ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart60a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC118284.3| Oryza sativa (japonica cultivar-group) chromosome... 64 4e-07
2gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome... 64 4e-07
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
4dbj|AK100082.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 4e-07
5ref|NM_191155.1| Oryza sativa (japonica cultivar-group), predic... 50 0.006
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
7dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
8dbj|AK120741.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
9dbj|AK119360.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
10dbj|AK109885.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
11gb|AE005884.1| Caulobacter crescentus CB15 section 210 of 359 of... 46 0.094
12ref|XM_473909.1| Oryza sativa (japonica cultivar-group), predic... 44 0.37
13emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4,... 44 0.37
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
15dbj|AK120799.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.37
16emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.37
17ref|XM_483028.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
18ref|XM_544782.2| PREDICTED: Canis familiaris similar to SH3 and ... 42 1.5
19gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete... 42 1.5
20emb|CR859024.1| Pongo pygmaeus mRNA; cDNA DKFZp469A1713 (from cl... 42 1.5
21dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
22dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
23emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 42 1.5
24emb|CR759894.19| Zebrafish DNA sequence from clone DKEYP-84G6 in... 42 1.5
25dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.5
26gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 5.8
27gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 5.8
28ref|XM_482999.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
29ref|XM_477741.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
30gb|AY020385.1| Oryza sativa microsatellite MRG2710 containing (G... 40 5.8
31gb|AY657614.1| Synthetic construct Peudomonas aeruginosa clone F... 40 5.8
32gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 5.8
33emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.8
34emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 40 5.8
35emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete ... 40 5.8
36gb|AF232941.1| Bordetella bronchiseptica strain SB283 flagellin ... 40 5.8
37gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 5.8
38gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.8
39dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
40gb|AE004450.1| Pseudomonas aeruginosa PAO1, section 11 of 529 of... 40 5.8
41dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
42dbj|AP004213.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
43dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.8
44dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
45dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
46dbj|AK119491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
47dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
48gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 40 5.8
49emb|X86780.1|SHGCPIR S.hygroscopicus gene cluster for polyketide... 40 5.8
50gb|L13034.1|BPEFLAGEL Bordetella bronchiseptica flagellin (flaA)... 40 5.8 
>gb|AC118284.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1087_C03,
             complete sequence
          Length = 101218

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                 
Query: 326   ccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggct 377
             |||||||||||||| | ||  ||||| |||||||||||||||||||||||||
Sbjct: 96470 ccctccccaacgtcgcggtcgccggcgccgtccccgacgccatcggcgggct 96419



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                         
Query: 183   cgacgagcggcagctcctgctcaggatcaagagcgcgtggggcgacccggcggggctcgc 242
             |||||||  |||||||||||||  | ||||| |||||||||| ||||| |||| ||||||
Sbjct: 96613 cgacgagaagcagctcctgctccaggtcaagcgcgcgtggggggaccccgcggcgctcgc 96554

                    
Query: 243   gtcgtgg 249
             |||||||
Sbjct: 96553 gtcgtgg 96547
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>gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0075A10, complete sequence
          Length = 171101

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                 
Query: 326   ccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggct 377
             |||||||||||||| | ||  ||||| |||||||||||||||||||||||||
Sbjct: 59118 ccctccccaacgtcgcggtcgccggcgccgtccccgacgccatcggcgggct 59067



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                         
Query: 183   cgacgagcggcagctcctgctcaggatcaagagcgcgtggggcgacccggcggggctcgc 242
             |||||||  |||||||||||||  | ||||| |||||||||| ||||| |||| ||||||
Sbjct: 59261 cgacgagaagcagctcctgctccaggtcaagcgcgcgtggggggaccccgcggcgctcgc 59202

                    
Query: 243   gtcgtgg 249
             |||||||
Sbjct: 59201 gtcgtgg 59195
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                    
Query: 326      ccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggct 377
                |||||||||||||| | ||  ||||| |||||||||||||||||||||||||
Sbjct: 25825176 ccctccccaacgtcgcggtcgccggcgccgtccccgacgccatcggcgggct 25825125



