ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart58g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK071175.1| Oryza sativa (japonica cultivar-group) cDNA clon... 341 1e-90
2dbj|AK060274.1| Oryza sativa (japonica cultivar-group) cDNA clon... 341 1e-90
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
4dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
5gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 44 0.38
6gb|AY658210.1| Synthetic construct Peudomonas aeruginosa clone F... 44 0.38
7gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 44 0.38
8emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.38
9gb|AE004832.1| Pseudomonas aeruginosa PAO1, section 393 of 529 o... 44 0.38
10gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 44 0.38
11ref|XM_464852.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
12ref|XM_506764.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 1.5
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
14gb|AF139211.2| Oryza sativa pre-mRNA splicing factor mRNA, compl... 42 1.5
15dbj|AP005510.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
16dbj|AP004018.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17dbj|AK099051.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
18dbj|AK062577.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
19emb|AJ550897.1|TRU550897 Takifugu rubripes ptr1 gene for parathy... 42 1.5
20gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 5.9
21ref|XM_472784.1| Oryza sativa (japonica cultivar-group), predic... 40 5.9
22ref|XM_427945.1| PREDICTED: Gallus gallus similar to CG3524-PA (... 40 5.9
23gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 5.9
24ref|XM_418587.1| PREDICTED: Gallus gallus similar to CG3524-PA (... 40 5.9
25ref|XM_546147.2| PREDICTED: Canis familiaris similar to KIAA1274... 40 5.9
26emb|AL035413.19|HS657E11 Human DNA sequence from clone RP4-657E1... 40 5.9
27gb|AC084024.17| Homo sapiens chromosome 8, clone RP11-90P5, comp... 40 5.9
28gb|CP000088.1| Thermobifida fusca YX, complete genome 40 5.9
29emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.9
30emb|BX640428.1| Bordetella parapertussis strain 12822, complete ... 40 5.9
31emb|BX640414.1| Bordetella pertussis strain Tohama I, complete g... 40 5.9
32emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4,... 40 5.9
33dbj|AB199902.1| Morus boninensis DNA, microsatellite locus Mos0050 40 5.9
34emb|CR593275.1| full-length cDNA clone CS0DD002YB15 of Neuroblas... 40 5.9
35dbj|AK166641.1| Mus musculus 4 cells embryo 4 cells cDNA, RIKEN ... 40 5.9
36gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 5.9
37gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 5.9
38dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
39dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.9
40dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 5.9
41dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
42dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
43dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.9
44gb|AY104312.1| Zea mays PCO074362 mRNA sequence 40 5.9
45emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4,... 40 5.9
46dbj|D45402.1|MZECP Corn mRNA for cysteine proteinase, clone CCP,... 40 5.9 
>dbj|AK071175.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084M11, full
           insert sequence
          Length = 1427

 Score =  341 bits (172), Expect = 1e-90
 Identities = 278/311 (89%), Gaps = 3/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 127 tcgcgcgtggccgtgctcgccttctgcgtcggcgggatctggtcatcctacatcacccag 186
           |||||||||||||||||||| |||||||||| ||||||||||||  | ||||||||||||
Sbjct: 136 tcgcgcgtggccgtgctcgcattctgcgtcgccgggatctggtcggcgtacatcacccag 195

                                                                       
Query: 187 gggatcctccaggagacgctatcgacgaagcgattcgggccagaggagcggcggttcgac 246
           ||  |||||||||| || || ||||||||||| |||||||| |||| |||||||||||||
Sbjct: 196 ggcgtcctccaggaaaccctgtcgacgaagcggttcgggccggaggcgcggcggttcgac 255

                                                                       
Query: 247 cacctcgcgttcctcaacttcgcgcagaacgtggtctgcttcgtctggtccttcataatg 306
           |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 256 cacctcgcgttcatcaacttcgcgcagaacgtcgtctgcttcgtctggtccttcataatg 315

                                                                       
Query: 307 atcaagctgtggtcgggtggtagcag-tcct--gccgggcgggcgcctcttctgaagtac 363
           ||||||||||||||| ||||| | || ||||  || || || ||||| || | |||||||
Sbjct: 316 atcaagctgtggtcgagtggtgggagctcctccgctggccgcgcgccgctgcggaagtac 375

