ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart59c05 |
|---|---|
| Clone Library Name | barley_pub |
>TO222_ARATH (Q9FNC9) Mitochondrial import receptor subunit TOM22 homolog 2| (Translocase of outer membrane 22 kDa subunit homolog 2) (Mitochondrial import receptor subunit TOM9-2) (Translocase of outer membrane 9 kDa subunit TOM9-2) Length = 98 Score = 83.6 bits (205), Expect = 2e-16 Identities = 47/85 (55%), Positives = 57/85 (67%), Gaps = 8/85 (9%) Frame = +3 Query: 81 GDAGG----VLAAISRSSXXX----XXXXXXXXXXKLLRSTGKAAWIAGTTFLVLVVPLI 236 G +GG +LA IS S KLLRSTGKAAWIAGTTFL+LVVPLI Sbjct: 8 GKSGGGDPNILARISNSEIVSQGRRAAGDAVEVSKKLLRSTGKAAWIAGTTFLILVVPLI 67 Query: 237 IEMDREQQMVDLDLQQQALLGSPPT 311 IEMDRE Q+ +++LQQ +LLG+PP+ Sbjct: 68 IEMDREAQINEIELQQASLLGAPPS 92
>TO221_ARATH (O64497) Mitochondrial import receptor subunit TOM22 homolog 1| (Translocase of outer membrane 22 kDa subunit homolog 1) (Mitochondrial import receptor subunit TOM9-1) (Translocase of outer membrane 9 kDa subunit TOM9-1) Length = 94 Score = 72.8 bits (177), Expect = 4e-13 Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 4/90 (4%) Frame = +3 Query: 51 MASSSAVSKRGDAGGVLAAISR----SSXXXXXXXXXXXXXKLLRSTGKAAWIAGTTFLV 218 MA + +GD+ +LA IS S KLL+STGKAAWIAGTTFL+ Sbjct: 1 MAPKKIGAGKGDSS-ILAKISNYDIVSQGRRAACDAVYVSKKLLKSTGKAAWIAGTTFLI 59 Query: 219 LVVPLIIEMDREQQMVDLDLQQQALLGSPP 308 L VPLI+E++++ ++ ++D +Q +LLG+PP Sbjct: 60 LAVPLILELEQDHRLGEIDFEQASLLGTPP 89
>TOM22_MOUSE (Q9CPQ3) Mitochondrial import receptor subunit TOM22 homolog| (Translocase of outer membrane 22 kDa subunit homolog) Length = 141 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/66 (30%), Positives = 33/66 (50%) Frame = +3 Query: 114 RSSXXXXXXXXXXXXXKLLRSTGKAAWIAGTTFLVLVVPLIIEMDREQQMVDLDLQQQAL 293 RS+ K+ R + A WI T+F++LV+P++ E ++ Q LQQ+ + Sbjct: 59 RSAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQI 118 Query: 294 LGSPPT 311 L P T Sbjct: 119 LLGPNT 124
>TOM22_MACFA (Q4R3C7) Mitochondrial import receptor subunit TOM22 homolog| (Translocase of outer membrane 22 kDa subunit homolog) Length = 141 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/66 (30%), Positives = 33/66 (50%) Frame = +3 Query: 114 RSSXXXXXXXXXXXXXKLLRSTGKAAWIAGTTFLVLVVPLIIEMDREQQMVDLDLQQQAL 293 RS+ K+ R + A WI T+F++LV+P++ E ++ Q LQQ+ + Sbjct: 59 RSAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQI 118 Query: 294 LGSPPT 311 L P T Sbjct: 119 LLGPNT 124
>TOM22_HUMAN (Q9NS69) Mitochondrial import receptor subunit TOM22 homolog| (Translocase of outer membrane 22 kDa subunit homolog) (hTom22) (1C9-2) Length = 141 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/66 (30%), Positives = 33/66 (50%) Frame = +3 Query: 114 RSSXXXXXXXXXXXXXKLLRSTGKAAWIAGTTFLVLVVPLIIEMDREQQMVDLDLQQQAL 293 RS+ K+ R + A WI T+F++LV+P++ E ++ Q LQQ+ + Sbjct: 59 RSAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQI 118 Query: 294 LGSPPT 311 L P T Sbjct: 119 LLGPNT 124