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                            
Query: 183      cgacgagcggcagctcctgctcaggatcaagagcgcgtggggcgacccggcggggctcgc 242
                |||||||  |||||||||||||  | ||||| |||||||||| ||||| |||| ||||||
Sbjct: 25825319 cgacgagaagcagctcctgctccaggtcaagcgcgcgtggggggaccccgcggcgctcgc 25825260

                       
Query: 243      gtcgtgg 249
                |||||||
Sbjct: 25825259 gtcgtgg 25825253
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>dbj|AK100082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002E24, full
           insert sequence
          Length = 3293

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 326 ccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggct 377
           |||||||||||||| | ||  ||||| |||||||||||||||||||||||||
Sbjct: 323 ccctccccaacgtcgcggtcgccggcgccgtccccgacgccatcggcgggct 374



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 183 cgacgagcggcagctcctgctcaggatcaagagcgcgtggggcgacccggcggggctcgc 242
           |||||||  |||||||||||||  | ||||| |||||||||| ||||| |||| ||||||
Sbjct: 180 cgacgagaagcagctcctgctccaggtcaagcgcgcgtggggggaccccgcggcgctcgc 239

                  
Query: 243 gtcgtgg 249
           |||||||
Sbjct: 240 gtcgtgg 246
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>ref|NM_191155.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3192

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 207 gatcaagagcgcgtggggcgacccggcggggctcgcg 243
           ||||||| ||||||||||||||||||| | |||||||
Sbjct: 120 gatcaagcgcgcgtggggcgacccggccgtgctcgcg 156



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 321 cctcgccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggctccc 380
           |||| ||||| |||||  || |||||||||||||||  | |||||| ||||||| ||| |
Sbjct: 237 cctctccctcgccaacaccaacgtgtccggccccgtgtcggacgccgtcggcggcctctc 296

                   
Query: 381 cagcctcg 388
           ||||||||
Sbjct: 297 cagcctcg 304
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 207      gatcaagagcgcgtggggcgacccggcggggctcgcg 243
                ||||||| ||||||||||||||||||| | |||||||
Sbjct: 30999484 gatcaagcgcgcgtggggcgacccggccgtgctcgcg 30999520



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                            
Query: 321      cctcgccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggctccc 380
                |||| ||||| |||||  || |||||||||||||||  | |||||| ||||||| ||| |
Sbjct: 30999601 cctctccctcgccaacaccaacgtgtccggccccgtgtcggacgccgtcggcggcctctc 30999660

                        
Query: 381      cagcctcg 388
                ||||||||
Sbjct: 30999661 cagcctcg 30999668
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>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0439E07
          Length = 176486

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 207   gatcaagagcgcgtggggcgacccggcggggctcgcg 243
             ||||||| ||||||||||||||||||| | |||||||
Sbjct: 56463 gatcaagcgcgcgtggggcgacccggccgtgctcgcg 56499



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 321   cctcgccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggctccc 380
             |||| ||||| |||||  || |||||||||||||||  | |||||| ||||||| ||| |
Sbjct: 56580 cctctccctcgccaacaccaacgtgtccggccccgtgtcggacgccgtcggcggcctctc 56639

                     
Query: 381   cagcctcg 388
             ||||||||
Sbjct: 56640 cagcctcg 56647
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>dbj|AK120741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003P18, full
           insert sequence
          Length = 3613

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 207 gatcaagagcgcgtggggcgacccggcggggctcgcg 243
           ||||||| ||||||||||||||||||| | |||||||
Sbjct: 199 gatcaagcgcgcgtggggcgacccggccgtgctcgcg 235



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 321 cctcgccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggctccc 380
           |||| ||||| |||||  || |||||||||||||||  | |||||| ||||||| ||| |
Sbjct: 316 cctctccctcgccaacaccaacgtgtccggccccgtgtcggacgccgtcggcggcctctc 375