                                                                       
Query: 364 tggggcgtcagcatcaccaacaccatcggcccgaccatggggatcgaggcgcttcagtac 423
           |||||||||||||||||||||||  |||||||| |||||||||||||||||||  ||| |
Sbjct: 376 tggggcgtcagcatcaccaacactgtcggcccggccatggggatcgaggcgctcaagttc 435

                      
Query: 424 atcagctaccc 434
           |||||||||||
Sbjct: 436 atcagctaccc 446
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>dbj|AK060274.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-005-G07, full
           insert sequence
          Length = 1433

 Score =  341 bits (172), Expect = 1e-90
 Identities = 278/311 (89%), Gaps = 3/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 127 tcgcgcgtggccgtgctcgccttctgcgtcggcgggatctggtcatcctacatcacccag 186
           |||||||||||||||||||| |||||||||| ||||||||||||  | ||||||||||||
Sbjct: 135 tcgcgcgtggccgtgctcgcattctgcgtcgccgggatctggtcggcgtacatcacccag 194

                                                                       
Query: 187 gggatcctccaggagacgctatcgacgaagcgattcgggccagaggagcggcggttcgac 246
           ||  |||||||||| || || ||||||||||| |||||||| |||| |||||||| ||||
Sbjct: 195 ggcgtcctccaggaaaccctgtcgacgaagcggttcgggccggaggcgcggcggtccgac 254

                                                                       
Query: 247 cacctcgcgttcctcaacttcgcgcagaacgtggtctgcttcgtctggtccttcataatg 306
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 255 cacctcgcgttcctcaacttcgcgcagaacgtcgtctgcttcgtctggtccttcataatg 314

                                                                       
Query: 307 atcaagctgtggtcgggtggtagcag-tcct--gccgggcgggcgcctcttctgaagtac 363
           ||||||||||||||| ||||| | || ||||  || || || ||||| || | |||||||
Sbjct: 315 atcaagctgtggtcgagtggtgggagctcctccgctggccgcgcgccgctgcggaagtac 374

                                                                       
Query: 364 tggggcgtcagcatcaccaacaccatcggcccgaccatggggatcgaggcgcttcagtac 423
           |||||||||||||||||||||||  |||||||| |||||||||||||||||||  ||| |
Sbjct: 375 tggggcgtcagcatcaccaacactgtcggcccggccatggggatcgaggcgctcaagttc 434

                      
Query: 424 atcagctaccc 434
           |||||||||||
Sbjct: 435 atcagctaccc 445
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  161 bits (81), Expect = 2e-36
 Identities = 93/97 (95%)
 Strand = Plus / Plus

                                                                            
Query: 208      tcgacgaagcgattcgggccagaggagcggcggttcgaccacctcgcgttcctcaacttc 267
                ||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 22920431 tcgacgaagcggttcgggccggaggcgcggcggttcgaccacctcgcgttcctcaacttc 22920490

                                                     
Query: 268      gcgcagaacgtggtctgcttcgtctggtccttcataa 304
                ||||||||||| |||||||||||||||||||||||||
Sbjct: 22920491 gcgcagaacgtcgtctgcttcgtctggtccttcataa 22920527



 Score =  107 bits (54), Expect = 3e-20
 Identities = 72/78 (92%)
 Strand = Plus / Plus

                                                                            
Query: 357      gaagtactggggcgtcagcatcaccaacaccatcggcccgaccatggggatcgaggcgct 416
                ||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||
Sbjct: 22920712 gaagtactggggcgtcagcatcaccaacactgtcggcccggccatggggatcgaggcgct 22920771

                                  
Query: 417      tcagtacatcagctaccc 434
                  ||| ||||||||||||
Sbjct: 22920772 caagttcatcagctaccc 22920789



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                            
Query: 127      tcgcgcgtggccgtgctcgccttctgcgtcggcgggatctggtcatcctacatcacccag 186
                |||||||||||||||||||| |||||||||| ||||||||||||  | ||||||||||||
Sbjct: 22920212 tcgcgcgtggccgtgctcgcattctgcgtcgccgggatctggtcggcgtacatcacccag 22920271

                              
Query: 187      gggatcctccagga 200
                ||  ||||||||||
Sbjct: 22920272 ggcgtcctccagga 22920285



