 2652
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2648
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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