ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bast01d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK064933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 6e-68
2ref|XM_463456.1| Oryza sativa (japonica cultivar-group), predic... 242 8e-61
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 240 3e-60
4dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic D... 240 3e-60
5gb|AF172282.1| Oryza sativa adh1-adh2 region 64 4e-07
6gb|AC123522.2| Oryza sativa (japonica cultivar-group) chromosome... 64 4e-07
7gb|AC123521.2| Oryza sativa (japonica cultivar-group) chromosome... 64 4e-07
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
9dbj|AK071323.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
10gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 64 4e-07
11emb|AL161786.12| Human DNA sequence from clone RP11-344L17 on ch... 44 0.38
12gb|AC103368.7| Mus musculus chromosome 18, clone RP24-131L2, com... 42 1.5
13gb|AC145323.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
14gb|AC183274.3| Pan troglodytes BAC clone CH251-156F5 from chromo... 42 1.5
15gb|AC006015.5| Homo sapiens PAC clone RP5-965K10 from 7, complet... 42 1.5
16emb|AL603832.28| Human DNA sequence from clone RP11-426L16 on ch... 42 1.5
17gb|AC092941.5| Homo sapiens 3 BAC RP11-132N15 (Roswell Park Canc... 42 1.5
18gb|BC047486.1| Homo sapiens F-box and leucine-rich repeat protei... 42 1.5
19gb|DQ397864.1| Cenarchaeum symbiosum clone C21B03, complete sequ... 42 1.5
20gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.5
21emb|CT009565.10| M.truncatula DNA sequence from clone MTH2-173F9... 42 1.5
22dbj|AP000729.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.5
23ref|XM_526215.1| PREDICTED: Pan troglodytes pyruvate dehydrogena... 40 6.0
24ref|XM_600317.2| PREDICTED: Bos taurus similar to KARP-1 binding... 40 6.0
25gb|AE006162.1| Pasteurella multocida subsp. multocida str. Pm70 ... 40 6.0
26gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.0
27gb|AC115863.17| Mus musculus chromosome 9, clone RP24-295J1, com... 40 6.0
28gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.0
29gb|AC163350.4| Mus musculus BAC clone RP23-186B12 from chromosom... 40 6.0
30emb|Z82214.23|HS526I14 Human DNA sequence from clone RP3-526I14 ... 40 6.0
31emb|AL137797.9| Human DNA sequence from clone RP5-1109J22 on chr... 40 6.0
32emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.0
33emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, ... 40 6.0
34emb|AL035525.1|ATF4I10 Arabidopsis thaliana DNA chromosome 4, BA... 40 6.0
35gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 6.0
36gb|DQ020097.1| Zea mays cultivar B73 inbred aberrant pollen tran... 40 6.0
37gb|AC026330.12| Homo sapiens 3 BAC RP11-414D23 (Roswell Park Can... 40 6.0
38gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.0
39gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 6.0
40dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
41dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.0
42gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.0
43emb|AL133523.5|CNS01DVB Human chromosome 14 DNA sequence BAC R-7... 40 6.0 
>dbj|AK064933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000O19, full
           insert sequence
          Length = 2137

 Score =  266 bits (134), Expect = 6e-68
 Identities = 182/198 (91%)
 Strand = Plus / Plus

                                                                       
Query: 242 ggctcttcgagggccggggacggcgtaatctccgaaatccgtgagaaacataaattggaa 301
           ||||| |||| |||||||| |||||| || |||||||||||||||||||| |||||||||
Sbjct: 372 ggctcgtcgaaggccgggggcggcgtcatatccgaaatccgtgagaaacacaaattggaa 431

                                                                       
Query: 302 ctggagaatttgacactaacaaagcacccattcaagacattgcactttttcatgttagct 361
           |||||||||||||||||||||||||| ||||||| |||||| |  |||||||||||||||
Sbjct: 432 ctggagaatttgacactaacaaagcatccattcaggacattacgttttttcatgttagct 491

                                                                       
Query: 362 atgttgcaatacttgaaaagatcagcagcatatatcctgagtaaaggtgctttgtttgtt 421
           |||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||
Sbjct: 492 atgttgcaatacttgaaaagattagcaacatatatcctgagtaagggtgctttgtttgtt 551

                             
Query: 422 gtcctaattgttttggtg 439
           ||||| ||||| ||||||
Sbjct: 552 gtcctcattgtgttggtg 569
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>ref|XM_463456.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1221

 Score =  242 bits (122), Expect = 8e-61
 Identities = 155/166 (93%)
 Strand = Plus / Plus