                   
Query: 381 cagcctcg 388
           ||||||||
Sbjct: 376 cagcctcg 383
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>dbj|AK119360.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-G06, full
           insert sequence
          Length = 2885

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 207 gatcaagagcgcgtggggcgacccggcggggctcgcg 243
           ||||||| ||||||||||||||||||| | |||||||
Sbjct: 201 gatcaagcgcgcgtggggcgacccggccgtgctcgcg 237



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 321 cctcgccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggctccc 380
           |||| ||||| |||||  || |||||||||||||||  | |||||| ||||||| ||| |
Sbjct: 318 cctctccctcgccaacaccaacgtgtccggccccgtgtcggacgccgtcggcggcctctc 377

                   
Query: 381 cagcctcg 388
           ||||||||
Sbjct: 378 cagcctcg 385
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>dbj|AK109885.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-D10, full
           insert sequence
          Length = 1500

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 207 gatcaagagcgcgtggggcgacccggcggggctcgcg 243
           ||||||| ||||||||||||||||||| | |||||||
Sbjct: 197 gatcaagcgcgcgtggggcgacccggccgtgctcgcg 233



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 321 cctcgccctccccaacgtcaccgtgtccggccccgtccccgacgccatcggcgggctccc 380
           |||| ||||| |||||  || |||||||||||||||  | |||||| ||||||| ||| |
Sbjct: 314 cctctccctcgccaacaccaacgtgtccggccccgtgtcggacgccgtcggcggcctctc 373

                   
Query: 381 cagcctcg 388
           ||||||||
Sbjct: 374 cagcctcg 381
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>gb|AE005884.1| Caulobacter crescentus CB15 section 210 of 359 of the complete
           genome
          Length = 10029

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 235 gggctcgcgtcgtggtcggcggccacc 261
           ||||||||| |||||||||||||||||
Sbjct: 107 gggctcgcggcgtggtcggcggccacc 133
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>ref|XM_473909.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3525

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 288 cgtctcctgcgacggcgccggccgggtgac 317
           |||| |||||||||||||||||| ||||||
Sbjct: 246 cgtcgcctgcgacggcgccggccaggtgac 275
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>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23,
             complete sequence
          Length = 164805

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 288   cgtctcctgcgacggcgccggccgggtgac 317
             |||| |||||||||||||||||| ||||||
Sbjct: 36420 cgtcgcctgcgacggcgccggccaggtgac 36391
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 288      cgtctcctgcgacggcgccggccgggtgac 317
                |||| |||||||||||||||||| ||||||
Sbjct: 31458737 cgtcgcctgcgacggcgccggccaggtgac 31458708
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>dbj|AK120799.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012H18, full
           insert sequence
          Length = 3973

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 288 cgtctcctgcgacggcgccggccgggtgac 317
           |||| |||||||||||||||||| ||||||
Sbjct: 283 cgtcgcctgcgacggcgccggccaggtgac 312
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>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete
             sequence
          Length = 131195

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 288   cgtctcctgcgacggcgccggccgggtgac 317
             |||| |||||||||||||||||| ||||||
Sbjct: 78573 cgtcgcctgcgacggcgccggccaggtgac 78544
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>ref|XM_483028.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 249 gtcggcggccacctcctcgcactgc 273
           |||||||||||||||||| ||||||
Sbjct: 192 gtcggcggccacctcctcccactgc 168
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>ref|XM_544782.2| PREDICTED: Canis familiaris similar to SH3 and PX domain containing 3
            (LOC487657), mRNA
          Length = 1812

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 146  tctgcctcgtcctgcgccatg 166
            |||||||||||||||||||||
Sbjct: 1544 tctgcctcgtcctgcgccatg 1524
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>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence
          Length = 452156

