>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +1

Query: 70  PAGRKRPAPAPFAGFSTFARSLLFSPVSGFSRLPLTYAPAAKPHQETVGMPPPPSKRA 243
           P  R+ P+P P        R    SP      +   Y+P+  P + T   PPPP +RA
Sbjct: 595 PPRRRTPSPPP--------RRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRA 644

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +1

Query: 70  PAGRKRPAPAPFAGFSTFARSLLFSPVSGFSRLPLTYAPAAKPHQETVGMPPPPSKRA 243
           P  R+ P+P P        R    SP      +   Y+P+  P + T   PPPP +RA
Sbjct: 590 PPRRRTPSPPP--------RRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRA 639

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +1

Query: 70  PAGRKRPAPAPFAGFSTFARSLLFSPVSGFSRLPLTYAPAAKPHQETVGMPPPPSKRA 243
           P  R+ P+P P        R    SP      +   Y+P+  P + T   PPPP +RA
Sbjct: 576 PPRRRTPSPPP--------RRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRA 625

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 79  RKRPAPAPFAGFSTFARSLLFSPVSGFSRLPLTYAPAAKPHQETVGMPPPPSKRA 243
           R+ P+P P        R    SP      +   Y+P+  P + T   PPPP +RA
Sbjct: 572 RRSPSPPP--------RRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRA 618

>HXD3_CHICK (O93353) Homeobox protein Hox-D3|
          Length = 413

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
 Frame = +1

Query: 82  KRPAPAPFAGFSTFARSLLFSPVSGFSRLPLTYAPAAKPHQETVGMP----------PPP 231
           + P P    G+     SL    V+     P +  P  KPHQ T G+P          PPP
Sbjct: 248 RSPVPPAAGGYLNSMHSL----VNSVPYEPQSPPPFNKPHQNTYGIPASYTAPLNNCPPP 303

Query: 232 SKR 240
            KR
Sbjct: 304 QKR 306

>HXA3_CHICK (Q7T3J5) Homeobox protein Hox-A3|
          Length = 413

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
 Frame = +1

Query: 82  KRPAPAPFAGFSTFARSLLFSPVSGFSRLPLTYAPAAKPHQETVGMP----------PPP 231
           + P P    G+     SL    V+     P +  P  KPHQ T G+P          PPP
Sbjct: 248 RSPVPPAAGGYLNSMHSL----VNSVPYEPQSPPPFNKPHQNTYGIPASYTAPLNNCPPP 303

Query: 232 SKR 240
            KR
Sbjct: 304 QKR 306

>MERTK_MOUSE (Q60805) Proto-oncogene tyrosine-protein kinase MER precursor (EC|
           2.7.10.1) (C-mer) (Receptor tyrosine kinase MerTK)
          Length = 994

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 136 LFS-PVSGFSRLPLTYAPAAKPHQETVGMPPPPSKRAKQA 252
           LFS P+ G  RLP+ + P + PH     +PPP + R+  A
Sbjct: 33  LFSGPLPG--RLPVNHRPFSAPHSSRDQLPPPQTGRSHPA 70

>MINK1_MOUSE (Q9JM52) Misshapen-like kinase 1 (EC 2.7.11.1) (Mitogen-activated|
           protein kinase kinase kinase kinase 6) (MAPK/ERK kinase
           kinase kinase 6) (MEK kinase kinase 6) (MEKKK 6)
           (Misshapen/NIK-related kinase) (GCK family kinase MiNK)
          Length = 1308

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 127 RSLLFSPVSGFSRLPLTYAPAAKPHQETVGMPPP 228
           RSLL +  +G++ LP    P+  P + + G  PP
Sbjct: 872 RSLLLADSNGYTNLPDVVQPSHSPTENSKGQSPP 905

>DSCL1_HUMAN (Q8TD84) Down syndrome cell adhesion molecule-like protein 1|
            precursor (Down syndrome cell adhesion molecule 2)
          Length = 2053

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +1

Query: 112  FSTFARSLLFSPVSGFSRLPLTYAPAAKPH----QETVGMPPPPSKRAKQA 252
            + T AR L   P S    LP   APAA       Q T+ MP PP+  A  A
Sbjct: 1937 YHTQARHLTLDPASKSLGLPHPGAPAAASTATLPQRTLAMPAPPAGTAPPA 1987


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.131    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,328,330
Number of Sequences: 219361
Number of extensions: 357822
Number of successful extensions: 1687
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1680
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)