ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart60h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY106217.1| Zea mays PCO093522 mRNA sequence 295 6e-77
2dbj|AK103977.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
3dbj|AK068862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
5dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
6dbj|AP003713.3| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
7gb|BT018941.1| Zea mays clone Contig87.F mRNA sequence 70 7e-09
8gb|DQ324854.1| Azospirillum brasilense putative anti-sigma E gen... 44 0.39
9gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 1.5
10emb|BX055800.1|CNS09F7W Single read from an extremity of a full-... 42 1.5
11dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
12gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
13emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.5
14emb|AL732642.4|CNS08C9H Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.5
15dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.5
16ref|NM_111903.1| Arabidopsis thaliana ATNAP7 AT3G10670 (ATNAP7) ... 40 6.1
17gb|DQ022656.1| Azospirillum brasilense OxyR (oxyR), AhpC (ahpC),... 40 6.1
18gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete ge... 40 6.1
19ref|XM_382977.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 6.1
20gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC... 40 6.1
21gb|AY035125.1| Arabidopsis thaliana putative ABC transporter ATP... 40 6.1
22gb|AC175207.2| Sporobolomyces roseus clone JGIBAIF-9L20, complet... 40 6.1
23gb|AE005984.1| Caulobacter crescentus CB15 section 310 of 359 of... 40 6.1
24emb|BX822291.1|CNS0A774 Arabidopsis thaliana Full-length cDNA Co... 40 6.1
25emb|BX824893.1|CNS0A6YG Arabidopsis thaliana Full-length cDNA Co... 40 6.1
26emb|BX824371.1|CNS0A6WF Arabidopsis thaliana Full-length cDNA Co... 40 6.1
27emb|BX823288.1|CNS0A6IN Arabidopsis thaliana Full-length cDNA Co... 40 6.1
28gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13... 40 6.1
29gb|AY085010.1| Arabidopsis thaliana clone 124334 mRNA, complete ... 40 6.1
30dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.1
31dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 6.1

>gb|AY106217.1| Zea mays PCO093522 mRNA sequence
          Length = 679

 Score =  295 bits (149), Expect = 6e-77
 Identities = 294/343 (85%), Gaps = 6/343 (1%)
 Strand = Plus / Plus

                                                                       
Query: 117 gatgaccatcatcatcgaccagactcagttcgatgcggcggcggagaggaaggtcgcc-- 174
           |||||| |||| ||| || ||| | ||| ||||||||| |||||||||||| ||| ||  
Sbjct: 115 gatgacgatcaccattgaacagccccagctcgatgcggtggcggagaggaaagtccccgg 174

                                                                       
Query: 175 ----ggggacccgggggagctcgtgctcgacggcggcttcaccgtgccggattccaacgc 230
               || ||||| | |||||| |||||||||| |||||||  |||||||||  |||||||
Sbjct: 175 cggaggtgaccccgcggagctggtgctcgacgccggcttcgtcgtgccggacgccaacgc 234

                                                                       
Query: 231 cttcggccacaccttcagggactacgacgcggagtcggagcggaagaagacggtggagga 290
           ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 235 cttcggcaataccttcagggactacgacgcggagtcggagcggaagcagacggtagagga 294

                                                                       
Query: 291 gttctaccgcgtgaaccacatcagccagacgtacgagttcgtgcggcggatgcgggacgc 350
           ||||||||| ||||||||| | || |||||| |||||||||||  |||||||||||  | 
Sbjct: 295 gttctaccgggtgaaccacgtgaggcagacgcacgagttcgtggcgcggatgcgggcgga 354

                                                                       
Query: 351 gtacgcgcggctggacaggacggagatgagcatctgggagtgcatcgagctgnctcacga 410
           ||||| ||||||||||| |||||||||| |||||||||||||||||||||||    ||||
Sbjct: 355 gtacgggcggctggacaagacggagatgggcatctgggagtgcatcgagctgctgaacga 414

                                                      
Query: 411 gttcatcgacgacagcgaccccgacctcgacatgccgcagatc 453
           ||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 415 gttcatcgacgacagcgacccggacctggacatgccccagatc 457



