| Clone Name | bart60f02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X75778.1|ASTCPP1A A.sativa (Pewi) ASTCP-K36 mRNA for t complex polypeptide 1 Length = 2022 Score = 502 bits (253), Expect = e-139 Identities = 295/309 (95%) Strand = Plus / Plus Query: 140 cggcggccatggcgctcgccttcgacgagtacgggcgacccttcatcatcctccgggagc 199 |||||||||||||||||| ||||||||||||| |||| ||||||||||||||| |||||| Sbjct: 125 cggcggccatggcgctcgacttcgacgagtactggcggcccttcatcatcctcagggagc 184 Query: 200 aggagaagaagtcgcggctgcaggggctcgatgcgcagaaggccaacatcgccgccggca 259 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 185 aggagaagaagtcgcggctgcaggggctcgacgcgcagaaggccaacatcgccgccggca 244 Query: 260 agtccgtcgcgcgcatcctccgcacctccctcggccccaagggcatggataagatgctcc 319 ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| Sbjct: 245 agtccgtcgcgcgcatcctccgcacgtccctcgggcccaagggcatggacaagatgctcc 304 Query: 320 agtcccccgacggcgacgtcaccatcaccaatgatggggcaaccatcctggagctaatgg 379 ||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| Sbjct: 305 agtcccccgacggcgacgttaccatcactaatgatggggcgaccatcctggagctaatgg 364 Query: 380 atgttgacaaccagattgcgaagctcatggtggagttgtcccgcagtcaagactatgaca 439 ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| Sbjct: 365 atgttgacaaccagattgctaagctgatggtggagttgtcacgcagtcaagactatgaca 424 Query: 440 ttggagatg 448 ||||||||| Sbjct: 425 ttggagatg 433 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 85 ctcctcgcgcgatccgcccttccag 109 |||| |||||||||||||||||||| Sbjct: 67 ctccccgcgcgatccgcccttccag 91
>emb|X75777.1|ASTCPP1 A.sativa (Pewi) ASTCP-K19 mRNA for t complex polypeptide 1 Length = 2039 Score = 438 bits (221), Expect = e-120 Identities = 296/321 (92%) Strand = Plus / Plus Query: 128 gcgctagcgctccggcggccatggcgctcgccttcgacgagtacgggcgacccttcatca 187 |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 88 gcgccagcgcttcggcggccatggcgctcgccttcgacgagtacgggcggcccttcatca 147 Query: 188 tcctccgggagcaggagaagaagtcgcggctgcaggggctcgatgcgcagaaggccaaca 247 ||||| | ||||||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct: 148 tcctcagagagcaggagaagaagtcgcggctgcagggtctcgacgcgcacaaggccaaca 207 Query: 248 tcgccgccggcaagtccgtcgcgcgcatcctccgcacctccctcggccccaagggcatgg 307 ||||||||| |||| | ||||||||||||||||||| ||||| || ||||||||||||| Sbjct: 208 tcgccgccgccaaggctatcgcgcgcatcctccgcacgtcccttgggcccaagggcatgg 267 Query: 308 ataagatgctccagtcccccgacggcgacgtcaccatcaccaatgatggggcaaccatcc 367 | ||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||| Sbjct: 268 acaagatgctccagtcccccgacggcgacgttaccatcactaatgacggggcgaccatcc 327 Query: 368 tggagctaatggatgttgacaaccagattgcgaagctcatggtggagttgtcccgcagtc 427 ||||||||||||| ||||||||||||||||| ||||| ||||||||||||| ||||||| Sbjct: 328 tggagctaatggacgttgacaaccagattgcaaagctgttggtggagttgtcacgcagtc 387 Query: 428 aagactatgacattggagatg 448 ||||||||||||||||||||| Sbjct: 388 aagactatgacattggagatg 408
>dbj|AK105701.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-D07, full insert sequence Length = 2088 Score = 381 bits (192), Expect = e-102 Identities = 276/304 (90%) Strand = Plus / Plus Query: 145 gccatggcgctcgccttcgacgagtacgggcgacccttcatcatcctccgggagcaggag 204 ||||||||||| ||||||||||||| ||| || |||||||||||||| || ||||||||| Sbjct: 91 gccatggcgctggccttcgacgagttcggccgccccttcatcatcctgcgtgagcaggag 150 Query: 205 aagaagtcgcggctgcaggggctcgatgcgcagaaggccaacatcgccgccggcaagtcc 264 |||||||||||||||| || ||||| || ||||||||||||||||||||||||||| || Sbjct: 151 aagaagtcgcggctgcgcggcctcgacgcccagaaggccaacatcgccgccggcaaggcc 210 Query: 265 gtcgcgcgcatcctccgcacctccctcggccccaagggcatggataagatgctccagtcc 324 ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 211 gtcgcccgcatcctccgcacctcgctcggccccaagggcatggacaagatgctccagtcc 270 Query: 325 cccgacggcgacgtcaccatcaccaatgatggggcaaccatcctggagctaatggatgtt 384 ||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||| Sbjct: 271 cccgacggcgacgtcaccatcacaaatgatggcgcaacgatcctggagcaaatggatgtg 330 Query: 385 gacaaccagattgcgaagctcatggtggagttgtcccgcagtcaagactatgacattgga 444 |||||||| || |||||||| ||||||||| ||||| ||||||||||||| || ||||| Sbjct: 331 gacaaccaaatcgcgaagctgatggtggagctgtcctgcagtcaagactacgagattggg 390 Query: 445 gatg 448 |||| Sbjct: 391 gatg 394
>dbj|AK067114.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095K16, full insert sequence Length = 2100 Score = 381 bits (192), Expect = e-102 Identities = 276/304 (90%) Strand = Plus / Plus Query: 145 gccatggcgctcgccttcgacgagtacgggcgacccttcatcatcctccgggagcaggag 204 ||||||||||| ||||||||||||| ||| || |||||||||||||| || ||||||||| Sbjct: 105 gccatggcgctggccttcgacgagttcggccgccccttcatcatcctgcgtgagcaggag 164 Query: 205 aagaagtcgcggctgcaggggctcgatgcgcagaaggccaacatcgccgccggcaagtcc 264 |||||||||||||||| || ||||| || ||||||||||||||||||||||||||| || Sbjct: 165 aagaagtcgcggctgcgcggcctcgacgcccagaaggccaacatcgccgccggcaaggcc 224 Query: 265 gtcgcgcgcatcctccgcacctccctcggccccaagggcatggataagatgctccagtcc 324 ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 225 gtcgcccgcatcctccgcacctcgctcggccccaagggcatggacaagatgctccagtcc 284 Query: 325 cccgacggcgacgtcaccatcaccaatgatggggcaaccatcctggagctaatggatgtt 384 ||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||| Sbjct: 285 cccgacggcgacgtcaccatcacaaatgatggcgcaacgatcctggagcaaatggatgtg 344 Query: 385 gacaaccagattgcgaagctcatggtggagttgtcccgcagtcaagactatgacattgga 444 |||||||| || |||||||| ||||||||| ||||| ||||||||||||| || ||||| Sbjct: 345 gacaaccaaatcgcgaagctgatggtggagctgtcctgcagtcaagactacgagattggg 404 Query: 445 gatg 448 |||| Sbjct: 405 gatg 408