                                                                       
Query: 274 cgaaatccgtgagaaacataaattggaactggagaatttgacactaacaaagcacccatt 333
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 126 cgaaatccgtgagaaacacaaattggaactggagaatttgacactaacaaagcatccatt 185

                                                                       
Query: 334 caagacattgcactttttcatgttagctatgttgcaatacttgaaaagatcagcagcata 393
           || |||||| |  ||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 186 caggacattacgttttttcatgttagctatgttgcaatacttgaaaagattagcaacata 245

                                                         
Query: 394 tatcctgagtaaaggtgctttgtttgttgtcctaattgttttggtg 439
           |||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 246 tatcctgagtaagggtgctttgtttgttgtcctcattgtgttggtg 291
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  240 bits (121), Expect = 3e-60
 Identities = 154/165 (93%)
 Strand = Plus / Plus

                                                                            
Query: 275      gaaatccgtgagaaacataaattggaactggagaatttgacactaacaaagcacccattc 334
                ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 32952060 gaaatccgtgagaaacacaaattggaactggagaatttgacactaacaaagcatccattc 32952119

                                                                            
Query: 335      aagacattgcactttttcatgttagctatgttgcaatacttgaaaagatcagcagcatat 394
                | |||||| |  ||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 32952120 aggacattacgttttttcatgttagctatgttgcaatacttgaaaagattagcaacatat 32952179

                                                             
Query: 395      atcctgagtaaaggtgctttgtttgttgtcctaattgttttggtg 439
                ||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 32952180 atcctgagtaagggtgctttgtttgttgtcctcattgtgttggtg 32952224
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>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0010B10
          Length = 155263

 Score =  240 bits (121), Expect = 3e-60
 Identities = 154/165 (93%)
 Strand = Plus / Plus

                                                                         
Query: 275   gaaatccgtgagaaacataaattggaactggagaatttgacactaacaaagcacccattc 334
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 18288 gaaatccgtgagaaacacaaattggaactggagaatttgacactaacaaagcatccattc 18347

                                                                         
Query: 335   aagacattgcactttttcatgttagctatgttgcaatacttgaaaagatcagcagcatat 394
             | |||||| |  ||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 18348 aggacattacgttttttcatgttagctatgttgcaatacttgaaaagattagcaacatat 18407

                                                          
Query: 395   atcctgagtaaaggtgctttgtttgttgtcctaattgttttggtg 439
             ||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 18408 atcctgagtaagggtgctttgtttgttgtcctcattgtgttggtg 18452
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>gb|AF172282.1| Oryza sativa adh1-adh2 region
          Length = 339485

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 275   gaaatccgtgagaaacataaattggaactggagaatttgacactaacaaagc 326
             |||||| | |||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 72903 gaaatctgggagaaacacaaattggaactgcagaatttgacgctaacaaagc 72954
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>gb|AC123522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0051B13,
              complete sequence
          Length = 178000

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                  
Query: 275    gaaatccgtgagaaacataaattggaactggagaatttgacactaacaaagc 326
              |||||| | |||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 148180 gaaatctgggagaaacacaaattggaactgcagaatttgacgctaacaaagc 148129
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>gb|AC123521.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0037P04, complete sequence
          Length = 139693

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                 
Query: 275   gaaatccgtgagaaacataaattggaactggagaatttgacactaacaaagc 326
             |||||| | |||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 75622 gaaatctgggagaaacacaaattggaactgcagaatttgacgctaacaaagc 75571
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                   
Query: 275     gaaatccgtgagaaacataaattggaactggagaatttgacactaacaaagc 326
               |||||| | |||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 5603062 gaaatctgggagaaacacaaattggaactgcagaatttgacgctaacaaagc 5603011



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 23      cccgccccgccctcctccaac 43
               |||||||||||||||||||||
Sbjct: 5122297 cccgccccgccctcctccaac 5122317
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>dbj|AK071323.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089I04, full
           insert sequence
          Length = 1726

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 275 gaaatccgtgagaaacataaattggaactggagaatttgacactaacaaagc 326
           |||||| | |||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 946 gaaatctgggagaaacacaaattggaactgcagaatttgacgctaacaaagc 997
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                   
Query: 275     gaaatccgtgagaaacataaattggaactggagaatttgacactaacaaagc 326
               |||||| | |||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 5669539 gaaatctgggagaaacacaaattggaactgcagaatttgacgctaacaaagc 5669488



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 23      cccgccccgccctcctccaac 43
               |||||||||||||||||||||
Sbjct: 5188774 cccgccccgccctcctccaac 5188794
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>emb|AL161786.12| Human DNA sequence from clone RP11-344L17 on chromosome 9 Contains
            the 5' end of a novel gene (MGC20553), complete sequence
          Length = 145676