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 101     gcgtcgacggcggcggcagc 120
               ||||||||||||||||||||
Sbjct: 2848265 gcgtcgacggcggcggcagc 2848246
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>dbj|AP003617.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0502H06
          Length = 165630

 Score =  161 bits (81), Expect = 2e-36
 Identities = 93/97 (95%)
 Strand = Plus / Plus

                                                                         
Query: 208   tcgacgaagcgattcgggccagaggagcggcggttcgaccacctcgcgttcctcaacttc 267
             ||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 95253 tcgacgaagcggttcgggccggaggcgcggcggttcgaccacctcgcgttcctcaacttc 95312

                                                  
Query: 268   gcgcagaacgtggtctgcttcgtctggtccttcataa 304
             ||||||||||| |||||||||||||||||||||||||
Sbjct: 95313 gcgcagaacgtcgtctgcttcgtctggtccttcataa 95349



 Score =  107 bits (54), Expect = 3e-20
 Identities = 72/78 (92%)
 Strand = Plus / Plus

                                                                         
Query: 357   gaagtactggggcgtcagcatcaccaacaccatcggcccgaccatggggatcgaggcgct 416
             ||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||
Sbjct: 95534 gaagtactggggcgtcagcatcaccaacactgtcggcccggccatggggatcgaggcgct 95593

                               
Query: 417   tcagtacatcagctaccc 434
               ||| ||||||||||||
Sbjct: 95594 caagttcatcagctaccc 95611



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Plus

                                                                         
Query: 127   tcgcgcgtggccgtgctcgccttctgcgtcggcgggatctggtcatcctacatcacccag 186
             |||||||||||||||||||| |||||||||| ||||||||||||  | ||||||||||||
Sbjct: 95034 tcgcgcgtggccgtgctcgcattctgcgtcgccgggatctggtcggcgtacatcacccag 95093

                           
Query: 187   gggatcctccagga 200
             ||  ||||||||||
Sbjct: 95094 ggcgtcctccagga 95107
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 102     cgtcgacggcggcggcagcctg 123
               ||||||||||||||||||||||
Sbjct: 1658700 cgtcgacggcggcggcagcctg 1658679
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>gb|AY658210.1| Synthetic construct Peudomonas aeruginosa clone FLH044474.01F
           PA4162 gene, partial cds
          Length = 717

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 103 gtcgacggcggcggcagcctgg 124
           ||||||||||||||||||||||
Sbjct: 685 gtcgacggcggcggcagcctgg 706
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 102     cgtcgacggcggcggcagcctg 123
               ||||||||||||||||||||||
Sbjct: 2903699 cgtcgacggcggcggcagcctg 2903678
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 102     cgtcgacggcggcggcagcctg 123
               ||||||||||||||||||||||
Sbjct: 2633785 cgtcgacggcggcggcagcctg 2633764
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>gb|AE004832.1| Pseudomonas aeruginosa PAO1, section 393 of 529 of the complete
            genome
          Length = 10505

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 103  gtcgacggcggcggcagcctgg 124
            ||||||||||||||||||||||
Sbjct: 9639 gtcgacggcggcggcagcctgg 9618
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 102     cgtcgacggcggcggcagcctg 123
               ||||||||||||||||||||||
Sbjct: 2255880 cgtcgacggcggcggcagcctg 2255901
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>ref|XM_464852.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1176

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 96  cccccgcgtcgacggcggcggcagc 120
           ||||||||||| |||||||||||||
Sbjct: 47  cccccgcgtcggcggcggcggcagc 71
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>ref|XM_506764.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1113_G05.32
           mRNA
          Length = 1265

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 96  cccccgcgtcgacggcggcggcagc 120
           ||||||||||| |||||||||||||
Sbjct: 46  cccccgcgtcggcggcggcggcagc 70
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 96      cccccgcgtcgacggcggcggcagc 120
               ||||||||||| |||||||||||||
Sbjct: 8557216 cccccgcgtcggcggcggcggcagc 8557192
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>gb|AF139211.2| Oryza sativa pre-mRNA splicing factor mRNA, complete cds
          Length = 1190

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 96  cccccgcgtcgacggcggcggcagc 120
           ||||||||||| |||||||||||||
Sbjct: 47  cccccgcgtcggcggcggcggcagc 71
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>dbj|AP005510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0009N02
          Length = 121142

