ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart59b04 |
|---|---|
| Clone Library Name | barley_pub |
>DHB4_HUMAN (P51659) Peroxisomal multifunctional enzyme type 2 (MFE-2)| (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4) [Includes: D-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.107) (3-alpha,7-alpha,12-alpha-trihydroxy-5 Length = 735 Score = 83.6 bits (205), Expect = 2e-16 Identities = 43/120 (35%), Positives = 67/120 (55%) Frame = +1 Query: 61 ALAYKFPEVSFAYDERDVALYALGVGACGADAVDDXELHLVHHRDGQRHIKALPTFVSLF 240 A+ K P S+AY E + +YALGVGA D D L ++ +G LPTF + Sbjct: 326 AIGQKLPPFSYAYTELEAIMYALGVGASIKDPKD---LKFIY--EGSSDFSCLPTFGVII 380 Query: 241 PNKNSNGRGIVNVPGIHIDASLLLHGQQYIEIYKPIPSCASVVNKVKVAGLHDKGKATIL 420 K+ G G+ +PG+ I+ + +LHG+QY+E+YKP+P + + VA + DKG ++ Sbjct: 381 GQKSMMGGGLAEIPGLSINFAKVLHGEQYLELYKPLPRAGKLKCEAVVADVLDKGSGVVI 440
>DHB4_RAT (P97852) Peroxisomal multifunctional enzyme type 2 (MFE-2)| (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4) [Includes: D-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.107) (3-alpha,7-alpha,12-alpha-trihydroxy-5-b Length = 734 Score = 75.1 bits (183), Expect = 7e-14 Identities = 40/122 (32%), Positives = 66/122 (54%) Frame = +1 Query: 64 LAYKFPEVSFAYDERDVALYALGVGACGADAVDDXELHLVHHRDGQRHIKALPTFVSLFP 243 + +K P S +Y E +YALGVGA + D L V+ +G LPTF + Sbjct: 326 VGHKLPSFSSSYTELQCIMYALGVGASVKNPKD---LKFVY--EGSADFSCLPTFGVIVA 380 Query: 244 NKNSNGRGIVNVPGIHIDASLLLHGQQYIEIYKPIPSCASVVNKVKVAGLHDKGKATILE 423 K+ G+ VPG+ I+ + +LHG+QY+E+YKP+P + + +A + DKG ++ Sbjct: 381 QKSLMSGGLAEVPGLSINFAKVLHGEQYLELYKPLPRSGELKCEAVIADILDKGSGIVIV 440 Query: 424 IE 429 ++ Sbjct: 441 MD 442
>DHB4_MOUSE (P51660) Peroxisomal multifunctional enzyme type 2 (MFE-2)| (D-bifunctional protein) (DBP) (17-beta-hydroxysteroid dehydrogenase 4) (17-beta-HSD 4) [Includes: D-3-hydroxyacyl-CoA dehydratase (EC 4.2.1.107) (3-alpha,7-alpha,12-alpha-trihydroxy-5 Length = 734 Score = 74.7 bits (182), Expect = 9e-14 Identities = 40/123 (32%), Positives = 65/123 (52%) Frame = +1 Query: 61 ALAYKFPEVSFAYDERDVALYALGVGACGADAVDDXELHLVHHRDGQRHIKALPTFVSLF 240 A+ +K P S +Y E +YALGVGA + D L V+ +G LPTF + Sbjct: 325 AVGHKLPSFSSSYTELQSIMYALGVGASVKNPKD---LKFVY--EGSADFSCLPTFGVIV 379 Query: 241 PNKNSNGRGIVNVPGIHIDASLLLHGQQYIEIYKPIPSCASVVNKVKVAGLHDKGKATIL 420 K+ G+ VPG+ + + LHG+QY+E+YKP+P + + +A + DKG ++ Sbjct: 380 AQKSMMNGGLAEVPGLSFNFAKALHGEQYLELYKPLPRSGELKCEAVIADILDKGSGVVI 439 Query: 421 EIE 429 ++ Sbjct: 440 VMD 442
>FOX2_NEUCR (Q01373) Peroxisomal hydratase-dehydrogenase-epimerase (HDE)| (Multifunctional beta-oxidation protein) (MFP) [Includes: 2-enoyl-CoA hydratase (EC 4.2.1.-); D-3-hydroxyacyl CoA dehydrogenase (EC 1.1.1.-)] Length = 894 Score = 54.3 bits (129), Expect = 1e-07 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 1/112 (0%) Frame = +1 Query: 91 FAYDERDVALYALGVGACGADAVDDXELHLVHHRDGQRHIKALPTFVSLFPNKNSNGRGI 270 + + ERDV LY LG+GA D + + +G + +PTF + P N+ Sbjct: 628 YTFTERDVCLYNLGIGAKRTD--------IKYIFEGNEDFEVVPTF-GVIPPFNTEMPFS 678 Query: 271 VNVPGIHIDASLLLHGQQYIEIYK-PIPSCASVVNKVKVAGLHDKGKATILE 423 + + +LLHG+QY+E+ K PIP+ +V+K K+ + DKG A I++ Sbjct: 679 FDDIVPNFSPMMLLHGEQYLEVRKYPIPTSGRLVSKGKLLEVVDKGSAAIVK 730
>FOX2_YEAST (Q02207) Peroxisomal hydratase-dehydrogenase-epimerase (HDE)| (Multifunctional beta-oxidation protein) (MFP) [Includes: 2-enoyl-CoA hydratase (EC 4.2.1.-); D-3-hydroxyacyl CoA dehydrogenase (EC 1.1.1.-)] Length = 900 Score = 35.4 bits (80), Expect = 0.061 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 2/112 (1%) Frame = +1 Query: 91 FAYDERDVALYALGVGACGADAVDDXELHLVHHRDGQRHIKALPTFVSLFPNKNSNGRGI 270 F Y +D LY LG+G EL + D + LPTF ++ P + Sbjct: 624 FKYTTKDCILYNLGLGCTSK------ELKYTYENDPD--FQVLPTF-AVIPFMQATATLA 674 Query: 271 VNVPGIHIDASLLLHGQQYIEIYKP-IPSCASVVNKVKVAGLHDK-GKATIL 420 ++ + + ++LLHG+QY ++ P +PS ++ K + DK GKA ++ Sbjct: 675 MDNLVDNFNYAMLLHGEQYFKLCTPTMPSNGTLKTLAKPLQVLDKNGKAALV 726
