ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart59a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome... 64 1e-07
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 64 1e-07
3emb|AL136450.8| Human DNA sequence from clone RP3-510O21 on chro... 42 0.43
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.43
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.43
6dbj|AK060331.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.43
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.43
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.43
9emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa... 42 0.43
10emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb... 42 0.43
11ref|XM_362110.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 1.7
12ref|XM_677557.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 1.7
13emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in ... 40 1.7
14ref|XM_519651.1| PREDICTED: Pan troglodytes similar to early gro... 38 6.7
15ref|XM_367368.1| Magnaporthe grisea 70-15 hypothetical protein (... 38 6.7
16gb|AC145952.3| Pan troglodytes BAC clone RP43-18D16 from 7, comp... 38 6.7
17emb|X63741.1|HSPILMRNA H.sapiens pilot mRNA 38 6.7
18gb|AC083867.7| Homo sapiens chromosome 7 clone RP11-183I20, comp... 38 6.7
19gb|AC105423.4| Homo sapiens BAC clone RP11-746G6 from 4, complet... 38 6.7
20ref|NM_004430.2| Homo sapiens early growth response 3 (EGR3), mRNA 38 6.7
21gb|S40832.1| EGR3=EGR3 protein [human, HG 6.6, Zap33, Zap5a, Zap... 38 6.7
22gb|AC010879.2|AC010879 Homo sapiens BAC clone RP11-235I1 from Y,... 38 6.7
23gb|AC105046.10| Homo sapiens chromosome 8, clone CTD-3247F14, co... 38 6.7
24dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 38 6.7
25emb|AL669967.12| Mouse DNA sequence from clone RP23-216M21 on ch... 38 6.7
26dbj|AP002964.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 38 6.7
27emb|CR956367.12| Pig DNA sequence from clone PigE-122C21 on chro... 38 6.7
28emb|AL808114.11| Mouse DNA sequence from clone RP23-146A17 on ch... 38 6.7
29emb|AL645468.11| Mouse DNA sequence from clone RP23-246F18 on ch... 38 6.7

>gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1320_D10,
             complete sequence
          Length = 134183

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 85    ccatggccctcccctcgcgcgccgccgatttcccccacgtctccctcccctc 136
             ||||||||||| |||| ||||||||||  ||||||||| |||||||||||||
Sbjct: 50320 ccatggccctctcctcccgcgccgccgccttcccccacatctccctcccctc 50371



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                    
Query: 85       ccatggccctcccctcgcgcgccgccgatttcccccacgtctccctcccctc 136
                ||||||||||| |||| ||||||||||  ||||||||| |||||||||||||
Sbjct: 16551581 ccatggccctctcctcccgcgccgccgccttcccccacatctccctcccctc 16551632



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>emb|AL136450.8| Human DNA sequence from clone RP3-510O21 on chromosome Xq25-26.1
             Contains the 3' end of a novel gene (FLJ11362), the 3' end
             of the ELF4 gene for  E74-like factor 4 (ets domain
             transcription factor) (MEF, ELFR) and a CpG island,
             complete sequence
          Length = 43480

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 91    ccctcccctcgcgcgccgccg 111
             |||||||||||||||||||||
Sbjct: 29075 ccctcccctcgcgcgccgccg 29055



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
             complete sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 115   tcccccacgtctccctcccct 135
             |||||||||||||||||||||
Sbjct: 12131 tcccccacgtctccctcccct 12111



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
             complete sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 115   tcccccacgtctccctcccct 135
             |||||||||||||||||||||
Sbjct: 13746 tcccccacgtctccctcccct 13726



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>dbj|AK060331.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-B05, full
           insert sequence
          Length = 1201

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 115 tcccccacgtctccctcccct 135
           |||||||||||||||||||||
Sbjct: 756 tcccccacgtctccctcccct 776



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 115   tcccccacgtctccctcccct 135
             |||||||||||||||||||||
Sbjct: 13746 tcccccacgtctccctcccct 13726



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 115   tcccccacgtctccctcccct 135
             |||||||||||||||||||||
Sbjct: 12131 tcccccacgtctccctcccct 12111



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>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147503

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 115   tcccccacgtctccctcccct 135
             |||||||||||||||||||||
Sbjct: 13746 tcccccacgtctccctcccct 13726



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>emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131346

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 115   tcccccacgtctccctcccct 135
             |||||||||||||||||||||
Sbjct: 12131 tcccccacgtctccctcccct 12111



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>ref|XM_362110.1| Magnaporthe grisea 70-15 hypothetical protein (MG04555.4) partial
           cds
          Length = 1182

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 97  cctcgcgcgccgccgatttcccccacgt 124
           ||||||||  ||||||||||||||||||
Sbjct: 299 cctcgcgctgcgccgatttcccccacgt 326



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>ref|XM_677557.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN9380.2), mRNA
          Length = 714

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 ccacgtctccctcccctcgc 138
           ||||||||||||||||||||
Sbjct: 300 ccacgtctccctcccctcgc 319