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 19   gcgccccgccccgccctcctcc 40
            ||||||||||||||||||||||
Sbjct: 3279 gcgccccgccccgccctcctcc 3300
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>gb|AC103368.7| Mus musculus chromosome 18, clone RP24-131L2, complete sequence
          Length = 160855

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 373    cttgaaaagatcagcagcatatatc 397
              ||||||||||||| |||||||||||
Sbjct: 127851 cttgaaaagatcaacagcatatatc 127827
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>gb|AC145323.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0018N12, complete sequence
          Length = 137127

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    cccgccccgccctcctccaac 43
             |||||||||||||||||||||
Sbjct: 35416 cccgccccgccctcctccaac 35396
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>gb|AC183274.3| Pan troglodytes BAC clone CH251-156F5 from chromosome 7, complete
             sequence
          Length = 163934

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 20    cgccccgccccgccctcctcc 40
             |||||||||||||||||||||
Sbjct: 14424 cgccccgccccgccctcctcc 14444
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>gb|AC006015.5| Homo sapiens PAC clone RP5-965K10 from 7, complete sequence
          Length = 112417

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    cgccccgccccgccctcctcc 40
             |||||||||||||||||||||
Sbjct: 65342 cgccccgccccgccctcctcc 65322
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>emb|AL603832.28| Human DNA sequence from clone RP11-426L16 on chromosome 1 Contains the
             3' end of the CAPZA1 gene for capping protein (actin
             filament) muscle Z-line, alpha 1, the MOV10 gene for
             Mov10, Moloney leukemia virus 10, homolog (mouse), a novel
             gene, the ARHC gene for ras homolog gene family, member C,
             the gene for a novel protein,  the gene for a novel
             protein (TAFA3), a nuclear transport factor 2 (NUTF2)
             pseudogene,  the 3' end of a novel gene and two CpG
             islands, complete sequence
          Length = 193604

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    gccccgccccgccctcctcca 41
             |||||||||||||||||||||
Sbjct: 59695 gccccgccccgccctcctcca 59715
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>gb|AC092941.5| Homo sapiens 3 BAC RP11-132N15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 122153

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 421   tgtcctaattgttttggtggt 441
             |||||||||||||||||||||
Sbjct: 65883 tgtcctaattgttttggtggt 65863
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>gb|BC047486.1| Homo sapiens F-box and leucine-rich repeat protein 11, mRNA (cDNA
           clone MGC:51265 IMAGE:5296445), complete cds
          Length = 6533

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 226 gccggggccggcccggggctc 246
           |||||||||||||||||||||
Sbjct: 475 gccggggccggcccggggctc 495
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>gb|DQ397864.1| Cenarchaeum symbiosum clone C21B03, complete sequence
          Length = 40572

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   gcgccggggccggcccggggc 244
             |||||||||||||||||||||
Sbjct: 37867 gcgccggggccggcccggggc 37847
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 222     cggcgccggggccggcccggg 242
               |||||||||||||||||||||
Sbjct: 3890106 cggcgccggggccggcccggg 3890126
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>emb|CT009565.10| M.truncatula DNA sequence from clone MTH2-173F9 on chromosome 3, complete
              sequence
          Length = 151325

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 419    gttgtcctaattgttttggtggtaa 443
              ||||||||||||||| |||||||||
Sbjct: 147352 gttgtcctaattgttatggtggtaa 147376
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>dbj|AP000729.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-699D4, complete
              sequence
          Length = 160535

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 226    gccggggccggcccggggctc 246
              |||||||||||||||||||||
Sbjct: 127323 gccggggccggcccggggctc 127343
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>ref|XM_526215.1| PREDICTED: Pan troglodytes pyruvate dehydrogenase (lipoamide) beta
           (LOC470832), mRNA
          Length = 1506

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 207 ggcgccggaaggccacggcgccgg 230
           |||||||||||||||| |||||||
Sbjct: 443 ggcgccggaaggccacagcgccgg 420
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>ref|XM_600317.2| PREDICTED: Bos taurus similar to KARP-1 binding protein 1
            (LOC522044), mRNA
          Length = 7216

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  cgccggggccggcccggggc 244
            ||||||||||||||||||||
Sbjct: 2548 cgccggggccggcccggggc 2529
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>gb|AE006162.1| Pasteurella multocida subsp. multocida str. Pm70 section 129 of 204 of
             the complete genome
          Length = 12948

