| Clone Name | bart59a11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1320_D10, complete sequence Length = 134183 Score = 63.9 bits (32), Expect = 1e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 85 ccatggccctcccctcgcgcgccgccgatttcccccacgtctccctcccctc 136 ||||||||||| |||| |||||||||| ||||||||| ||||||||||||| Sbjct: 50320 ccatggccctctcctcccgcgccgccgccttcccccacatctccctcccctc 50371
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 63.9 bits (32), Expect = 1e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 85 ccatggccctcccctcgcgcgccgccgatttcccccacgtctccctcccctc 136 ||||||||||| |||| |||||||||| ||||||||| ||||||||||||| Sbjct: 16551581 ccatggccctctcctcccgcgccgccgccttcccccacatctccctcccctc 16551632
>emb|AL136450.8| Human DNA sequence from clone RP3-510O21 on chromosome Xq25-26.1 Contains the 3' end of a novel gene (FLJ11362), the 3' end of the ELF4 gene for E74-like factor 4 (ets domain transcription factor) (MEF, ELFR) and a CpG island, complete sequence Length = 43480 Score = 42.1 bits (21), Expect = 0.43 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 ccctcccctcgcgcgccgccg 111 ||||||||||||||||||||| Sbjct: 29075 ccctcccctcgcgcgccgccg 29055
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 0.43 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 tcccccacgtctccctcccct 135 ||||||||||||||||||||| Sbjct: 12131 tcccccacgtctccctcccct 12111
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 0.43 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 tcccccacgtctccctcccct 135 ||||||||||||||||||||| Sbjct: 13746 tcccccacgtctccctcccct 13726
>dbj|AK060331.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-B05, full insert sequence Length = 1201 Score = 42.1 bits (21), Expect = 0.43 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 tcccccacgtctccctcccct 135 ||||||||||||||||||||| Sbjct: 756 tcccccacgtctccctcccct 776
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 0.43 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 tcccccacgtctccctcccct 135 ||||||||||||||||||||| Sbjct: 13746 tcccccacgtctccctcccct 13726
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 0.43 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 tcccccacgtctccctcccct 135 ||||||||||||||||||||| Sbjct: 12131 tcccccacgtctccctcccct 12111
>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147503 Score = 42.1 bits (21), Expect = 0.43 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 tcccccacgtctccctcccct 135 ||||||||||||||||||||| Sbjct: 13746 tcccccacgtctccctcccct 13726
>emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131346 Score = 42.1 bits (21), Expect = 0.43 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 tcccccacgtctccctcccct 135 ||||||||||||||||||||| Sbjct: 12131 tcccccacgtctccctcccct 12111
>ref|XM_362110.1| Magnaporthe grisea 70-15 hypothetical protein (MG04555.4) partial cds Length = 1182 Score = 40.1 bits (20), Expect = 1.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 97 cctcgcgcgccgccgatttcccccacgt 124 |||||||| |||||||||||||||||| Sbjct: 299 cctcgcgctgcgccgatttcccccacgt 326
>ref|XM_677557.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN9380.2), mRNA Length = 714 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 ccacgtctccctcccctcgc 138 |||||||||||||||||||| Sbjct: 300 ccacgtctccctcccctcgc 319
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 cgcgcgccgccgatttcccc 119 |||||||||||||||||||| Sbjct: 56511 cgcgcgccgccgatttcccc 56492
>ref|XM_519651.1| PREDICTED: Pan troglodytes similar to early growth response 3; zinc finger protein pilot (LOC464048), mRNA Length = 2982 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 tttcccccacgtctccctc 131 ||||||||||||||||||| Sbjct: 1517 tttcccccacgtctccctc 1535
>ref|XM_367368.1| Magnaporthe grisea 70-15 hypothetical protein (MG07293.4) partial mRNA Length = 1368 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 cctcccctcgcgcgccgcc 110 ||||||||||||||||||| Sbjct: 672 cctcccctcgcgcgccgcc 654