>TOM22_SCHPO (O13813) Mitochondrial import receptor subunit tom22 (Mitochondrial| 22 kDa outer membrane protein) (Translocase of outer membrane 22 kDa subunit) Length = 144 Score = 37.7 bits (86), Expect = 0.015 Identities = 20/99 (20%), Positives = 43/99 (43%) Frame = +3 Query: 21 SSPDQNKGEGMASSSAVSKRGDAGGVLAAISRSSXXXXXXXXXXXXXKLLRSTGKAAWIA 200 S D++ EG+ + + + ++ R KL + GK+ W+ Sbjct: 36 SDSDESDFEGLEEETIIDRIAALKEIVPVTWRVKIADGAKTATTGLSKLAQFGGKSMWVI 95 Query: 201 GTTFLVLVVPLIIEMDREQQMVDLDLQQQALLGSPPTLA 317 T+ L+L VP ++ ++ E Q+ + + Q + G+ +A Sbjct: 96 STSALLLGVPFMMSLEEEAQLTEYEKQIKDQRGANEVIA 134
>TOM22_YEAST (P49334) Mitochondrial import receptor subunit TOM22 (Mitochondrial| 22 kDa outer membrane protein) (Translocase of outer membrane 22 kDa subunit) (Protein MAS17) (Mitochondrial 17 kDa assembly protein) Length = 151 Score = 31.6 bits (70), Expect = 1.1 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%) Frame = +3 Query: 177 TGKAAWIAGTTFLVLVVPLIIEMDREQQMVDL----DLQQQA 290 +G AW TT L+L VPL + + EQQ++++ DLQ A Sbjct: 94 SGNLAWTLTTTALLLGVPLSLSILAEQQLIEMEKTFDLQSDA 135
>GSPD2_DICD3 (Q01565) General secretion pathway protein D precursor (Pectic| enzymes secretion protein outD) Length = 710 Score = 30.4 bits (67), Expect = 2.4 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%) Frame = +3 Query: 3 SNQSLPSSPDQNKGEGMASSSAVSKRGDAGGVLAAISRSSX---XXXXXXXXXXXXKLLR 173 SN S PSSP G S+S+ G + G ++ S SS + + Sbjct: 300 SNASRPSSP--RSGSSSNSNSSSGSSGSSSGSSSSSSSSSSMGFGSAFGSTSSSGGRTIT 357 Query: 174 STGKAAWIAG---TTFLVLVVPLIIEMDREQQMVDLDLQQQALL 296 GK + T L++ P I D EQ + LD+++ +L Sbjct: 358 IQGKEVTVRAHDQTNSLIITAPPDIMRDLEQVINQLDIRRPQVL 401
>SLT11_YEAST (P38241) Pre-mRNA-splicing factor SLT11 (Synthetic lethality with| U2 protein 11) (Extracellular matrix protein 2) Length = 364 Score = 29.3 bits (64), Expect = 5.3 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +2 Query: 311 PRQINLSSCSLPSFTFHFAWYHKLSTIL-SLVCLCLLSERKIMPCC 445 P+ C+LP +HF + + I+ +L+C+ ++R I CC Sbjct: 29 PQGSECKICTLPFTLYHFKTSKRSNNIIKTLICVRCATQRNICQCC 74
>MEX1_DROME (P23487) Protein midgut expression 1| Length = 83 Score = 28.9 bits (63), Expect = 6.9 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +2 Query: 401 VCLCLLSERKIMPCCCDCDC 460 +C CL K++ CCC C C Sbjct: 5 LCECLKCPGKVVCCCCSCAC 24
>TECT1_HUMAN (Q2MV58) Tectonic-1 precursor| Length = 587 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = +2 Query: 386 TILSLVCLCLLSERKI-MPCCCDCDCS 463 T ++++C+C LS + + CCCD DCS Sbjct: 72 TDVAVLCVCDLSPAQCDINCCCDPDCS 98
>SLT11_CANGA (Q6FKZ2) Pre-mRNA-splicing factor SLT11| Length = 364 Score = 28.9 bits (63), Expect = 6.9 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = +2 Query: 335 CSLPSFTFHFAWYHKLSTIL-SLVCLCLLSERKIMPCC 445 C+LP +HF H+ + I+ +L+C +R + CC Sbjct: 42 CTLPYTLYHFKKSHRSADIIKTLICKKCAIQRNVCQCC 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,322,790 Number of Sequences: 219361 Number of extensions: 794320 Number of successful extensions: 3110 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3058 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3109 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
