ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart59a12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK061002.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G09, full insert sequence Length = 1202 Score = 222 bits (112), Expect = 7e-55 Identities = 174/195 (89%) Strand = Plus / Plus Query: 236 tcgccgtcgatcccaaggttgaaacgttactagacagtgtgaagtgggacgtcaaagggc 295 ||||||||||||| ||||| ||| | ||||||||||||||||||||||| ||||| Sbjct: 260 tcgccgtcgatcctaaggtcgaagcaatactagacagtgtgaagtgggacagtaaaggct 319 Query: 296 tggcagttgcgattgcgcaaaatgtggatactggagccattcttatgcagggctttgcta 355 |||| ||||| ||||| |||||||||||||||||||||||||| |||||||| ||||| | Sbjct: 320 tggctgttgctattgcccaaaatgtggatactggagccattctcatgcagggttttgcca 379 Query: 356 acaaagaggcccttgcagcaactatatcgaccagaanagctacattctatagccgttcac 415 ||||||| ||||||||| |||||||||| ||||| | ||||||||||||||||||||||| Sbjct: 380 acaaagaagcccttgcaacaactatatcaaccaggaaagctacattctatagccgttcac 439 Query: 416 ggtcttcattgtgga 430 ||||||||||||||| Sbjct: 440 ggtcttcattgtgga 454
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 208 bits (105), Expect = 1e-50 Identities = 152/168 (90%) Strand = Plus / Minus Query: 263 tactagacagtgtgaagtgggacgtcaaagggctggcagttgcgattgcgcaaaatgtgg 322 ||||||||||||||||||||||| ||||| |||| ||||| ||||| |||||||||| Sbjct: 9687064 tactagacagtgtgaagtgggacagtaaaggcttggctgttgctattgcccaaaatgtgg 9687005 Query: 323 atactggagccattcttatgcagggctttgctaacaaagaggcccttgcagcaactatat 382 |||||||||||||||| |||||||| ||||| |||||||| ||||||||| ||||||||| Sbjct: 9687004 atactggagccattctcatgcagggttttgccaacaaagaagcccttgcaacaactatat 9686945 Query: 383 cgaccagaanagctacattctatagccgttcacggtcttcattgtgga 430 | ||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 9686944 caaccaggaaagctacattctatagccgttcacggtcttcattgtgga 9686897
>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0038F12 Length = 190014 Score = 208 bits (105), Expect = 1e-50 Identities = 152/168 (90%) Strand = Plus / Minus Query: 263 tactagacagtgtgaagtgggacgtcaaagggctggcagttgcgattgcgcaaaatgtgg 322 ||||||||||||||||||||||| ||||| |||| ||||| ||||| |||||||||| Sbjct: 125067 tactagacagtgtgaagtgggacagtaaaggcttggctgttgctattgcccaaaatgtgg 125008 Query: 323 atactggagccattcttatgcagggctttgctaacaaagaggcccttgcagcaactatat 382 |||||||||||||||| |||||||| ||||| |||||||| ||||||||| ||||||||| Sbjct: 125007 atactggagccattctcatgcagggttttgccaacaaagaagcccttgcaacaactatat 124948 Query: 383 cgaccagaanagctacattctatagccgttcacggtcttcattgtgga 430 | ||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 124947 caaccaggaaagctacattctatagccgttcacggtcttcattgtgga 124900
>dbj|AK099335.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024J06, full insert sequence Length = 1159 Score = 206 bits (104), Expect = 4e-50 Identities = 173/195 (88%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 236 tcgccgtcgatcccaaggttgaaacgttactagacagtgtgaagtgggacgtcaaagggc 295 ||||||||||||| ||||| ||| | ||||||||||||||||||||||| ||||| Sbjct: 223 tcgccgtcgatcctaaggtcgaagcaatactagacagtgtgaagtgggacagtaaaggct 282 Query: 296 tggcagttgcgattgcgcaaaatgtggatactggagccattcttatgcagggctttgcta 355 |||| ||||| ||||| |||||||||||||||||||||||||| |||||||| | ||| | Sbjct: 283 tggctgttgctattgcccaaaatgtggatactggagccattctcatgcaggg-tctgcca 341 Query: 356 acaaagaggcccttgcagcaactatatcgaccagaanagctacattctatagccgttcac 415 ||||||| ||||||||| |||||||||| ||||| | ||||||||||||||||||||||| Sbjct: 342 acaaagaagcccttgcaacaactatatcaaccaggaaagctacattctatagccgttcac 401 Query: 416 ggtcttcattgtgga 430 ||||||||||||||| Sbjct: 402 ggtcttcattgtgga 416