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>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25,
             complete sequence
          Length = 169168

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   cgcgcgccgccgatttcccc 119
             ||||||||||||||||||||
Sbjct: 56511 cgcgcgccgccgatttcccc 56492



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>ref|XM_519651.1| PREDICTED: Pan troglodytes similar to early growth response 3; zinc
            finger protein pilot (LOC464048), mRNA
          Length = 2982

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 113  tttcccccacgtctccctc 131
            |||||||||||||||||||
Sbjct: 1517 tttcccccacgtctccctc 1535



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>ref|XM_367368.1| Magnaporthe grisea 70-15 hypothetical protein (MG07293.4) partial
           mRNA
          Length = 1368

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 92  cctcccctcgcgcgccgcc 110
           |||||||||||||||||||
Sbjct: 672 cctcccctcgcgcgccgcc 654



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>gb|AC145952.3| Pan troglodytes BAC clone RP43-18D16 from 7, complete sequence
          Length = 160354

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 79    aaccacccatggccctccc 97
             |||||||||||||||||||
Sbjct: 84471 aaccacccatggccctccc 84453



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>emb|X63741.1|HSPILMRNA H.sapiens pilot mRNA
          Length = 4272

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 113  tttcccccacgtctccctc 131
            |||||||||||||||||||
Sbjct: 1892 tttcccccacgtctccctc 1910



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>gb|AC083867.7| Homo sapiens chromosome 7 clone RP11-183I20, complete sequence
          Length = 148251

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 79    aaccacccatggccctccc 97
             |||||||||||||||||||
Sbjct: 98693 aaccacccatggccctccc 98675



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>gb|AC105423.4| Homo sapiens BAC clone RP11-746G6 from 4, complete sequence
          Length = 100760

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 79    aaccacccatggccctccc 97
             |||||||||||||||||||
Sbjct: 83888 aaccacccatggccctccc 83870



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>ref|NM_004430.2| Homo sapiens early growth response 3 (EGR3), mRNA
          Length = 4342

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 113  tttcccccacgtctccctc 131
            |||||||||||||||||||
Sbjct: 1897 tttcccccacgtctccctc 1915



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>gb|S40832.1| EGR3=EGR3 protein [human, HG 6.6, Zap33, Zap5a, Zap4, mRNA, 4289 nt]
          Length = 4289

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 113  tttcccccacgtctccctc 131
            |||||||||||||||||||
Sbjct: 1896 tttcccccacgtctccctc 1914



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>gb|AC010879.2|AC010879 Homo sapiens BAC clone RP11-235I1 from Y, complete sequence
          Length = 181721

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 79    aaccacccatggccctccc 97
             |||||||||||||||||||
Sbjct: 88230 aaccacccatggccctccc 88212



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>gb|AC105046.10| Homo sapiens chromosome 8, clone CTD-3247F14, complete sequence
          Length = 87734

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 113   tttcccccacgtctccctc 131
             |||||||||||||||||||
Sbjct: 35855 tttcccccacgtctccctc 35873



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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 98      ctcgcgcgccgccgatttcccccacgt 124
               |||||||||||||| |||| |||||||
Sbjct: 2517551 ctcgcgcgccgccgttttcacccacgt 2517577



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>emb|AL669967.12| Mouse DNA sequence from clone RP23-216M21 on chromosome X, complete
             sequence
          Length = 219583

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 111   gatttcccccacgtctccctccc 133
             |||||||||||| ||||||||||
Sbjct: 40938 gatttcccccacctctccctccc 40916



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>dbj|AP002964.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-114K7, complete
             sequence
          Length = 127508

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 110   cgatttcccccacgtctccctcccctc 136
             ||||||||||||  |||||||||||||
Sbjct: 71273 cgatttcccccaactctccctcccctc 71247



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>emb|CR956367.12| Pig DNA sequence from clone PigE-122C21 on chromosome 17, complete
            sequence
          Length = 124577

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 116  cccccacgtctccctcccctcgc 138
            |||||||| ||||||||||||||
Sbjct: 3925 cccccacgcctccctcccctcgc 3903



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>emb|AL808114.11| Mouse DNA sequence from clone RP23-146A17 on chromosome 4, complete
             sequence
          Length = 41153

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 112   atttcccccacgtctccctcccc 134
             ||||||||||||||| |||||||
Sbjct: 40925 atttcccccacgtctgcctcccc 40947



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>emb|AL645468.11| Mouse DNA sequence from clone RP23-246F18 on chromosome 4, complete
            sequence
          Length = 209764

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 112  atttcccccacgtctccctcccc 134
            ||||||||||||||| |||||||
Sbjct: 1772 atttcccccacgtctgcctcccc 1794


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 643,711
Number of Sequences: 3902068
Number of extensions: 643711
Number of successful extensions: 53118
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52899
Number of HSP's gapped (non-prelim): 219
length of query: 141
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 120
effective length of database: 17,151,101,840
effective search space: 2058132220800
effective search space used: 2058132220800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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