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>dbj|AK103977.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G02, full
           insert sequence
          Length = 1288

 Score =  264 bits (133), Expect = 2e-67
 Identities = 234/268 (87%)
 Strand = Plus / Plus

                                                                       
Query: 186 ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 245
           |||||||||||||||||||||||||  ||||||||| ||||||||||||||| || ||||
Sbjct: 266 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 325

                                                                       
Query: 246 cagggactacgacgcggagtcggagcggaagaagacggtggaggagttctaccgcgtgaa 305
           |||| | || || || ||||| ||| ||||| |||||||||||||||||||||| || ||
Sbjct: 326 caggaattatgaggccgagtctgagaggaaggagacggtggaggagttctaccgggtcaa 385

                                                                       
Query: 306 ccacatcagccagacgtacgagttcgtgcggcggatgcgggacgcgtacgcgcggctgga 365
           |||||||| |||||| || || |||||| ||||||||||||| | |||||   || ||||
Sbjct: 386 ccacatcaaccagacatatgatttcgtgaggcggatgcgggaggagtacggtagggtgga 445

                                                                       
Query: 366 caggacggagatgagcatctgggagtgcatcgagctgnctcacgagttcatcgacgacag 425
           || |||||||||| | |||||||||||||||||||||    |||||||||||||||||||
Sbjct: 446 caagacggagatggggatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 505

                                       
Query: 426 cgaccccgacctcgacatgccgcagatc 453
           |||||| |||||||||||||||||||||
Sbjct: 506 cgacccggacctcgacatgccgcagatc 533



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>dbj|AK068862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169F14, full
           insert sequence
          Length = 1289

 Score =  264 bits (133), Expect = 2e-67
 Identities = 234/268 (87%)
 Strand = Plus / Plus

                                                                       
Query: 186 ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 245
           |||||||||||||||||||||||||  ||||||||| ||||||||||||||| || ||||
Sbjct: 267 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 326

                                                                       
Query: 246 cagggactacgacgcggagtcggagcggaagaagacggtggaggagttctaccgcgtgaa 305
           |||| | || || || ||||| ||| ||||| |||||||||||||||||||||| || ||
Sbjct: 327 caggaattatgaggccgagtctgagaggaaggagacggtggaggagttctaccgggtcaa 386

                                                                       
Query: 306 ccacatcagccagacgtacgagttcgtgcggcggatgcgggacgcgtacgcgcggctgga 365
           |||||||| |||||| || || |||||| ||||||||||||| | |||||   || ||||
Sbjct: 387 ccacatcaaccagacatatgatttcgtgaggcggatgcgggaggagtacggtagggtgga 446

                                                                       
Query: 366 caggacggagatgagcatctgggagtgcatcgagctgnctcacgagttcatcgacgacag 425
           || |||||||||| | |||||||||||||||||||||    |||||||||||||||||||
Sbjct: 447 caagacggagatggggatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 506

                                       
Query: 426 cgaccccgacctcgacatgccgcagatc 453
           |||||| |||||||||||||||||||||
Sbjct: 507 cgacccggacctcgacatgccgcagatc 534



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  127 bits (64), Expect = 3e-26
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                            
Query: 335      ggcggatgcgggacgcgtacgcgcggctggacaggacggagatgagcatctgggagtgca 394
                ||||||||||||| | |||||   || |||||| |||||||||| | |||||||||||||
Sbjct: 21132448 ggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgca 21132507

                                                                           
Query: 395      tcgagctgnctcacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatc 453
                ||||||||    ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 21132508 tcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatc 21132566



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                            
Query: 186      ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 245
                |||||||||||||||||||||||||  ||||||||| ||||||||||||||| || ||||
Sbjct: 21131065 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 21131124

                    
Query: 246      cagg 249
                ||||
Sbjct: 21131125 cagg 21131128



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                           
Query: 262      gagtcggagcggaagaagacggtggaggagttctaccgcgtgaaccacatcagccagac 320
                ||||| ||| ||||| |||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 21132241 gagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagac 21132299