>gb|AY103729.1| Zea mays PCO099347 mRNA sequence Length = 2083 Score = 339 bits (171), Expect = 5e-90 Identities = 264/295 (89%) Strand = Plus / Plus Query: 143 cggccatggcgctcgccttcgacgagtacgggcgacccttcatcatcctccgggagcagg 202 ||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||| Sbjct: 116 cggccatggcgctcgccttcgacgagttcgggcgccccttcattatcctgcgggagcagg 175 Query: 203 agaagaagtcgcggctgcaggggctcgatgcgcagaaggccaacatcgccgccggcaagt 262 |||||||| |||| || | |||||| || ||||||||||||||||||||| | | |||| Sbjct: 176 agaagaagacgcgccttcgggggcttgacgcgcagaaggccaacatcgcctcggccaagg 235 Query: 263 ccgtcgcgcgcatcctccgcacctccctcggccccaagggcatggataagatgctccagt 322 |||||||||| ||||||||||| || || || |||||||||||||| ||||||||||||| Sbjct: 236 ccgtcgcgcggatcctccgcacgtcgctgggacccaagggcatggacaagatgctccagt 295 Query: 323 cccccgacggcgacgtcaccatcaccaatgatggggcaaccatcctggagctaatggatg 382 |||||||||||||||||| |||||| |||||||| || ||||||||||||| ||||||| Sbjct: 296 cccccgacggcgacgtcatcatcacaaatgatggagcgaccatcctggagcagatggatg 355 Query: 383 ttgacaaccagattgcgaagctcatggtggagttgtcccgcagtcaagactatga 437 ||||||||||||| || ||||| ||||||||| ||||||| |||||||||||||| Sbjct: 356 ttgacaaccagatagcaaagctgatggtggagctgtcccgtagtcaagactatga 410
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 281 bits (142), Expect = 9e-73 Identities = 187/202 (92%) Strand = Plus / Minus Query: 145 gccatggcgctcgccttcgacgagtacgggcgacccttcatcatcctccgggagcaggag 204 ||||||||||| ||||||||||||| ||| || |||||||||||||| || ||||||||| Sbjct: 21254720 gccatggcgctggccttcgacgagttcggccgccccttcatcatcctgcgtgagcaggag 21254661 Query: 205 aagaagtcgcggctgcaggggctcgatgcgcagaaggccaacatcgccgccggcaagtcc 264 |||||||||||||||| || ||||| || ||||||||||||||||||||||||||| || Sbjct: 21254660 aagaagtcgcggctgcgcggcctcgacgcccagaaggccaacatcgccgccggcaaggcc 21254601 Query: 265 gtcgcgcgcatcctccgcacctccctcggccccaagggcatggataagatgctccagtcc 324 ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 21254600 gtcgcccgcatcctccgcacctcgctcggccccaagggcatggacaagatgctccagtcc 21254541 Query: 325 cccgacggcgacgtcaccatca 346 |||||||||||||||||||||| Sbjct: 21254540 cccgacggcgacgtcaccatca 21254519 Score = 103 bits (52), Expect = 5e-19 Identities = 88/100 (88%) Strand = Plus / Minus Query: 349 aatgatggggcaaccatcctggagctaatggatgttgacaaccagattgcgaagctcatg 408 |||||||| ||||| |||||||||| ||||||||| |||||||| || |||||||| ||| Sbjct: 21254001 aatgatggcgcaacgatcctggagcaaatggatgtggacaaccaaatcgcgaagctgatg 21253942 Query: 409 gtggagttgtcccgcagtcaagactatgacattggagatg 448 |||||| ||||| ||||||||||||| || ||||| |||| Sbjct: 21253941 gtggagctgtcctgcagtcaagactacgagattggggatg 21253902 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 ccggcggccatggcgctcgcc 159 ||||||||||||||||||||| Sbjct: 19009403 ccggcggccatggcgctcgcc 19009423
>dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0656E03 Length = 181786 Score = 281 bits (142), Expect = 9e-73 Identities = 187/202 (92%) Strand = Plus / Minus Query: 145 gccatggcgctcgccttcgacgagtacgggcgacccttcatcatcctccgggagcaggag 204 ||||||||||| ||||||||||||| ||| || |||||||||||||| || ||||||||| Sbjct: 50096 gccatggcgctggccttcgacgagttcggccgccccttcatcatcctgcgtgagcaggag 50037 Query: 205 aagaagtcgcggctgcaggggctcgatgcgcagaaggccaacatcgccgccggcaagtcc 264 |||||||||||||||| || ||||| || ||||||||||||||||||||||||||| || Sbjct: 50036 aagaagtcgcggctgcgcggcctcgacgcccagaaggccaacatcgccgccggcaaggcc 49977 Query: 265 gtcgcgcgcatcctccgcacctccctcggccccaagggcatggataagatgctccagtcc 324 ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 49976 gtcgcccgcatcctccgcacctcgctcggccccaagggcatggacaagatgctccagtcc 49917 Query: 325 cccgacggcgacgtcaccatca 346 |||||||||||||||||||||| Sbjct: 49916 cccgacggcgacgtcaccatca 49895 Score = 103 bits (52), Expect = 5e-19 Identities = 88/100 (88%) Strand = Plus / Minus Query: 349 aatgatggggcaaccatcctggagctaatggatgttgacaaccagattgcgaagctcatg 408 |||||||| ||||| |||||||||| ||||||||| |||||||| || |||||||| ||| Sbjct: 49377 aatgatggcgcaacgatcctggagcaaatggatgtggacaaccaaatcgcgaagctgatg 49318 Query: 409 gtggagttgtcccgcagtcaagactatgacattggagatg 448 |||||| ||||| ||||||||||||| || ||||| |||| Sbjct: 49317 gtggagctgtcctgcagtcaagactacgagattggggatg 49278
>ref|NM_102295.3| Arabidopsis thaliana ATP binding / protein binding AT1G24510 transcript variant AT1G24510.1 mRNA, complete cds Length = 1906 Score = 91.7 bits (46), Expect = 2e-15 Identities = 178/222 (80%) Strand = Plus / Plus Query: 227 tcgatgcgcagaaggccaacatcgccgccggcaagtccgtcgcgcgcatcctccgcacct 286 ||||||| ||||| ||||| |||||||| || || |||| || || ||||| || ||| Sbjct: 184 tcgatgctcagaaagccaatatcgccgctggtaaagccgtggctcggatccttcgatcct 243 Query: 287 ccctcggccccaagggcatggataagatgctccagtcccccgacggcgacgtcaccatca 346 | || || ||||| || |||||||||||||| || || ||||| ||| ||||||||| Sbjct: 244 ctcttggacccaaaggaatggataagatgcttcaaggacctgacggagacatcaccatca 303 Query: 347 ccaatgatggggcaaccatcctggagctaatggatgttgacaaccagattgcgaagctca 406 | || ||||| || || || |||||| ||||||||||||||||||||||||||| || | Sbjct: 304 caaacgatggtgctacgatattggagcaaatggatgttgacaaccagattgcgaaactaa 363 Query: 407 tggtggagttgtcccgcagtcaagactatgacattggagatg 448 ||||||| |||| || ||||| || ||||| ||||| |||| Sbjct: 364 tggtggaactgtcgcggagtcaggattatgaaattggtgatg 405
>gb|BT000818.1| Arabidopsis thaliana T-complex chaperonin protein , epsilon subunit (At1g24510/F21J9_150) mRNA, complete cds Length = 1608 Score = 91.7 bits (46), Expect = 2e-15 Identities = 178/222 (80%) Strand = Plus / Plus Query: 227 tcgatgcgcagaaggccaacatcgccgccggcaagtccgtcgcgcgcatcctccgcacct 286 ||||||| ||||| ||||| |||||||| || || |||| || || ||||| || ||| Sbjct: 80 tcgatgctcagaaagccaatatcgccgctggtaaagccgtggctcggatccttcgatcct 139 Query: 287 ccctcggccccaagggcatggataagatgctccagtcccccgacggcgacgtcaccatca 346 | || || ||||| || |||||||||||||| || || ||||| ||| ||||||||| Sbjct: 140 ctcttggacccaaaggaatggataagatgcttcaaggacctgacggagacatcaccatca 199 Query: 347 ccaatgatggggcaaccatcctggagctaatggatgttgacaaccagattgcgaagctca 406 | || ||||| || || || |||||| ||||||||||||||||||||||||||| || | Sbjct: 200 caaacgatggtgctacgatattggagcaaatggatgttgacaaccagattgcgaaactaa 259 Query: 407 tggtggagttgtcccgcagtcaagactatgacattggagatg 448 ||||||| |||| || ||||| || ||||| ||||| |||| Sbjct: 260 tggtggaactgtcgcggagtcaggattatgaaattggtgatg 301