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 266    cgcactgcgccggctgggccc 286
              |||||||||||||||||||||
Sbjct: 243156 cgcactgcgccggctgggccc 243136
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>emb|CR859024.1| Pongo pygmaeus mRNA; cDNA DKFZp469A1713 (from clone DKFZp469A1713)
          Length = 4361

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 146  tctgcctcgtcctgcgccatg 166
            |||||||||||||||||||||
Sbjct: 2740 tctgcctcgtcctgcgccatg 2720
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 249      gtcggcggccacctcctcgcactgc 273
                |||||||||||||||||| ||||||
Sbjct: 23944717 gtcggcggccacctcctcccactgc 23944693



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 316      acctccctcgccctccccaacgtc 339
                ||||||||||||||||||| ||||
Sbjct: 23811985 acctccctcgccctccccagcgtc 23811962



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 148      tgcctcgtcctgcgccatggcgcg 171
                ||||||||||| ||||||||||||
Sbjct: 19638213 tgcctcgtcctccgccatggcgcg 19638236



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    gtcggcggccacctcctcgc 268
              ||||||||||||||||||||
Sbjct: 370363 gtcggcggccacctcctcgc 370344
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>dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0419H09
          Length = 143533

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 249   gtcggcggccacctcctcgcactgc 273
             |||||||||||||||||| ||||||
Sbjct: 77868 gtcggcggccacctcctcccactgc 77844
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 296     gcgacggcgccggccgggtga 316
               |||||||||||||||||||||
Sbjct: 5724472 gcgacggcgccggccgggtga 5724452
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>emb|CR759894.19| Zebrafish DNA sequence from clone DKEYP-84G6 in linkage group 10,
              complete sequence
          Length = 188280

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 122    acgcctttctcccactcctcg 142
              |||||||||||||||||||||
Sbjct: 173186 acgcctttctcccactcctcg 173166
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 177     gcaggccgacgagcggcagctcctg 201
               |||||||| ||||||||||||||||
Sbjct: 2940140 gcaggccggcgagcggcagctcctg 2940164
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 160     cgccatggcgcggcgcagcaggcc 183
               |||||||||||||||| |||||||
Sbjct: 1657075 cgccatggcgcggcgcggcaggcc 1657098



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    ccatggcgcggcgcagcagg 181
              ||||||||||||||||||||
Sbjct: 681129 ccatggcgcggcgcagcagg 681110
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 162     ccatggcgcggcgcagcagg 181
               ||||||||||||||||||||
Sbjct: 2236615 ccatggcgcggcgcagcagg 2236596
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>ref|XM_482999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1101

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 316 acctccctcgccctccccaacgtc 339
           ||||||||||||||||||| ||||
Sbjct: 529 acctccctcgccctccccagcgtc 506
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>ref|XM_477741.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 624

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 324 cgccctccccaacgtcaccgtgtccggc 351
           ||||||| |||||||||||||| |||||
Sbjct: 252 cgccctcgccaacgtcaccgtgcccggc 279
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>gb|AY020385.1| Oryza sativa microsatellite MRG2710 containing (GA)X15, closest to
           marker R1943, genomic sequence
          Length = 230

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 249 gtcggcggccacctcctcgc 268
           ||||||||||||||||||||
Sbjct: 201 gtcggcggccacctcctcgc 182
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>gb|AY657614.1| Synthetic construct Peudomonas aeruginosa clone FLH041231.01F
           PA0126 gene, partial cds
          Length = 621

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 cgcggcgcagcaggccgacg 187
           ||||||||||||||||||||
Sbjct: 256 cgcggcgcagcaggccgacg 237
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 168     cgcggcgcagcaggccgacg 187
               ||||||||||||||||||||
Sbjct: 2137395 cgcggcgcagcaggccgacg 2137376
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 332    ccaacgtcaccgtgtccggc 351
              ||||||||||||||||||||
Sbjct: 266019 ccaacgtcaccgtgtccggc 266000
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 332    ccaacgtcaccgtgtccggc 351
              ||||||||||||||||||||
Sbjct: 178362 ccaacgtcaccgtgtccggc 178343
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>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29
          Length = 277000

