ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart60b12 |
|---|---|
| Clone Library Name | barley_pub |
>LEA14_SOYBN (P46519) Desiccation protectant protein Lea14 homolog| Length = 152 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = +3 Query: 234 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 413 +DK K+++ E+ KP A V + + + + V + NP PIP+ Sbjct: 5 LDKAKNYV------AEKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVSNPYSTPIPIC 58 Query: 414 DIDYLIDSDGRKLVAG 461 +I Y + S G+++ +G Sbjct: 59 EIKYSLKSAGKEIASG 74
>DRPD_CRAPL (P22241) Desiccation-related protein PCC27-45| Length = 151 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/76 (27%), Positives = 38/76 (50%) Frame = +3 Query: 234 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 413 ++K K+F+ E+ KP A V + + +G H + + ++NP IP+ Sbjct: 5 MNKAKNFV------AEKVANVEKPKASVEDVDLKDVGRHGITYLTRICVENPYSASIPVG 58 Query: 414 DIDYLIDSDGRKLVAG 461 +I Y + S GR +V+G Sbjct: 59 EIKYTLKSAGRVIVSG 74
>LEA14_GOSHI (P46518) Late embryogenesis abundant protein Lea14-A| Length = 151 Score = 39.7 bits (91), Expect = 0.004 Identities = 20/76 (26%), Positives = 36/76 (47%) Frame = +3 Query: 234 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 413 ++K KDF+ +++ KP A V+ + + H+ + V + NP IP+ Sbjct: 5 LEKAKDFV------VDKVANIKKPEASVSDVDLKHVSRECVEYGAKVSVSNPYSHSIPIC 58 Query: 414 DIDYLIDSDGRKLVAG 461 +I Y S GR + +G Sbjct: 59 EISYNFRSAGRGIASG 74
>UC29_MAIZE (P80635) Unknown protein from 2D-PAGE of etiolated coleoptile (Spot| 45) (Fragment) Length = 15 Score = 36.6 bits (83), Expect = 0.032 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = +3 Query: 384 NPNPVPIPLVDIDYL 428 NPNPVPIPLVDIDYL Sbjct: 1 NPNPVPIPLVDIDYL 15
>LEA14_ARATH (O03983) Putative dessication-related protein LEA14| Length = 151 Score = 35.4 bits (80), Expect = 0.072 Identities = 19/76 (25%), Positives = 33/76 (43%) Frame = +3 Query: 234 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 413 +DK KDF+ D + KP V + + + + + V + NP IP+ Sbjct: 5 LDKAKDFVAD------KLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPIC 58 Query: 414 DIDYLIDSDGRKLVAG 461 +I + S GR++ G Sbjct: 59 EISFTFHSAGREIGKG 74
>DEF_SYNEL (Q8DIB4) Peptide deformylase (EC 3.5.1.88) (PDF) (Polypeptide| deformylase) Length = 188 Score = 32.7 bits (73), Expect = 0.46 Identities = 17/61 (27%), Positives = 33/61 (54%) Frame = +3 Query: 234 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 413 + KV D I DI K+ + + SAD + P +G+++ LV+D+ +P P+ ++ Sbjct: 34 VSKVDDSIRDIARKMLQTMY----SADGIGLAAPQVGINKQILVIDIHPDDPEAEPLVMI 89 Query: 414 D 416 + Sbjct: 90 N 90
>Y3593_NOCFA (Q5YTQ0) UPF0042 protein nfa35930| Length = 316 Score = 30.8 bits (68), Expect = 1.8 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Frame = +3 Query: 234 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLH-----RADLVVDV-LIKNPNP 395 ID + IH + K+EEA G G P+A ++ V G AD+V+DV + NP+ Sbjct: 163 IDTTELSIHQLHRKLEEAYGGGAPAA--LQLTVQSFGFKYGVPLDADMVLDVRFLPNPHW 220 Query: 396 VP 401 +P Sbjct: 221 IP 222
>MTE2_ECOLI (P05101) Modification methylase EcoRII (EC 2.1.1.37)| (Cytosine-specific methyltransferase EcoRII) (M.EcoRII) Length = 477 Score = 29.6 bits (65), Expect = 3.9 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +2 Query: 17 SRISTFHLRRPGSEASKLRGWQPASGHVFLGGQPQRSHRPRPL 145 +R + + GSE RGW A+G + ++HRPR L Sbjct: 369 ARTLSARYHKDGSEILIDRGWDMATGETDFANEENQAHRPRRL 411
>LRBA_HUMAN (P50851) Lipopolysaccharide-responsive and beige-like anchor protein| (CDC4-like protein) (Beige-like protein) Length = 2863 Score = 29.6 bits (65), Expect = 3.9 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +3 Query: 15 IPASPLSISAGRDLKQASSGGGSQPAAMSSSADNPNEVT 131 IP + +S+ + D QAS GG P + SS+A P+ T Sbjct: 1744 IPTNAVSVVSSVDSAQASDMGGESPGSRSSNAKLPSVPT 1782
>ATG4_PODAN (Q86ZL5) Probable cysteine protease ATG4 (EC 3.4.22.-)| (Autophagy-related protein 4) Length = 500 Score = 28.9 bits (63), Expect = 6.7 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Frame = +2 Query: 5 ISFDSRISTFHLRRPGSEASKLRGWQPASGHVFLGGQPQ-----RSHRPRPLL 148 I ++ IST L +A + G +P+S H F+G Q Q H PRP L Sbjct: 353 IYHEALISTLQL----PQAIGIAGGRPSSSHYFIGAQGQWLFYLDPHHPRPAL 401
>ALKJ_PSEPU (Q9WWW2) Alcohol dehydrogenase [acceptor] (EC 1.1.99.-)| Length = 552 Score = 28.5 bits (62), Expect = 8.7 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 5/75 (6%) Frame = +3 Query: 252 FIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVD----VLIKNPNPVPIPLVDI 419 ++ D G KI AVG+G LH DL+ + +K+ NP+ PL+D Sbjct: 364 YLKDHGRKI--AVGYGYT-------------LHICDLLPKSRGRIGLKSANPMDDPLIDP 408 Query: 420 DYLID-SDGRKLVAG 461 +YL D D + ++AG Sbjct: 409 NYLSDPEDIKTMIAG 423
>ATG4_NEUCR (Q7S3X7) Probable cysteine protease atg-4 (EC 3.4.22.-)| (Autophagy-related protein 4) Length = 506 Score = 28.5 bits (62), Expect = 8.7 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%) Frame = +2 Query: 14 DSRISTFHLRRPGSEASKLRGWQPASGHVFLGGQPQR-----SHRPRPLL 148 ++ IST L ++ + G +P+S H F+G Q QR H PRP L Sbjct: 362 EALISTLQL----PQSIGIAGGRPSSSHYFVGVQGQRLFYLDPHHPRPAL 407 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,738,257 Number of Sequences: 219361 Number of extensions: 604340 Number of successful extensions: 2806 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2750 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2803 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