>gb|AY075611.1| Arabidopsis thaliana At1g24510/F21J9_150 mRNA, complete cds Length = 1885 Score = 91.7 bits (46), Expect = 2e-15 Identities = 178/222 (80%) Strand = Plus / Plus Query: 227 tcgatgcgcagaaggccaacatcgccgccggcaagtccgtcgcgcgcatcctccgcacct 286 ||||||| ||||| ||||| |||||||| || || |||| || || ||||| || ||| Sbjct: 184 tcgatgctcagaaagccaatatcgccgctggtaaagccgtggctcggatccttcgatcct 243 Query: 287 ccctcggccccaagggcatggataagatgctccagtcccccgacggcgacgtcaccatca 346 | || || ||||| || |||||||||||||| || || ||||| ||| ||||||||| Sbjct: 244 ctcttggacccaaaggaatggataagatgcttcaaggacctgacggagacatcaccatca 303 Query: 347 ccaatgatggggcaaccatcctggagctaatggatgttgacaaccagattgcgaagctca 406 | || ||||| || || || |||||| ||||||||||||||||||||||||||| || | Sbjct: 304 caaacgatggtgctacgatattggagcaaatggatgttgacaaccagattgcgaaactaa 363 Query: 407 tggtggagttgtcccgcagtcaagactatgacattggagatg 448 ||||||| |||| || ||||| || ||||| ||||| |||| Sbjct: 364 tggtggaactgtcgcggagtcaggattatgaaattggtgatg 405
>emb|X85013.1|CSRNATCP1 C.sativus mRNA for T-complex polypeptide 1 Length = 2030 Score = 77.8 bits (39), Expect = 3e-11 Identities = 123/151 (81%) Strand = Plus / Plus Query: 298 aagggcatggataagatgctccagtcccccgacggcgacgtcaccatcaccaatgatggg 357 ||||| ||||| |||||||||||| |||||| || ||||| || || || |||||||| Sbjct: 195 aagggtatggacaagatgctccagagccccgatggggacgttacaataacaaatgatggt 254 Query: 358 gcaaccatcctggagctaatggatgttgacaaccagattgcgaagctcatggtggagttg 417 ||||| ||| |||||| |||||||||||||| || ||||| || | ||||| |||||| Sbjct: 255 gcaacaatcttggagcagatggatgttgacaatcaaattgccaaattgatggttgagttg 314 Query: 418 tcccgcagtcaagactatgacattggagatg 448 || || ||||| || ||||| ||||| |||| Sbjct: 315 tctcgaagtcaggattatgagattggtgatg 345
>ref|NM_202178.1| Arabidopsis thaliana ATP binding / protein binding AT1G24510 transcript variant AT1G24510.2 mRNA, complete cds Length = 2157 Score = 73.8 bits (37), Expect = 4e-10 Identities = 70/81 (86%) Strand = Plus / Plus Query: 368 tggagctaatggatgttgacaaccagattgcgaagctcatggtggagttgtcccgcagtc 427 |||||| ||||||||||||||||||||||||||| || |||||||| |||| || |||| Sbjct: 576 tggagcaaatggatgttgacaaccagattgcgaaactaatggtggaactgtcgcggagtc 635 Query: 428 aagactatgacattggagatg 448 | || ||||| ||||| |||| Sbjct: 636 aggattatgaaattggtgatg 656
>gb|AC141435.28| Medicago truncatula clone mth2-21i11, complete sequence Length = 132497 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 349 aatgatggggcaaccatcctggagctaatggatgttgacaaccagattgcgaagctcatg 408 |||||||| ||||| || |||||| |||||||| || ||||||||||||||||| ||| Sbjct: 104111 aatgatggagcaacgatattggagcagatggatgtagataaccagattgcgaagctgatg 104170 Query: 409 gtggagttgtcccgcagtcaagactatga 437 ||||||||||| | ||||| |||||||| Sbjct: 104171 gtggagttgtcgaggagtcaggactatga 104199 Score = 71.9 bits (36), Expect = 2e-09 Identities = 99/120 (82%) Strand = Plus / Plus Query: 226 ctcgatgcgcagaaggccaacatcgccgccggcaagtccgtcgcgcgcatcctccgcacc 285 |||||||| ||||| || |||||| | ||||| || ||||||| || || ||||| ||| Sbjct: 103772 ctcgatgctcagaaagctaacatctctgccggtaaagccgtcgctcgtattctccgtacc 103831 Query: 286 tccctcggccccaagggcatggataagatgctccagtcccccgacggcgacgtcaccatc 345 |||||||| || ||||| |||||||||||||| || ||||||||| ||||||| |||| Sbjct: 103832 tccctcggtccgaagggtatggataagatgcttcaaagccccgacggtgacgtcatcatc 103891
>gb|AC000103.2|AC000103 Genomic sequence for Arabidopsis thaliana BAC F21J9 from chromosome I, complete sequence Length = 99392 Score = 73.8 bits (37), Expect = 4e-10 Identities = 70/81 (86%) Strand = Plus / Minus Query: 368 tggagctaatggatgttgacaaccagattgcgaagctcatggtggagttgtcccgcagtc 427 |||||| ||||||||||||||||||||||||||| || |||||||| |||| || |||| Sbjct: 48498 tggagcaaatggatgttgacaaccagattgcgaaactaatggtggaactgtcgcggagtc 48439 Query: 428 aagactatgacattggagatg 448 | || ||||| ||||| |||| Sbjct: 48438 aggattatgaaattggtgatg 48418
>emb|CT030174.3| M.truncatula DNA sequence from clone MTH2-71J12 on chromosome 3, complete sequence Length = 133240 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 349 aatgatggggcaaccatcctggagctaatggatgttgacaaccagattgcgaagctcatg 408 |||||||| ||||| || |||||| |||||||| || ||||||||||||||||| ||| Sbjct: 99752 aatgatggagcaacgatattggagcagatggatgtagataaccagattgcgaagctgatg 99693 Query: 409 gtggagttgtcccgcagtcaagactatga 437 ||||||||||| | ||||| |||||||| Sbjct: 99692 gtggagttgtcgaggagtcaggactatga 99664 Score = 71.9 bits (36), Expect = 2e-09 Identities = 99/120 (82%) Strand = Plus / Minus Query: 226 ctcgatgcgcagaaggccaacatcgccgccggcaagtccgtcgcgcgcatcctccgcacc 285 |||||||| ||||| || |||||| | ||||| || ||||||| || || ||||| ||| Sbjct: 100091 ctcgatgctcagaaagctaacatctctgccggtaaagccgtcgctcgtattctccgtacc 100032 Query: 286 tccctcggccccaagggcatggataagatgctccagtcccccgacggcgacgtcaccatc 345 |||||||| || ||||| |||||||||||||| || ||||||||| ||||||| |||| Sbjct: 100031 tccctcggtccgaagggtatggataagatgcttcaaagccccgacggtgacgtcatcatc 99972
>gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence Length = 187707 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 366 cctggagctaatggatgttgacaaccagattgcgaagctcatggtggagttgtcccgca 424 |||||||| |||||||||||| ||||||||||| ||||| ||||||||| | ||||||| Sbjct: 13215 cctggagcaaatggatgttgataaccagattgctaagctgatggtggagctctcccgca 13273
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 366 cctggagctaatggatgttgacaaccagattgcgaagctcatggtggagttgtcccgca 424 |||||||| |||||||||||| ||||||||||| ||||| ||||||||| | ||||||| Sbjct: 22008671 cctggagcaaatggatgttgataaccagattgctaagctgatggtggagctctcccgca 22008729
>dbj|AK070073.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043F15, full insert sequence Length = 3156 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 366 cctggagctaatggatgttgacaaccagattgcgaagctcatggtggagttgtcccgca 424 |||||||| |||||||||||| ||||||||||| ||||| ||||||||| | ||||||| Sbjct: 315 cctggagcaaatggatgttgataaccagattgctaagctgatggtggagctctcccgca 373
