ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bast01b07 |
|---|---|
| Clone Library Name | barley_pub |
>SYV_THETH (P96142) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 30.0 bits (66), Expect = 2.4 Identities = 17/39 (43%), Positives = 20/39 (51%) Frame = -3 Query: 426 GRGEGGLCDGALRGVERVAIGRDLLEARRERGHLAAPLD 310 GR EG ALRG++R R +E RE GHL D Sbjct: 298 GRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEED 336
>SYV_THET8 (Q5SJ45) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 30.0 bits (66), Expect = 2.4 Identities = 17/39 (43%), Positives = 20/39 (51%) Frame = -3 Query: 426 GRGEGGLCDGALRGVERVAIGRDLLEARRERGHLAAPLD 310 GR EG ALRG++R R +E RE GHL D Sbjct: 298 GRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEED 336
>SYV_THET2 (Q72JG7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 862 Score = 30.0 bits (66), Expect = 2.4 Identities = 17/39 (43%), Positives = 20/39 (51%) Frame = -3 Query: 426 GRGEGGLCDGALRGVERVAIGRDLLEARRERGHLAAPLD 310 GR EG ALRG++R R +E RE GHL D Sbjct: 298 GRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEED 336
>CU20_MANSE (Q8T635) Pupal cuticle protein 20 precursor (MsCP20) (MS-PCP20)| Length = 200 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/23 (60%), Positives = 14/23 (60%) Frame = +3 Query: 207 GAGAGDGGEARLIAGAGPEGAAA 275 G GAG GG A L GAG GA A Sbjct: 35 GGGAGSGGNAGLGGGAGGSGAGA 57
>CTG1B_HUMAN (P78358) Cancer/testis antigen 1B (L antigen family member 2)| (LAGE-2 protein) (Autoimmunogenic cancer/testis antigen NY-ESO-1) Length = 180 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/27 (51%), Positives = 14/27 (51%) Frame = +3 Query: 204 PGAGAGDGGEARLIAGAGPEGAAAQDA 284 PG AG GEA G GP GA A A Sbjct: 27 PGGNAGGPGEAGATGGRGPRGAGAARA 53
>CTAG2_HUMAN (O75638) Cancer/testis antigen 2 (L antigen family member 1)| (LAGE-1 protein) (ESO-2 protein) Length = 210 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/27 (51%), Positives = 14/27 (51%) Frame = +3 Query: 204 PGAGAGDGGEARLIAGAGPEGAAAQDA 284 PG AG GEA G GP GA A A Sbjct: 27 PGGNAGGPGEAGATGGRGPRGAGAARA 53
>SYA_BRUSU (P67009) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 885 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +3 Query: 213 GAGDGGEARLIAGAGPEGAAAQDA 284 GAG GG + GP+GA A DA Sbjct: 853 GAGGGGRPDMAQAGGPDGAKAADA 876
>SYA_BRUME (P67008) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 885 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +3 Query: 213 GAGDGGEARLIAGAGPEGAAAQDA 284 GAG GG + GP+GA A DA Sbjct: 853 GAGGGGRPDMAQAGGPDGAKAADA 876
>SYA_BRUAB (Q57CU0) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 885 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +3 Query: 213 GAGDGGEARLIAGAGPEGAAAQDA 284 GAG GG + GP+GA A DA Sbjct: 853 GAGGGGRPDMAQAGGPDGAKAADA 876 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.307 0.123 0.321 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,487,584 Number of Sequences: 219361 Number of extensions: 266108 Number of successful extensions: 2513 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1661 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2412 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits)