>FOX2_CANTR (P22414) Peroxisomal hydratase-dehydrogenase-epimerase (HDE)| (Multifunctional beta-oxidation protein) (MFP) [Includes: 2-enoyl-CoA hydratase (EC 4.2.1.-); D-3-hydroxyacyl CoA dehydrogenase (EC 1.1.1.-)] Length = 906 Score = 34.3 bits (77), Expect = 0.13 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 1/109 (0%) Frame = +1 Query: 97 YDERDVALYALGVGACGADAVDDXELHLVHHRDGQRHIKALPTFVSLFPNKNSNGRGIVN 276 +D+RDV LY + +GA +L V+ D + +PTF L + + Sbjct: 635 FDDRDVILYNIALGAT------TKQLKYVYENDSD--FQVIPTFGHLITFNSGKSQNSFA 686 Query: 277 VPGIHIDASLLLHGQQYIEIYK-PIPSCASVVNKVKVAGLHDKGKATIL 420 + + LLLHG+ Y++++ P P+ + + KG ++ Sbjct: 687 KLLRNFNPMLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVI 735
>HEM3_STAES (Q8CNY8) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 308 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = +1 Query: 97 YDERDVALYALGVGACGADAVDDXE-----LHLVHHRDGQRHIKALPTFVS 234 Y +RD+ L A+G GA G + D + L VH+ D + + A TF+S Sbjct: 185 YLDRDILLPAIGQGALGIECRSDDKELLDLLSKVHNHDVAQCVTAERTFLS 235
>HEM3_STAEQ (Q5HNN3) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 308 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = +1 Query: 97 YDERDVALYALGVGACGADAVDDXE-----LHLVHHRDGQRHIKALPTFVS 234 Y +RD+ L A+G GA G + D + L VH+ D + + A TF+S Sbjct: 185 YLDRDILLPAIGQGALGIECRSDDKELLDLLSKVHNHDVAQCVTAERTFLS 235
>ABLM2_HUMAN (Q6H8Q1) Actin-binding LIM protein 2 (Actin-binding LIM protein| family member 2) (abLIM2) Length = 611 Score = 28.5 bits (62), Expect = 7.4 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Frame = -3 Query: 367 QHWHMKGLACRSLCIVDRAI----EGLHRCECQAH*QFHAHCCSC 245 +HWH+ C+S + A +GL CE H +F C SC Sbjct: 171 KHWHLGCFKCKSCGKLLNAEYISKDGLPYCEADYHAKFGIRCDSC 215
>FPG_STRT2 (Q5M576) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)| (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM) Length = 272 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 4/28 (14%) Frame = +1 Query: 319 QQYIEIY----KPIPSCASVVNKVKVAG 390 Q Y+++Y +P P CAS++ K+K+ G Sbjct: 233 QNYLQVYGKTGQPCPRCASMIVKIKLGG 260
>FPG_STRT1 (Q5M0P0) Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)| (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM) (EC 4.2.99.18) (AP lyase mutM) Length = 272 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 4/28 (14%) Frame = +1 Query: 319 QQYIEIY----KPIPSCASVVNKVKVAG 390 Q Y+++Y +P P CAS++ K+K+ G Sbjct: 233 QNYLQVYGKTGQPCPRCASMIVKIKLGG 260
>YL613_MIMIV (Q5UP74) Hypothetical protein L613| Length = 386 Score = 28.1 bits (61), Expect = 9.7 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = -1 Query: 423 LENSCFPFVVQTSYLNL 373 +ENSC P +++T YL+L Sbjct: 183 IENSCIPVIIETDYLDL 199
>HEM3_BACSK (Q5WEP5) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 311 Score = 28.1 bits (61), Expect = 9.7 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Frame = +1 Query: 82 EVSFAYDERDVALYALGVGACGADA-VDDXE----LHLVHHRDGQRHIKALPTFVSLFPN 246 +V Y ++DV L A+G GA G + VDD E L +HH + + + A F+ Sbjct: 180 DVITEYLDKDVCLPAIGQGALGLECRVDDVETTELLAKLHHEETGKAVLAERAFL----- 234 Query: 247 KNSNGRGIVNVPG 285 K NG V + G Sbjct: 235 KEMNGGCQVPIGG 247 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,331,108 Number of Sequences: 219361 Number of extensions: 770960 Number of successful extensions: 2216 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2190 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2210 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