>dbj|AK063744.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-G02, full insert sequence Length = 977 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 366 cctggagctaatggatgttgacaaccagattgcgaagctcatggtggagttgtcccgca 424 |||||||| |||||||||||| ||||||||||| ||||| ||||||||| | ||||||| Sbjct: 328 cctggagcaaatggatgttgataaccagattgctaagctgatggtggagctctcccgca 386
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 366 cctggagctaatggatgttgacaaccagattgcgaagctcatggtggagttgtcccgca 424 |||||||| |||||||||||| ||||||||||| ||||| ||||||||| | ||||||| Sbjct: 22020334 cctggagcaaatggatgttgataaccagattgctaagctgatggtggagctctcccgca 22020392
>emb|BX815337.1|CNS0AAT9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS53ZC04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2067 Score = 65.9 bits (33), Expect = 1e-07 Identities = 69/81 (85%) Strand = Plus / Plus Query: 368 tggagctaatggatgttgacaaccagattgcgaagctcatggtggagttgtcccgcagtc 427 |||||| |||||||||||||||||||||||||| || |||||||| |||| || |||| Sbjct: 580 tggagcaaatggatgttgacaaccagattgcgagactgatggtggaactgtcgcggagtc 639 Query: 428 aagactatgacattggagatg 448 | || ||||| ||||| |||| Sbjct: 640 aggattatgaaattggtgatg 660
>ref|NM_165867.1| Drosophila melanogaster T-complex Chaperonin 5 CG8439-RB, transcript variant B (Cct5), mRNA Length = 1772 Score = 54.0 bits (27), Expect = 4e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 325 cccgacggcgacgtcaccatcaccaatgatggggcaaccatcctggagctaatggatgtt 384 |||||||||||||| || | ||||| ||||| || |||||| || |||| ||||| ||| Sbjct: 118 cccgacggcgacgtgactgtgaccaacgatggcgccaccatcatgaagctgatggaggtt 177 Query: 385 gacaaccagattgcgaagctcatggtg 411 ||| || ||||||| ||||| |||||| Sbjct: 178 gaccacgagattgccaagctgatggtg 204
>ref|NM_078983.2| Drosophila melanogaster T-complex Chaperonin 5 CG8439-RA, transcript variant A (Cct5), mRNA Length = 1992 Score = 54.0 bits (27), Expect = 4e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 325 cccgacggcgacgtcaccatcaccaatgatggggcaaccatcctggagctaatggatgtt 384 |||||||||||||| || | ||||| ||||| || |||||| || |||| ||||| ||| Sbjct: 338 cccgacggcgacgtgactgtgaccaacgatggcgccaccatcatgaagctgatggaggtt 397 Query: 385 gacaaccagattgcgaagctcatggtg 411 ||| || ||||||| ||||| |||||| Sbjct: 398 gaccacgagattgccaagctgatggtg 424
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 248 tcgccgccggcaagtccgtcgcgcgcatcctccgcacctccctcggccccaaggg 302 ||||||||||| || |||| ||||||||||||| | ||| ||||||| ||||||| Sbjct: 21466341 tcgccgccggcgaggccgtggcgcgcatcctccacgccttcctcggcaccaaggg 21466395
>gb|AC007440.6|AC007440 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone BACR37I09, complete sequence Length = 184621 Score = 54.0 bits (27), Expect = 4e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 325 cccgacggcgacgtcaccatcaccaatgatggggcaaccatcctggagctaatggatgtt 384 |||||||||||||| || | ||||| ||||| || |||||| || |||| ||||| ||| Sbjct: 18760 cccgacggcgacgtgactgtgaccaacgatggcgccaccatcatgaagctgatggaggtt 18819 Query: 385 gacaaccagattgcgaagctcatggtg 411 ||| || ||||||| ||||| |||||| Sbjct: 18820 gaccacgagattgccaagctgatggtg 18846
>gb|AC007475.7|AC007475 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone BACR04E21, complete sequence Length = 173613 Score = 54.0 bits (27), Expect = 4e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 325 cccgacggcgacgtcaccatcaccaatgatggggcaaccatcctggagctaatggatgtt 384 |||||||||||||| || | ||||| ||||| || |||||| || |||| ||||| ||| Sbjct: 169265 cccgacggcgacgtgactgtgaccaacgatggcgccaccatcatgaagctgatggaggtt 169324 Query: 385 gacaaccagattgcgaagctcatggtg 411 ||| || ||||||| ||||| |||||| Sbjct: 169325 gaccacgagattgccaagctgatggtg 169351
>gb|AF172635.1| Drosophila melanogaster GM12270 full insert cDNA Length = 1938 Score = 54.0 bits (27), Expect = 4e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 325 cccgacggcgacgtcaccatcaccaatgatggggcaaccatcctggagctaatggatgtt 384 |||||||||||||| || | ||||| ||||| || |||||| || |||| ||||| ||| Sbjct: 281 cccgacggcgacgtgactgtgaccaacgatggcgccaccatcatgaagctgatggaggtt 340 Query: 385 gacaaccagattgcgaagctcatggtg 411 ||| || ||||||| ||||| |||||| Sbjct: 341 gaccacgagattgccaagctgatggtg 367
>gb|AE003823.3| Drosophila melanogaster chromosome 2R, section 27 of 73 of the complete sequence Length = 292919 Score = 54.0 bits (27), Expect = 4e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 325 cccgacggcgacgtcaccatcaccaatgatggggcaaccatcctggagctaatggatgtt 384 |||||||||||||| || | ||||| ||||| || |||||| || |||| ||||| ||| Sbjct: 180110 cccgacggcgacgtgactgtgaccaacgatggcgccaccatcatgaagctgatggaggtt 180169 Query: 385 gacaaccagattgcgaagctcatggtg 411 ||| || ||||||| ||||| |||||| Sbjct: 180170 gaccacgagattgccaagctgatggtg 180196
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 248 tcgccgccggcaagtccgtcgcgcgcatcctccgcacctccctcggccccaaggg 302 ||||||||||| || |||| ||||||||||||| | ||| ||||||| ||||||| Sbjct: 21394662 tcgccgccggcgaggccgtggcgcgcatcctccacgccttcctcggcaccaaggg 21394716
>ref|XM_470005.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2070 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 279 ccgcacctccctcggccccaagggcatggataagatg 315 ||||||||||||||||||||| || ||| |||||||| Sbjct: 234 ccgcacctccctcggccccaacggaatgaataagatg 270
>gb|BC066538.1| Danio rerio t-complex polypeptide 1, mRNA (cDNA clone MGC:77497 IMAGE:6524710), complete cds Length = 1909 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 334 gacgtcaccatcaccaatgatggggcaaccatcctggagct 374 ||||| |||||||||||||| ||||| ||||||||| |||| Sbjct: 158 gacgtgaccatcaccaatgacggggccaccatcctgaagct 198
>gb|BC044397.1| Danio rerio t-complex polypeptide 1, mRNA (cDNA clone MGC:55424 IMAGE:2639388), complete cds Length = 1951 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 334 gacgtcaccatcaccaatgatggggcaaccatcctggagct 374 ||||| |||||||||||||| ||||| ||||||||| |||| Sbjct: 216 gacgtgaccatcaccaatgacggggccaccatcctgaagct 256
