>WBP4_CHICK (Q5F457) WW domain-binding protein 4 (WBP-4)|
          Length = 398

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 29/81 (35%), Positives = 42/81 (51%)
 Frame = +3

Query: 141 MTEYWVSQGNKWCDLCKIFISNNPFSIRTHELGKRHKDNVTQRLSTMQKDGXXXXXXXXX 320
           M +YW SQ  K+CD CK +I++N  SI  HE GK HK+NV +R+S ++K           
Sbjct: 1   MADYWKSQPKKFCDYCKCWIADNRPSIDFHERGKNHKENVAKRISEIRKKSMEKAKEEEN 60

Query: 321 XXXXXXXXXXXXXXSYQKDLE 383
                         +YQ+DL+
Sbjct: 61  MSKEFAAMEEAAMKAYQEDLK 81

>WBP4_MOUSE (Q61048) WW domain-binding protein 4 (WBP-4) (Formin-binding|
           protein 21)
          Length = 376

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 27/81 (33%), Positives = 42/81 (51%)
 Frame = +3

Query: 141 MTEYWVSQGNKWCDLCKIFISNNPFSIRTHELGKRHKDNVTQRLSTMQKDGXXXXXXXXX 320
           M +YW SQ  K+CD CK +I++N  S+  HE GK HK+NV +R+S +++           
Sbjct: 1   MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVARRISEIKQKSLDKAKEEEK 60

Query: 321 XXXXXXXXXXXXXXSYQKDLE 383
                         +YQ+DL+
Sbjct: 61  ASKEFAAMEAAALKAYQEDLK 81

>WBP4_HUMAN (O75554) WW domain-binding protein 4 (WBP-4) (Formin-binding|
           protein 21)
          Length = 376

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 27/81 (33%), Positives = 42/81 (51%)
 Frame = +3

Query: 141 MTEYWVSQGNKWCDLCKIFISNNPFSIRTHELGKRHKDNVTQRLSTMQKDGXXXXXXXXX 320
           M +YW SQ  K+CD CK +I++N  S+  HE GK HK+NV +R+S +++           
Sbjct: 1   MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVAKRISEIKQKSLDKAKEEEK 60

Query: 321 XXXXXXXXXXXXXXSYQKDLE 383
                         +YQ+DL+
Sbjct: 61  ASKEFAAMEAAALKAYQEDLK 81

>WBP4_RAT (Q5HZF2) WW domain-binding protein 4 (WBP-4)|
          Length = 374

 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 26/81 (32%), Positives = 42/81 (51%)
 Frame = +3

Query: 141 MTEYWVSQGNKWCDLCKIFISNNPFSIRTHELGKRHKDNVTQRLSTMQKDGXXXXXXXXX 320
           M +YW SQ  K+CD CK +I++N  S+  HE GK HK+NV +++S +++           
Sbjct: 1   MADYWKSQPKKFCDYCKCWIADNRPSVEFHERGKNHKENVARKISEIKQKSLDKAKEEEK 60

Query: 321 XXXXXXXXXXXXXXSYQKDLE 383
                         +YQ+DL+
Sbjct: 61  ASKEFAAMEAAALKAYQEDLK 81

>RU1C_XENLA (Q03369) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)|
           (U1C protein) (U1-C)
          Length = 159

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +3

Query: 174 WCDLCKIFISNNPFSIR-THELGKRHKDNV 260
           +CD C  +++++  S+R TH  G++HK+NV
Sbjct: 5   YCDYCDTYLTHDSPSVRKTHCSGRKHKENV 34

>RU1C_MOUSE (Q62241) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)|
           (U1C protein) (U1-C)
          Length = 159

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +3

Query: 174 WCDLCKIFISNNPFSIR-THELGKRHKDNV 260
           +CD C  +++++  S+R TH  G++HK+NV
Sbjct: 5   YCDYCDTYLTHDSPSVRKTHCSGRKHKENV 34

>RU1C_HUMAN (P09234) U1 small nuclear ribonucleoprotein C (U1 snRNP protein C)|
           (U1C protein) (U1-C)
          Length = 159

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +3

Query: 174 WCDLCKIFISNNPFSIR-THELGKRHKDNV 260
           +CD C  +++++  S+R TH  G++HK+NV
Sbjct: 5   YCDYCDTYLTHDSPSVRKTHCSGRKHKENV 34

>SEM4A_HUMAN (Q9H3S1) Semaphorin-4A precursor (Semaphorin B) (Sema B)|
          Length = 761

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 183 SRTICFLGSPNTQSWRAEAPRG 118
           SRT C L +PN  SW+ +  RG
Sbjct: 520 SRTCCLLSAPNLNSWKQDMERG 541

>FBXW4_HUMAN (P57775) F-box/WD-repeat protein 4 (F-box and WD-40 domain protein|
           4) (Dactylin)
          Length = 412

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 253 SLWRLPSSCVLMLNGLLDIKILHKSHHLFPWLTQYS 146
           +LWRLP   +L++   LD++ L +   +  WL +++
Sbjct: 27  ALWRLPEELLLLICSYLDMRALGRLAQVCRWLRRFT 62

>FBXW4_MOUSE (Q9JMJ2) F-box/WD-repeat protein 4 (F-box and WD-40 domain protein|
           4) (Hagoromo protein)
          Length = 410

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 253 SLWRLPSSCVLMLNGLLDIKILHKSHHLFPWLTQYS 146
           +LWRLP   +L++   LD + L +   +  WL +++
Sbjct: 25  ALWRLPEELLLLICSYLDTRALGRLAQVCRWLRRFT 60

>BCHD_CHLTE (Q93SW0) Magnesium-chelatase 67 kDa subunit (EC 6.6.1.1)|
           (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit
           D)
          Length = 620

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 52  EIKPQLVGSGDPPPQEAKPHDASARSLRPP 141
           E  P+ +   +PPPQE +P D +     PP
Sbjct: 279 EPNPEEMAQDEPPPQEEQPQDEAEDQNAPP 308


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,056,483
Number of Sequences: 219361
Number of extensions: 865284
Number of successful extensions: 2342
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2338
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)