>gb|BT009183.1| Triticum aestivum clone wl1n.pk0130.g11:fis, full insert mRNA sequence Length = 1174 Score = 200 bits (101), Expect = 3e-48 Identities = 160/180 (88%) Strand = Plus / Plus Query: 251 aggttgaaacgttactagacagtgtgaagtgggacgtcaaagggctggcagttgcgattg 310 ||||||| || || ||||||||||||||||||||| ||||||| |||| ||||| |||| Sbjct: 234 aggttgacacattgctagacagtgtgaagtgggacagcaaagggttggctgttgccattg 293 Query: 311 cgcaaaatgtggatactggagccattcttatgcagggctttgctaacaaagaggcccttg 370 | ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct: 294 cacaaaatgtggatactggagccattcttatgcagggttttgctaataaagaagcccttg 353 Query: 371 cagcaactatatcgaccagaanagctacattctatagccgttcacggtcttcattgtgga 430 || ||||||||| ||||| | ||| ||||||| |||||||||||||||||| ||||||| Sbjct: 354 caaaaactatatcaaccaggaaagccacattctttagccgttcacggtcttccttgtgga 413
>gb|BT009147.1| Triticum aestivum clone wl1n.pk0059.e6:fis, full insert mRNA sequence Length = 1174 Score = 200 bits (101), Expect = 3e-48 Identities = 160/180 (88%) Strand = Plus / Plus Query: 251 aggttgaaacgttactagacagtgtgaagtgggacgtcaaagggctggcagttgcgattg 310 ||||||| || || ||||||||||||||||||||| ||||||| |||| ||||| |||| Sbjct: 234 aggttgacacattgctagacagtgtgaagtgggacagcaaagggttggctgttgccattg 293 Query: 311 cgcaaaatgtggatactggagccattcttatgcagggctttgctaacaaagaggcccttg 370 | ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct: 294 cacaaaatgtggatactggagccattcttatgcagggttttgctaataaagaagcccttg 353 Query: 371 cagcaactatatcgaccagaanagctacattctatagccgttcacggtcttcattgtgga 430 || ||||||||| ||||| | ||| ||||||| |||||||||||||||||| ||||||| Sbjct: 354 caaaaactatatcaaccaggaaagccacattctttagccgttcacggtcttccttgtgga 413
>gb|AY109330.1| Zea mays CL45_1 mRNA sequence Length = 3772 Score = 186 bits (94), Expect = 4e-44 Identities = 157/180 (87%) Strand = Plus / Plus Query: 251 aggttgaaacgttactagacagtgtgaagtgggacgtcaaagggctggcagttgcgattg 310 ||||||| || || ||||||||||||||||||||| ||||||| |||| ||||| |||| Sbjct: 241 aggttgacacattgctagacagtgtgaagtgggacagcaaagggttggctgttgccattg 300 Query: 311 cgcaaaatgtggatactggagccattcttatgcagggctttgctaacaaagaggcccttg 370 | ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| Sbjct: 301 cacaaaatgtggatactggagccattcttatgcagggttttgctaataaagaagcccttg 360 Query: 371 cagcaactatatcgaccagaanagctacattctatagccgttcacggtcttcattgtgga 430 | ||||||| ||||| | ||| ||||||| |||||||||||||||||| ||||||| Sbjct: 361 cnnnnnctatatcaaccaggaaagccacattctttagccgttcacggtcttccttgtgga 420
>ref|NM_188093.1| Oryza sativa (japonica cultivar-group), Ozsa8525 predicted mRNA Length = 609 Score = 127 bits (64), Expect = 3e-26 Identities = 84/91 (92%) Strand = Plus / Plus Query: 340 atgcagggctttgctaacaaagaggcccttgcagcaactatatcgaccagaanagctaca 399 |||||||| ||||| |||||||| ||||||||| |||||||||| ||||| | ||||||| Sbjct: 1 atgcagggttttgccaacaaagaagcccttgcaacaactatatcaaccaggaaagctaca 60 Query: 400 ttctatagccgttcacggtcttcattgtgga 430 ||||||||||||||||||||||||||||||| Sbjct: 61 ttctatagccgttcacggtcttcattgtgga 91