>emb|X97841.1|ASHSC70H A.sativa mRNA for hsc70 protein Length = 292 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 338 tcaccatcaccaatgatggggcaaccatcctgg 370 ||||||| |||||||||||||| |||||||||| Sbjct: 257 tcaccattaccaatgatggggccaccatcctgg 289
>ref|NM_131230.1| Danio rerio t-complex polypeptide 1 (tcp1), mRNA Length = 1897 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 334 gacgtcaccatcaccaatgatggggcaaccatcctggagct 374 ||||| |||||||||||||| ||||| ||||||||| |||| Sbjct: 158 gacgtgaccatcaccaatgacggggccaccatcctgaagct 198
>gb|AF164028.1|AF164028 Danio rerio clone TA2 t-complex polypeptide 1 (Tcp1) mRNA, partial cds Length = 1661 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 334 gacgtcaccatcaccaatgatggggcaaccatcctggagct 374 ||||| |||||||||||||| ||||| ||||||||| |||| Sbjct: 96 gacgtgaccatcaccaatgacggggccaccatcctgaagct 136
>dbj|AK100651.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D11, full insert sequence Length = 2070 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 279 ccgcacctccctcggccccaagggcatggataagatg 315 ||||||||||||||||||||| || ||| |||||||| Sbjct: 234 ccgcacctccctcggccccaacggaatgaataagatg 270
>gb|AF143493.1|AF143493 Danio rerio t-complex polypeptide 1 (TCP1) mRNA, complete cds Length = 1897 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 334 gacgtcaccatcaccaatgatggggcaaccatcctggagct 374 ||||| |||||||||||||| ||||| ||||||||| |||| Sbjct: 158 gacgtgaccatcaccaatgacggggccaccatcctgaagct 198
>emb|CR702647.2|CNS0G543 Tetraodon nigroviridis full-length cDNA Length = 1848 Score = 48.1 bits (24), Expect = 0.025 Identities = 63/76 (82%) Strand = Plus / Plus Query: 344 tcaccaatgatggggcaaccatcctggagctaatggatgttgacaaccagattgcgaagc 403 ||||||||||||| || |||||||| | | |||||||| ||| |||||||||| || | Sbjct: 294 tcaccaatgatggagctaccatccttaacatgatggatgtggaccaccagattgctaaac 353 Query: 404 tcatggtggagttgtc 419 | ||||||||| |||| Sbjct: 354 tgatggtggagctgtc 369
>ref|XM_505288.1| Yarrowia lipolytica CLIB122, YALI0F11473g predicted mRNA Length = 1578 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Plus Query: 292 ggccccaagggcatggataagatgctccagtc 323 ||||||||||||||||| ||| |||||||||| Sbjct: 112 ggccccaagggcatggacaagctgctccagtc 143
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 139 ccggcggccatggcgctcgccttc 162 |||||||||||||||||||||||| Sbjct: 1511665 ccggcggccatggcgctcgccttc 1511642
>gb|AE005109.1| Halobacterium sp. NRC-1 section 140 of 170 of the complete genome Length = 12026 Score = 48.1 bits (24), Expect = 0.025 Identities = 65/76 (85%), Gaps = 2/76 (2%) Strand = Plus / Minus Query: 244 aacatcgccgccggcaagtccgtcgcgcgcatcc-tccgcacctccctcggccccaaggg 302 |||||| ||||||||||| ||||||| || |||| | |||||| | |||||||| || || Sbjct: 1779 aacatcaccgccggcaaggccgtcgc-cgaatccgttcgcaccacgctcggcccgaaagg 1721 Query: 303 catggataagatgctc 318 |||||| ||||||||| Sbjct: 1720 catggacaagatgctc 1705
>gb|AF188130.1|AF188130 Oxytricha nova clone 11 chaperonin beta subunit gene, complete cds Length = 1893 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Plus Query: 289 ctcggccccaagggcatggataagatgctcca 320 ||||| |||||||||||||||||||| ||||| Sbjct: 269 ctcggacccaagggcatggataagattctcca 300
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 48.1 bits (24), Expect = 0.025 Identities = 30/32 (93%) Strand = Plus / Minus Query: 292 ggccccaagggcatggataagatgctccagtc 323 ||||||||||||||||| ||| |||||||||| Sbjct: 1518309 ggccccaagggcatggacaagctgctccagtc 1518278
>emb|AJ006550.1|PO6550 Pyrodictium occultum thsB gene Length = 1719 Score = 46.1 bits (23), Expect = 0.098 Identities = 26/27 (96%) Strand = Plus / Plus Query: 291 cggccccaagggcatggataagatgct 317 |||||||||||||||||| |||||||| Sbjct: 171 cggccccaagggcatggacaagatgct 197
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.098 Identities = 47/55 (85%) Strand = Plus / Plus Query: 248 tcgccgccggcaagtccgtcgcgcgcatcctccgcacctccctcggccccaaggg 302 ||||||||||| || |||| || |||||||||| | ||| ||||||| ||||||| Sbjct: 17595207 tcgccgccggcgaggccgtggcacgcatcctccacgccttcctcggcaccaaggg 17595261
>dbj|AP003054.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0436D06 Length = 148246 Score = 46.1 bits (23), Expect = 0.098 Identities = 47/55 (85%) Strand = Plus / Plus Query: 248 tcgccgccggcaagtccgtcgcgcgcatcctccgcacctccctcggccccaaggg 302 ||||||||||| || |||| || |||||||||| | ||| ||||||| ||||||| Sbjct: 112779 tcgccgccggcgaggccgtggcacgcatcctccacgccttcctcggcaccaaggg 112833
>emb|X70101.1|GGHSP90B G.gallus hsp 90 beta mRNA for heat shock protein 90 beta Length = 2633 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 405 catggtggagttgtcccgcagt 426 |||||||||||||||||||||| Sbjct: 1854 catggtggagttgtcccgcagt 1833
>ref|NM_206959.1| Gallus gallus heat shock 90kDa protein 1, beta (HSPCB), mRNA Length = 2633 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 405 catggtggagttgtcccgcagt 426 |||||||||||||||||||||| Sbjct: 1854 catggtggagttgtcccgcagt 1833
>gb|AY026237.1| Macaca mulatta alpha-1,3-galactosyltransferase pseudogene, mRNA sequence Length = 3082 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 14 cccgcggcgcctccccctccctccag 39 ||||||||||||||| |||||||||| Sbjct: 264 cccgcggcgcctccctctccctccag 239
>gb|AY026234.1|Y026225S03 Macaca mulatta alpha-1,3-galactosyltransferase pseudogene, exon 1b Length = 181 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 14 cccgcggcgcctccccctccctccag 39 ||||||||||||||| |||||||||| Sbjct: 158 cccgcggcgcctccctctccctccag 133
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 320 agtcccccgacggcgacgtcac 341 |||||||||||||||||||||| Sbjct: 2392973 agtcccccgacggcgacgtcac 2392994
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome Length = 1584804 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 292 ggccccaagggcatggataagatgct 317 ||||| |||||||||||||||||||| Sbjct: 1180463 ggcccgaagggcatggataagatgct 1180488