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  cgtcgtggtcggcggccacc 261
            ||||||||||||||||||||
Sbjct: 3635 cgtcgtggtcggcggccacc 3654
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>gb|AF232941.1| Bordetella bronchiseptica strain SB283 flagellin gene, partial cds
          Length = 1051

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 332 ccaacgtcaccgtgtccggc 351
           ||||||||||||||||||||
Sbjct: 818 ccaacgtcaccgtgtccggc 837
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 243    gtcgtggtcggcggccacctcctc 266
              |||||||| |||||||||||||||
Sbjct: 578895 gtcgtggtaggcggccacctcctc 578918
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 176     agcaggccgacgagcggcag 195
               ||||||||||||||||||||
Sbjct: 4768336 agcaggccgacgagcggcag 4768317
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 324      cgccctccccaacgtcaccgtgtccggc 351
                ||||||| |||||||||||||| |||||
Sbjct: 13628209 cgccctcgccaacgtcaccgtgcccggc 13628182
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>gb|AE004450.1| Pseudomonas aeruginosa PAO1, section 11 of 529 of the complete genome
          Length = 11085

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 168  cgcggcgcagcaggccgacg 187
            ||||||||||||||||||||
Sbjct: 8192 cgcggcgcagcaggccgacg 8211
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>dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBb0092C08
          Length = 131049

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 316    acctccctcgccctccccaacgtc 339
              ||||||||||||||||||| ||||
Sbjct: 101185 acctccctcgccctccccagcgtc 101162
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>dbj|AP004213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1111_H02
          Length = 108603

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 316  acctccctcgccctccccaacgtc 339
            ||||||||||||||||||| ||||
Sbjct: 3689 acctccctcgccctccccagcgtc 3666
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 162     ccatggcgcggcgcagcagg 181
               ||||||||||||||||||||
Sbjct: 5393029 ccatggcgcggcgcagcagg 5393048



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     gcggcgcagcaggccgacga 188
               ||||||||||||||||||||
Sbjct: 3409346 gcggcgcagcaggccgacga 3409327
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>dbj|AP005248.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0084P08
          Length = 158656

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 324   cgccctccccaacgtcaccgtgtccggc 351
             ||||||| |||||||||||||| |||||
Sbjct: 95828 cgccctcgccaacgtcaccgtgcccggc 95801
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>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0450B04
          Length = 153268

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   gtcggcggccacctcctcgc 268
             ||||||||||||||||||||
Sbjct: 79877 gtcggcggccacctcctcgc 79858
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>dbj|AK119491.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-D04, full
           insert sequence
          Length = 1360

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 gtcggcggccacctcctcgc 268
           ||||||||||||||||||||
Sbjct: 43  gtcggcggccacctcctcgc 62
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>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0042B03
          Length = 167669

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 148    tgcctcgtcctgcgccatggcgcg 171
              ||||||||||| ||||||||||||
Sbjct: 113773 tgcctcgtcctccgccatggcgcg 113796
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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   ccatggcgcggcgcagcagg 181
             ||||||||||||||||||||
Sbjct: 83308 ccatggcgcggcgcagcagg 83327
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>emb|X86780.1|SHGCPIR S.hygroscopicus gene cluster for polyketide immunosuppressant rapamycin
          Length = 107379

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 359    ccgacgccatcggcgggctc 378
              ||||||||||||||||||||
Sbjct: 105482 ccgacgccatcggcgggctc 105501
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>gb|L13034.1|BPEFLAGEL Bordetella bronchiseptica flagellin (flaA) gene, complete cds
          Length = 1572

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 332  ccaacgtcaccgtgtccggc 351
            ||||||||||||||||||||
Sbjct: 1179 ccaacgtcaccgtgtccggc 1198


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,691,598
Number of Sequences: 3902068
Number of extensions: 2691598
Number of successful extensions: 64582
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63034
Number of HSP's gapped (non-prelim): 1548
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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