>gb|AY112722.1| Bifidobacterium longum strain RW041 plasmid pNAC3, complete sequence Length = 10224 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 81 ctcctcgcccgcgacccgcgccgcc 105 |||||||||||||||| |||||||| Sbjct: 6289 ctcctcgcccgcgaccagcgccgcc 6313
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 cctcgggtggcggcgcaggca 179 ||||||||||||||||||||| Sbjct: 230396 cctcgggtggcggcgcaggca 230376
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 acggctgcggcgccatcctcg 153 ||||||||||||||||||||| Sbjct: 6179661 acggctgcggcgccatcctcg 6179641
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 ctcgcccgcgacccgcgccgc 104 ||||||||||||||||||||| Sbjct: 2542064 ctcgcccgcgacccgcgccgc 2542084
>emb|CT009567.9| Mouse DNA sequence from clone RP23-50H13 on chromosome 16, complete sequence Length = 213704 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ccagcccgctccaacccttg 131 |||||||||||||||||||| Sbjct: 30580 ccagcccgctccaacccttg 30599
>gb|AY082333.1| Delftia acidovorans xanthine dehydrogenase small subunit (xdhA), xanthine dehydrogenase large subunit (xdhB), putative xanthine/uracil permease (xprA), putative sulfonate binding protein (ssuA), putative sulfonate transporter permease component (ssuC), and putative sulfonate transporter ATP-binding subunit (ssuB) genes, complete cds Length = 9263 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 cgcccggccgacgccagcag 232 |||||||||||||||||||| Sbjct: 7654 cgcccggccgacgccagcag 7635
>gb|AC121775.3| Mus musculus BAC clone RP23-356B13 from chromosome 6, complete sequence Length = 188443 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 gacgccagcagccctcgccgtcga 245 |||||||| ||||||||||||||| Sbjct: 1977 gacgccaggagccctcgccgtcga 2000
>gb|AC090610.6| Homo sapiens chromosome 17, clone RP11-493I24, complete sequence Length = 185980 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 cctcgcccgcgacccgcgccgccc 106 ||||||||||| |||||||||||| Sbjct: 63636 cctcgcccgcgccccgcgccgccc 63613
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 cctcgcccgcgacccgcgcc 102 |||||||||||||||||||| Sbjct: 359127 cctcgcccgcgacccgcgcc 359108
>gb|AC140330.3| Mus musculus BAC clone RP23-410I24 from 6, complete sequence Length = 185681 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 222 gacgccagcagccctcgccgtcga 245 |||||||| ||||||||||||||| Sbjct: 83789 gacgccaggagccctcgccgtcga 83812 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,478,801 Number of Sequences: 3902068 Number of extensions: 2478801 Number of successful extensions: 45242 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44852 Number of HSP's gapped (non-prelim): 389 length of query: 430 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 408 effective length of database: 17,147,199,772 effective search space: 6996057506976 effective search space used: 6996057506976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