>gb|AE005099.1| Halobacterium sp. NRC-1 section 130 of 170 of the complete genome Length = 11919 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 289 ctcggccccaagggcatggataagatgctc 318 |||||||| ||||||||||| ||||||||| Sbjct: 6298 ctcggcccgaagggcatggacaagatgctc 6269
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 289 ctcggccccaagggcatggataagatgctc 318 |||||||| ||||||||||| ||||||||| Sbjct: 289669 ctcggcccgaagggcatggacaagatgctc 289698
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 gcgcagaaggccaacatcgcc 252 ||||||||||||||||||||| Sbjct: 502371 gcgcagaaggccaacatcgcc 502351
>ref|XM_415711.1| PREDICTED: Gallus gallus similar to huntingtin interacting protein 1 (LOC417463), mRNA Length = 7071 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 cgcccccgcggcgcctccccc 30 ||||||||||||||||||||| Sbjct: 4427 cgcccccgcggcgcctccccc 4407
>ref|XM_954433.1| Neurospora crassa OR74A hypothetical protein (NCU02207.1) partial mRNA Length = 1620 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 295 cccaagggcatggataagatgctccagtc 323 |||||||||||||| ||||| |||||||| Sbjct: 154 cccaagggcatggacaagatcctccagtc 182
>ref|XM_330982.1| Neurospora crassa OR74A hypothetical protein (NCU02207.1) partial mRNA Length = 1620 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 295 cccaagggcatggataagatgctccagtc 323 |||||||||||||| ||||| |||||||| Sbjct: 154 cccaagggcatggacaagatcctccagtc 182
>gb|AC116130.15| Mus musculus chromosome 17, clone RP23-98F21, complete sequence Length = 228842 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 cacagcaacacccctcctcct 89 ||||||||||||||||||||| Sbjct: 106673 cacagcaacacccctcctcct 106693
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 ccgcacctccctcggccccaa 299 ||||||||||||||||||||| Sbjct: 33289092 ccgcacctccctcggccccaa 33289112
>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete sequence Length = 122815 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 ccgcacctccctcggccccaa 299 ||||||||||||||||||||| Sbjct: 45608 ccgcacctccctcggccccaa 45628
>ref|XM_753625.1| Ustilago maydis 521 hypothetical protein (UM02571.1) partial mRNA Length = 1725 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 289 ctcggccccaagggcatggataagatgctccag 321 ||||| |||||||||||||| |||||| ||||| Sbjct: 145 ctcggacccaagggcatggacaagatgatccag 177
>ref|XM_760675.1| Theileria parva strain Muguga chromosome 1 chaperonin 60 kDa (TP01_0241) partial mRNA Length = 1596 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 292 ggccccaagggcatggataagatgctcca 320 ||||| |||||||||||||||||| |||| Sbjct: 130 ggccctaagggcatggataagatgatcca 158
>ref|XM_949391.1| Theileria annulata strain Ankara chaperonin containing tcp-1 subunit delta (TA19585) partial mRNA Length = 1596 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 292 ggccccaagggcatggataagatgctcca 320 ||||||||||| |||||||||||| |||| Sbjct: 130 ggccccaaggggatggataagatgatcca 158
>emb|X72888.1|RCRNFG R.capsulatus genes rnfA - rnfF, fdxC, fdxN, Orf14 and Orf 10 Length = 12480 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 213 gcggctgcaggggctcgatgcgcag 237 ||||||||||||| ||||||||||| Sbjct: 1811 gcggctgcaggggatcgatgcgcag 1787
>emb|AL078630.1|MM573K1 Mouse DNA sequence from clone CT7-BM573K1 on chromosome 17 Contains the gene for gamma-aminobutyric acid (GABA) B receptor 1, five genes for novel 7 transmembrane receptor (rhodopsin family) (olfactory receptor LIKE) proteins, the gene for a novel Ulp1 protease family member, a Ulp1 protease family pseudogene, a novel pseudogene, a Von Hippel-Lindau disease tumor suppressor (VHL) pseudogene, a 7 transmembrane receptor (rhodopsin family) (olfactory receptor LIKE) pseudogene, the gene for diubiquitin and three CpG islands, complete sequence Length = 154614 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 cacagcaacacccctcctcct 89 ||||||||||||||||||||| Sbjct: 3315 cacagcaacacccctcctcct 3295
>gb|BC065359.1| Danio rerio heat shock protein 90kDa alpha (cytosolic), class B member 1, mRNA (cDNA clone MGC:77433 IMAGE:6970738), complete cds Length = 2669 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 catggtggagttgtcccgcag 425 ||||||||||||||||||||| Sbjct: 1921 catggtggagttgtcccgcag 1901
>ref|NM_131310.1| Danio rerio heat shock protein 90kDa alpha (cytosolic), class B member 1 (hsp90ab1), mRNA Length = 2642 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 catggtggagttgtcccgcag 425 ||||||||||||||||||||| Sbjct: 1895 catggtggagttgtcccgcag 1875
>gb|AE009858.1|AE009858 Pyrobaculum aerophilum strain IM2 section 113 of 201 of the complete genome Length = 14169 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 cccaagggcatggataagatg 315 ||||||||||||||||||||| Sbjct: 1207 cccaagggcatggataagatg 1227
>ref|XM_685560.1| PREDICTED: Danio rerio similar to heat shock protein hsp90beta (LOC573174), partial mRNA Length = 603 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 catggtggagttgtcccgcag 425 ||||||||||||||||||||| Sbjct: 389 catggtggagttgtcccgcag 369
>gb|BC109781.1| Bos taurus cDNA clone MGC:133746 IMAGE:8068669, complete cds Length = 1893 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 340 accatcaccaatgatggggcaaccatcctggagctaatgga 380 ||||| || |||||||| |||||||||||| ||||| |||| Sbjct: 267 accattactaatgatggtgcaaccatcctgaagctactgga 307
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 279 ccgcacctccctcggccccaagggc 303 ||||||| ||||||||||||||||| Sbjct: 23366305 ccgcacccccctcggccccaagggc 23366329
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 ccgcacctccctcggccccaa 299 ||||||||||||||||||||| Sbjct: 33379602 ccgcacctccctcggccccaa 33379622
>gb|AF532114.1| Mus musculus strain 129/SvJ BAC clone citb544e14 from the MHC region, complete sequence Length = 153869 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 cacagcaacacccctcctcct 89 ||||||||||||||||||||| Sbjct: 121361 cacagcaacacccctcctcct 121341