>gb|AC145952.3| Pan troglodytes BAC clone RP43-18D16 from 7, complete sequence Length = 160354 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 aaccacccatggccctccc 97 ||||||||||||||||||| Sbjct: 84471 aaccacccatggccctccc 84453
>emb|X63741.1|HSPILMRNA H.sapiens pilot mRNA Length = 4272 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 tttcccccacgtctccctc 131 ||||||||||||||||||| Sbjct: 1892 tttcccccacgtctccctc 1910
>gb|AC083867.7| Homo sapiens chromosome 7 clone RP11-183I20, complete sequence Length = 148251 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 aaccacccatggccctccc 97 ||||||||||||||||||| Sbjct: 98693 aaccacccatggccctccc 98675
>gb|AC105423.4| Homo sapiens BAC clone RP11-746G6 from 4, complete sequence Length = 100760 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 aaccacccatggccctccc 97 ||||||||||||||||||| Sbjct: 83888 aaccacccatggccctccc 83870
>ref|NM_004430.2| Homo sapiens early growth response 3 (EGR3), mRNA Length = 4342 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 tttcccccacgtctccctc 131 ||||||||||||||||||| Sbjct: 1897 tttcccccacgtctccctc 1915
>gb|S40832.1| EGR3=EGR3 protein [human, HG 6.6, Zap33, Zap5a, Zap4, mRNA, 4289 nt] Length = 4289 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 tttcccccacgtctccctc 131 ||||||||||||||||||| Sbjct: 1896 tttcccccacgtctccctc 1914
>gb|AC010879.2|AC010879 Homo sapiens BAC clone RP11-235I1 from Y, complete sequence Length = 181721 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 aaccacccatggccctccc 97 ||||||||||||||||||| Sbjct: 88230 aaccacccatggccctccc 88212
>gb|AC105046.10| Homo sapiens chromosome 8, clone CTD-3247F14, complete sequence Length = 87734 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 tttcccccacgtctccctc 131 ||||||||||||||||||| Sbjct: 35855 tttcccccacgtctccctc 35873
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 38.2 bits (19), Expect = 6.7 Identities = 25/27 (92%) Strand = Plus / Plus Query: 98 ctcgcgcgccgccgatttcccccacgt 124 |||||||||||||| |||| ||||||| Sbjct: 2517551 ctcgcgcgccgccgttttcacccacgt 2517577
>emb|AL669967.12| Mouse DNA sequence from clone RP23-216M21 on chromosome X, complete sequence Length = 219583 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 111 gatttcccccacgtctccctccc 133 |||||||||||| |||||||||| Sbjct: 40938 gatttcccccacctctccctccc 40916
>dbj|AP002964.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-114K7, complete sequence Length = 127508 Score = 38.2 bits (19), Expect = 6.7 Identities = 25/27 (92%) Strand = Plus / Minus Query: 110 cgatttcccccacgtctccctcccctc 136 |||||||||||| ||||||||||||| Sbjct: 71273 cgatttcccccaactctccctcccctc 71247
>emb|CR956367.12| Pig DNA sequence from clone PigE-122C21 on chromosome 17, complete sequence Length = 124577 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 116 cccccacgtctccctcccctcgc 138 |||||||| |||||||||||||| Sbjct: 3925 cccccacgcctccctcccctcgc 3903
>emb|AL808114.11| Mouse DNA sequence from clone RP23-146A17 on chromosome 4, complete sequence Length = 41153 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 112 atttcccccacgtctccctcccc 134 ||||||||||||||| ||||||| Sbjct: 40925 atttcccccacgtctgcctcccc 40947
>emb|AL645468.11| Mouse DNA sequence from clone RP23-246F18 on chromosome 4, complete sequence Length = 209764 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 112 atttcccccacgtctccctcccc 134 ||||||||||||||| ||||||| Sbjct: 1772 atttcccccacgtctgcctcccc 1794 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 643,711 Number of Sequences: 3902068 Number of extensions: 643711 Number of successful extensions: 53118 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52899 Number of HSP's gapped (non-prelim): 219 length of query: 141 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 120 effective length of database: 17,151,101,840 effective search space: 2058132220800 effective search space used: 2058132220800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)