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>dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0456F09
          Length = 141336

 Score =  127 bits (64), Expect = 3e-26
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                         
Query: 335   ggcggatgcgggacgcgtacgcgcggctggacaggacggagatgagcatctgggagtgca 394
             ||||||||||||| | |||||   || |||||| |||||||||| | |||||||||||||
Sbjct: 31109 ggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgca 31168

                                                                        
Query: 395   tcgagctgnctcacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatc 453
             ||||||||    ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 31169 tcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatc 31227



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                         
Query: 186   ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 245
             |||||||||||||||||||||||||  ||||||||| ||||||||||||||| || ||||
Sbjct: 29726 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 29785

                 
Query: 246   cagg 249
             ||||
Sbjct: 29786 cagg 29789



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                        
Query: 262   gagtcggagcggaagaagacggtggaggagttctaccgcgtgaaccacatcagccagac 320
             ||||| ||| ||||| |||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 30902 gagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagac 30960



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>dbj|AP003713.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0528E12
          Length = 139750

 Score =  127 bits (64), Expect = 3e-26
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                          
Query: 335    ggcggatgcgggacgcgtacgcgcggctggacaggacggagatgagcatctgggagtgca 394
              ||||||||||||| | |||||   || |||||| |||||||||| | |||||||||||||
Sbjct: 129449 ggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgca 129508

                                                                         
Query: 395    tcgagctgnctcacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatc 453
              ||||||||    ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 129509 tcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatc 129567



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                          
Query: 186    ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 245
              |||||||||||||||||||||||||  ||||||||| ||||||||||||||| || ||||
Sbjct: 128066 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 128125

                  
Query: 246    cagg 249
              ||||
Sbjct: 128126 cagg 128129



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                         
Query: 262    gagtcggagcggaagaagacggtggaggagttctaccgcgtgaaccacatcagccagac 320
              ||||| ||| ||||| |||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 129242 gagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagac 129300



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>gb|BT018941.1| Zea mays clone Contig87.F mRNA sequence
          Length = 783

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                          
Query: 407 acgagttcatcgacgacagcgaccccgacctcgacatgccgcagatc 453
           ||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 774 acgagttcatcgacgacagcgacccggacctggacatgccccagatc 728



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>gb|DQ324854.1| Azospirillum brasilense putative anti-sigma E gene, complete cds
          Length = 696

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 193 gtgctcgacggcggcttcaccg 214
           ||||||||||||||||||||||
Sbjct: 508 gtgctcgacggcggcttcaccg 529



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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 186     ggagctcgtgctcgacggcggcttcaccg 214
               |||||||||| ||||||||||||| ||||
Sbjct: 1658588 ggagctcgtgatcgacggcggctttaccg 1658616



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>emb|BX055800.1|CNS09F7W Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC34CC07 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 641

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 123 catcatcatcgaccagactcagttc 147
           ||||||||||||||||| |||||||
Sbjct: 414 catcatcatcgaccagaatcagttc 438



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 61       ctccgccgctctcgctgccgcgaga 85
                |||||||||||| ||||||||||||
Sbjct: 10056850 ctccgccgctcttgctgccgcgaga 10056826



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 61       ctccgccgctctcgctgccgcgaga 85
                |||||||||||| ||||||||||||
Sbjct: 10056735 ctccgccgctcttgctgccgcgaga 10056711



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>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 145890

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 61     ctccgccgctctcgctgccgcgaga 85
              |||||||||||| ||||||||||||
Sbjct: 105771 ctccgccgctcttgctgccgcgaga 105795



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>emb|AL732642.4|CNS08C9H Oryza sativa chromosome 12, . BAC OSJNBb0071E08 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 132906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 61   ctccgccgctctcgctgccgcgaga 85
            |||||||||||| ||||||||||||
Sbjct: 1224 ctccgccgctcttgctgccgcgaga 1248



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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 276     gaagacggtggaggagttcta 296
               |||||||||||||||||||||
Sbjct: 3065647 gaagacggtggaggagttcta 3065627