>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0451G12 Length = 142182 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 279 ccgcacctccctcggccccaagggc 303 ||||||| ||||||||||||||||| Sbjct: 48142 ccgcacccccctcggccccaagggc 48166
>dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0009J19 Length = 156988 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 ccggcggccatggcgctcgcc 159 ||||||||||||||||||||| Sbjct: 102073 ccggcggccatggcgctcgcc 102093
>dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1616_B03 Length = 96081 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 ccggcggccatggcgctcgcc 159 ||||||||||||||||||||| Sbjct: 6887 ccggcggccatggcgctcgcc 6907
>ref|NM_001038086.1| Bos taurus similar to T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha) (MGC133746), mRNA Length = 1893 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 340 accatcaccaatgatggggcaaccatcctggagctaatgga 380 ||||| || |||||||| |||||||||||| ||||| |||| Sbjct: 267 accattactaatgatggtgcaaccatcctgaagctactgga 307
>gb|AF068772.1|AF068772 Danio rerio heat shock protein hsp90beta mRNA, complete cds Length = 2672 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 catggtggagttgtcccgcag 425 ||||||||||||||||||||| Sbjct: 1914 catggtggagttgtcccgcag 1894
>gb|AF042108.1|AF042108 Danio rerio heat shock protein 90-beta (hsp90beta) mRNA, complete cds Length = 2642 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 catggtggagttgtcccgcag 425 ||||||||||||||||||||| Sbjct: 1895 catggtggagttgtcccgcag 1875
>ref|XM_465344.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2082 Score = 40.1 bits (20), Expect = 6.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 280 cgcacctccctcggccccaagggcatggataagatg 315 |||||||||||||||||| |||||||| |||||| Sbjct: 214 cgcacctccctcggcccccgtggcatggacaagatg 249
>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome Length = 2401520 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 cttccagagcctcctggtag 122 |||||||||||||||||||| Sbjct: 512625 cttccagagcctcctggtag 512606
>gb|AC102856.5| Mus musculus chromosome 8, clone RP24-500H8, complete sequence Length = 195286 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 tcaccatcaccaatgatggg 357 |||||||||||||||||||| Sbjct: 7994 tcaccatcaccaatgatggg 8013
>gb|BC039061.1| Homo sapiens hypothetical protein LOC284352, mRNA (cDNA clone IMAGE:4779950), with apparent retained intron Length = 1746 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ccctccccccacagcaacac 79 |||||||||||||||||||| Sbjct: 1127 ccctccccccacagcaacac 1146
>ref|XM_549276.2| PREDICTED: Canis familiaris similar to mammalian retrotransposon derived 8b (LOC492155), mRNA Length = 1521 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 ccccgcggcgcctccccctccctc 36 |||||| ||||||||||||||||| Sbjct: 700 ccccgccgcgcctccccctccctc 723
>gb|AC130541.4| Mus musculus BAC clone RP24-124P9 from chromosome 3, complete sequence Length = 191814 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cagcaacacccctcctcctc 90 |||||||||||||||||||| Sbjct: 39024 cagcaacacccctcctcctc 39005
>ref|XM_799647.1| Trypanosoma cruzi strain CL Brener t-complex protein 1, delta subunit (Tc00.1047053504181.50) partial mRNA Length = 615 Score = 40.1 bits (20), Expect = 6.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 280 cgcacctccctcggccccaagggcatggataagatg 315 ||||||||||||||||| ||||||||||||||| Sbjct: 106 cgcacctccctcggcccacgtggcatggataagatg 141
>emb|Z35599.1|CEF25F2 Caenorhabditis elegans Cosmid F25F2, complete sequence Length = 29551 Score = 40.1 bits (20), Expect = 6.0 Identities = 47/56 (83%) Strand = Plus / Minus Query: 328 gacggcgacgtcaccatcaccaatgatggggcaaccatcctggagctaatggatgt 383 |||||||| |||||||||||||| || || || || ||| ||||| ||||||||| Sbjct: 5830 gacggcgatgtcaccatcaccaacgacggagccactatcatggagaaaatggatgt 5775
>ref|XM_812674.1| Trypanosoma cruzi strain CL Brener t-complex protein 1, delta subunit (Tc00.1047053509695.200) partial mRNA Length = 1614 Score = 40.1 bits (20), Expect = 6.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 280 cgcacctccctcggccccaagggcatggataagatg 315 ||||||||||||||||| ||||||||||||||| Sbjct: 106 cgcacctccctcggcccacgtggcatggataagatg 141
>emb|AL365190.16| Human DNA sequence from clone RP11-512H14 on chromosome 9 Contains the 5' end of the TLE1 gene for transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) (ESG, GRG1), the 5' end of a novel gene and two CpG isalnds, complete sequence Length = 89468 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 tcaccatcaccaatgatggg 357 |||||||||||||||||||| Sbjct: 60518 tcaccatcaccaatgatggg 60537
>emb|AJ851476.1| Gallus gallus mRNA for hypothetical protein, clone 3m3 Length = 1985 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 346 accaatgatggggcaaccatcctg 369 ||||||||||| |||||||||||| Sbjct: 265 accaatgatggtgcaaccatcctg 288
>emb|AJ583803.1| Glycine max cctd gene for cytosolic chaperonin delta-subunit, cultivar Cuc Vang Length = 1602 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 292 ggccccaagggcatggataagatg 315 ||||||||||||||||| |||||| Sbjct: 136 ggccccaagggcatggacaagatg 159
>gb|AF494043.1| Physarum polycephalum chaperonin containing TCP-1 delta subunit (CCT4) mRNA, complete cds Length = 1702 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ggccccaagggcatggataa 311 |||||||||||||||||||| Sbjct: 187 ggccccaagggcatggataa 206
>gb|AF403133.1|AF403132S2 Mus musculus G protein-gated K+ channel subunit 1 GIRK1 (Kcnj1) gene, exon 5 and partial cds Length = 7248 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 ccgcctcagtccctccccccacag 73 |||||||||||||||| ||||||| Sbjct: 970 ccgcctcagtccctcctcccacag 993
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 gtcaccatcaccaatgatgg 356 |||||||||||||||||||| Sbjct: 1091047 gtcaccatcaccaatgatgg 1091028