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 336   agacattgcactttttcatg 355
             ||||||||||||||||||||
Sbjct: 12720 agacattgcactttttcatg 12701
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 51      tccctccgcgatctcgccgcgcga 74
               |||| |||||||||||||||||||
Sbjct: 1144637 tcccgccgcgatctcgccgcgcga 1144660
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>gb|AC115863.17| Mus musculus chromosome 9, clone RP24-295J1, complete sequence
          Length = 174095

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     cgccccgccccgccctcctc 39
              ||||||||||||||||||||
Sbjct: 156110 cgccccgccccgccctcctc 156129
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 308      aatttgacactaacaaagcacccattca 335
                |||||||| ||||||||||| |||||||
Sbjct: 11800415 aatttgacgctaacaaagcatccattca 11800388
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>gb|AC163350.4| Mus musculus BAC clone RP23-186B12 from chromosome 9, complete sequence
          Length = 203468

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     cgccccgccccgccctcctc 39
              ||||||||||||||||||||
Sbjct: 155154 cgccccgccccgccctcctc 155135
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>emb|Z82214.23|HS526I14 Human DNA sequence from clone RP3-526I14 on chromosome 22, complete
             sequence
          Length = 129389

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    gccccgccccgccctcctcc 40
             ||||||||||||||||||||
Sbjct: 41607 gccccgccccgccctcctcc 41626
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>emb|AL137797.9| Human DNA sequence from clone RP5-1109J22 on chromosome 1 Contains
             three novel genes, the OTX3 gene for orthodenticle homolog
             3 (Drosophila) and a CpG island, complete sequence
          Length = 105345

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    cgccccgccccgccctcctc 39
             ||||||||||||||||||||
Sbjct: 62684 cgccccgccccgccctcctc 62665
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 51      tccctccgcgatctcgccgcgcga 74
               |||| |||||||||||||||||||
Sbjct: 2460541 tcccgccgcgatctcgccgcgcga 2460564
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>emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 79
          Length = 199536

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   tacttgaaaagatcagcagc 390
             ||||||||||||||||||||
Sbjct: 40052 tacttgaaaagatcagcagc 40071
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>emb|AL035525.1|ATF4I10 Arabidopsis thaliana DNA chromosome 4, BAC clone F4I10 (ESSA project)
          Length = 111876

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   tacttgaaaagatcagcagc 390
             ||||||||||||||||||||
Sbjct: 86260 tacttgaaaagatcagcagc 86279
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 83      cgcccagccgcccaccgagc 102
               ||||||||||||||||||||
Sbjct: 3952411 cgcccagccgcccaccgagc 3952430
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>gb|DQ020097.1| Zea mays cultivar B73 inbred aberrant pollen transmission 1 (apt1)
             gene, complete cds
          Length = 26897

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   aaaagatcagcagcatatat 396
             ||||||||||||||||||||
Sbjct: 19737 aaaagatcagcagcatatat 19756
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>gb|AC026330.12| Homo sapiens 3 BAC RP11-414D23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 188205

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   ttgacactaacaaagcaccc 330
             ||||||||||||||||||||
Sbjct: 46167 ttgacactaacaaagcaccc 46148
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    agggttttcgcgccgcggcg 196
              ||||||||||||||||||||
Sbjct: 485102 agggttttcgcgccgcggcg 485083
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 51     tccctccgcgatctcgccgcgcga 74
              |||| |||||||||||||||||||
Sbjct: 273970 tcccgccgcgatctcgccgcgcga 273947
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 308      aatttgacactaacaaagcacccattca 335
                |||||||| ||||||||||| |||||||
Sbjct: 11797178 aatttgacgctaacaaagcatccattca 11797151
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 227     ccggggccggcccggggctcttcg 250
               |||||||||| |||||||||||||
Sbjct: 5047036 ccggggccgggccggggctcttcg 5047013
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>gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0035J18, from chromsome 3, complete sequence
          Length = 162711

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 308    aatttgacactaacaaagcacccattca 335
              |||||||| ||||||||||| |||||||
Sbjct: 110238 aatttgacgctaacaaagcatccattca 110265
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>emb|AL133523.5|CNS01DVB Human chromosome 14 DNA sequence BAC R-775G15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173039

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     gccccgccccgccctcctcc 40
              ||||||||||||||||||||
Sbjct: 152137 gccccgccccgccctcctcc 152156


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,437,538
Number of Sequences: 3902068
Number of extensions: 3437538
Number of successful extensions: 76229
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75045
Number of HSP's gapped (non-prelim): 1184
length of query: 443
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 421
effective length of database: 17,147,199,772
effective search space: 7218971104012
effective search space used: 7218971104012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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