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>ref|NM_111903.1| Arabidopsis thaliana ATNAP7 AT3G10670 (ATNAP7) mRNA, complete cds
          Length = 1350

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 270 gcggaagaagacggtggagg 289
           ||||||||||||||||||||
Sbjct: 67  gcggaagaagacggtggagg 48



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>gb|DQ022656.1| Azospirillum brasilense OxyR (oxyR), AhpC (ahpC), and AhpF (ahpF)
            genes, complete cds; and oxidoreductase gene, partial cds
          Length = 4471

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 410  agttcatcgacgacagcgaccccgacct 437
            |||||||||||| ||||||| |||||||
Sbjct: 1444 agttcatcgacgtcagcgacgccgacct 1471



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>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome
          Length = 138390

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   ggacgcgtacgcgcggctgg 364
             ||||||||||||||||||||
Sbjct: 33662 ggacgcgtacgcgcggctgg 33681



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>ref|XM_382977.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG02801.1)
            partial mRNA
          Length = 2130

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 153  ggcggcggagaggaaggtcg 172
            ||||||||||||||||||||
Sbjct: 1629 ggcggcggagaggaaggtcg 1610



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>gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence,
             complete sequence
          Length = 80379

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   gcggaagaagacggtggagg 289
             ||||||||||||||||||||
Sbjct: 79087 gcggaagaagacggtggagg 79068



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>gb|AY035125.1| Arabidopsis thaliana putative ABC transporter ATPase (At3g10670)
           mRNA, complete cds
          Length = 1368

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 270 gcggaagaagacggtggagg 289
           ||||||||||||||||||||
Sbjct: 67  gcggaagaagacggtggagg 48



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>gb|AC175207.2| Sporobolomyces roseus clone JGIBAIF-9L20, complete sequence
          Length = 36012

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   ggaagaagacggtggaggag 291
             ||||||||||||||||||||
Sbjct: 29296 ggaagaagacggtggaggag 29277



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>gb|AE005984.1| Caulobacter crescentus CB15 section 310 of 359 of the complete genome
          Length = 10212

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 146  tcgatgcggcggcggagagg 165
            ||||||||||||||||||||
Sbjct: 5804 tcgatgcggcggcggagagg 5785



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>emb|BX822291.1|CNS0A774 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB26ZH03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1277

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 270 gcggaagaagacggtggagg 289
           ||||||||||||||||||||
Sbjct: 54  gcggaagaagacggtggagg 35



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>emb|BX824893.1|CNS0A6YG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH80ZD10 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1303

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 270 gcggaagaagacggtggagg 289
           ||||||||||||||||||||
Sbjct: 52  gcggaagaagacggtggagg 33



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>emb|BX824371.1|CNS0A6WF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH44ZA08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1276

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 270 gcggaagaagacggtggagg 289
           ||||||||||||||||||||
Sbjct: 52  gcggaagaagacggtggagg 33



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>emb|BX823288.1|CNS0A6IN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS1ZF02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1311

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 270 gcggaagaagacggtggagg 289
           ||||||||||||||||||||
Sbjct: 53  gcggaagaagacggtggagg 34



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>gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete
             sequence
          Length = 118107

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   gcggaagaagacggtggagg 289
             ||||||||||||||||||||
Sbjct: 10036 gcggaagaagacggtggagg 10017



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>gb|AY085010.1| Arabidopsis thaliana clone 124334 mRNA, complete sequence
          Length = 1350

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 270 gcggaagaagacggtggagg 289
           ||||||||||||||||||||
Sbjct: 67  gcggaagaagacggtggagg 48



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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 197     tcgacggcggcttcaccgtg 216
               ||||||||||||||||||||
Sbjct: 4447233 tcgacggcggcttcaccgtg 4447214



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 196     ctcgacggcggcttcaccgt 215
               ||||||||||||||||||||
Sbjct: 1339723 ctcgacggcggcttcaccgt 1339704


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,455,637
Number of Sequences: 3902068
Number of extensions: 2455637
Number of successful extensions: 55741
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55250
Number of HSP's gapped (non-prelim): 491
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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