>ref|NM_001012533.1| Gallus gallus chaperonin containing TCP1, subunit 2 (beta) (CCT2), mRNA Length = 1985 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 346 accaatgatggggcaaccatcctg 369 ||||||||||| |||||||||||| Sbjct: 265 accaatgatggtgcaaccatcctg 288
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 292 ggccccaagggcatggataagatg 315 ||||||||||||||||| |||||| Sbjct: 855352 ggccccaagggcatggacaagatg 855375
>dbj|AK080781.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130045J22 product:unclassifiable, full insert sequence Length = 2077 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 tcaccatcaccaatgatggg 357 |||||||||||||||||||| Sbjct: 200 tcaccatcaccaatgatggg 219
>gb|AF319998.1|AF319998 Stigmatella aurantiaca myxalamid biosynthetic gene cluster, complete sequence Length = 49736 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 cgcgcgatccgcccttccag 109 |||||||||||||||||||| Sbjct: 27567 cgcgcgatccgcccttccag 27586
>ref|NM_171104.2| Caenorhabditis elegans Chaperonin Containing TCP-1 family member (cct-5) (cct-5) mRNA, complete cds Length = 1659 Score = 40.1 bits (20), Expect = 6.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 328 gacggcgacgtcaccatcaccaatgatggggcaaccatcctggagctaatggatgt 383 |||||||| |||||||||||||| || || || || ||| ||||| ||||||||| Sbjct: 226 gacggcgatgtcaccatcaccaacgacggagccactatcatggagaaaatggatgt 281
>ref|NM_065514.4| Caenorhabditis elegans Chaperonin Containing TCP-1 family member (cct-5) (cct-5) mRNA, complete cds Length = 1930 Score = 40.1 bits (20), Expect = 6.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 328 gacggcgacgtcaccatcaccaatgatggggcaaccatcctggagctaatggatgt 383 |||||||| |||||||||||||| || || || || ||| ||||| ||||||||| Sbjct: 228 gacggcgatgtcaccatcaccaacgacggagccactatcatggagaaaatggatgt 283
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 280 cgcacctccctcggccccaagggcatggataagatg 315 |||||||||||||||||| |||||||| |||||| Sbjct: 13564823 cgcacctccctcggcccccgtggcatggacaagatg 13564788
>dbj|AP005865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0037J12 Length = 118553 Score = 40.1 bits (20), Expect = 6.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 280 cgcacctccctcggccccaagggcatggataagatg 315 |||||||||||||||||| |||||||| |||||| Sbjct: 80128 cgcacctccctcggcccccgtggcatggacaagatg 80093
>dbj|AK109416.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-E06, full insert sequence Length = 1619 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 gcagaaggccaacatcgccg 253 |||||||||||||||||||| Sbjct: 218 gcagaaggccaacatcgccg 237
>gb|AC153505.6| Mus musculus 10 BAC RP23-336I13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190636 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 cccccacagcaacacccctcctcc 88 ||||||||||||||||| |||||| Sbjct: 93999 cccccacagcaacacccttcctcc 93976
>ref|XM_316223.2| Anopheles gambiae str. PEST ENSANGP00000017802 (ENSANGG00000015313), partial mRNA Length = 6522 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 tccgggagcaggagaagaag 210 |||||||||||||||||||| Sbjct: 1646 tccgggagcaggagaagaag 1665
>ref|NM_209532.1| Eremothecium gossypii ADR083Wp (ADR083W), mRNA Length = 1590 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 292 ggccccaagggcatggataagatg 315 ||||||||||||||||| |||||| Sbjct: 121 ggccccaagggcatggacaagatg 144
>dbj|AK067672.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119K24, full insert sequence Length = 2081 Score = 40.1 bits (20), Expect = 6.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 280 cgcacctccctcggccccaagggcatggataagatg 315 |||||||||||||||||| |||||||| |||||| Sbjct: 213 cgcacctccctcggcccccgtggcatggacaagatg 248
>emb|Z22737.1|AELACDEH A.eutrophus genes for lactate dehydrogenase, putative membrane-bound protein with four times repitition of Pro-Ser-Ala at the N-terminus (function unknown) and transglycosidase (partial) Length = 4245 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 236 agaaggccaacatcgccgccggca 259 ||||| |||||||||||||||||| Sbjct: 1575 agaagtccaacatcgccgccggca 1598
>gb|AC140839.9| Mus musculus chromosome 3, clone RP24-316D12, complete sequence Length = 168722 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cagcaacacccctcctcctc 90 |||||||||||||||||||| Sbjct: 55604 cagcaacacccctcctcctc 55623
>gb|AC005757.1|AC005757 Homo sapiens chromosome 19, cosmid R32611, complete sequence Length = 45929 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ccctccccccacagcaacac 79 |||||||||||||||||||| Sbjct: 11306 ccctccccccacagcaacac 11325
>emb|AL929253.5| Mouse DNA sequence from clone RP23-350F14 on chromosome 2, complete sequence Length = 133910 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 ccgcctcagtccctccccccacag 73 |||||||||||||||| ||||||| Sbjct: 71713 ccgcctcagtccctcctcccacag 71736
>gb|U25698.1|CEU25698 Caenorhabditis elegans CCT chaperonin subunit 5 (cct-5) mRNA, complete cds Length = 1629 Score = 40.1 bits (20), Expect = 6.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 328 gacggcgacgtcaccatcaccaatgatggggcaaccatcctggagctaatggatgt 383 |||||||| |||||||||||||| || || || || ||| ||||| ||||||||| Sbjct: 196 gacggcgatgtcaccatcaccaacgacggagccactatcatggagaaaatggatgt 251
>dbj|AB075866.1| Homo sapiens mRNA for KIAA1986 protein Length = 5949 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ccctccccccacagcaacac 79 |||||||||||||||||||| Sbjct: 4558 ccctccccccacagcaacac 4577 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,700,670 Number of Sequences: 3902068 Number of extensions: 3700670 Number of successful extensions: 89329 Number of sequences better than 10.0: 114 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 88171 Number of HSP's gapped (non-prelim): 1157 length of query: 448 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 426 effective length of database: 17,147,199,772 effective search space: 7304707102872 effective search space used: 7304707102872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)