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 96    cccccgcgtcgacggcggcggcagc 120
             ||||||||||| |||||||||||||
Sbjct: 26539 cccccgcgtcggcggcggcggcagc 26515
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>dbj|AP004018.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1113_G05
          Length = 131445

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 96     cccccgcgtcgacggcggcggcagc 120
              ||||||||||| |||||||||||||
Sbjct: 106486 cccccgcgtcggcggcggcggcagc 106462
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>dbj|AK099051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151F04, full
           insert sequence
          Length = 1177

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 96  cccccgcgtcgacggcggcggcagc 120
           ||||||||||| |||||||||||||
Sbjct: 47  cccccgcgtcggcggcggcggcagc 71
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>dbj|AK062577.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-D09, full
           insert sequence
          Length = 1265

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 96  cccccgcgtcgacggcggcggcagc 120
           ||||||||||| |||||||||||||
Sbjct: 46  cccccgcgtcggcggcggcggcagc 70
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>emb|AJ550897.1|TRU550897 Takifugu rubripes ptr1 gene for parathyroid hormone receptor 1, exons
             1-13
          Length = 31774

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   gcggcggcagcctggcttcgc 130
             |||||||||||||||||||||
Sbjct: 20968 gcggcggcagcctggcttcgc 20988
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 264     cttcgcgcagaacgtggtct 283
               ||||||||||||||||||||
Sbjct: 1090988 cttcgcgcagaacgtggtct 1090969
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>ref|XM_472784.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1428

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 98  cccgcgtcgacggcggcggc 117
           ||||||||||||||||||||
Sbjct: 122 cccgcgtcgacggcggcggc 141
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>ref|XM_427945.1| PREDICTED: Gallus gallus similar to CG3524-PA (LOC430387), partial
           mRNA
          Length = 869

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 ctcttctgaagtactggggc 369
           ||||||||||||||||||||
Sbjct: 345 ctcttctgaagtactggggc 364
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 412    gcgcttcagtacatcagcta 431
              ||||||||||||||||||||
Sbjct: 387562 gcgcttcagtacatcagcta 387543
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>ref|XM_418587.1| PREDICTED: Gallus gallus similar to CG3524-PA (LOC420485), mRNA
          Length = 8854

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 350  ctcttctgaagtactggggc 369
            ||||||||||||||||||||
Sbjct: 2687 ctcttctgaagtactggggc 2706
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>ref|XM_546147.2| PREDICTED: Canis familiaris similar to KIAA1274 (LOC489029), mRNA
          Length = 2589

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 133  gtggccgtgctcgccttctg 152
            ||||||||||||||||||||
Sbjct: 2038 gtggccgtgctcgccttctg 2057
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>emb|AL035413.19|HS657E11 Human DNA sequence from clone RP4-657E11 on chromosome 1p35.1-36.23
             Contains the 5' end of a novel gene, the C1orf33 gene for
             chromosome 1 open reading frame 33, four novel genes, the 
             AKR7A3 gene for aldo-keto reductase family 7, member A3
             (aflatoxin aldehyde reductase), the  AKR7A2 gene for
             aldo-keto reductase family 7, member A2 (aflatoxin
             aldehyde reductase), the 3' end of the CAPZB gene for
             capping protein (actin filament) muscle Z-line, beta and
             two CpG islands, complete sequence
          Length = 154130

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 395   cgaccatggggatcgaggcg 414
             ||||||||||||||||||||
Sbjct: 45730 cgaccatggggatcgaggcg 45749
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>gb|AC084024.17| Homo sapiens chromosome 8, clone RP11-90P5, complete sequence
          Length = 135404

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 333   tcctgccgggcgggcgcctcttctgaag 360
             |||| |||||||||||||||||| ||||
Sbjct: 61887 tcctcccgggcgggcgcctcttccgaag 61860
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 101     gcgtcgacggcggcggcagc 120
               ||||||||||||||||||||
Sbjct: 1371427 gcgtcgacggcggcggcagc 1371408
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>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16
          Length = 349442

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 101   gcgtcgacggcggcggcagcctgg 124
             |||| |||||||||||||||||||
Sbjct: 18564 gcgtggacggcggcggcagcctgg 18541
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>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14
          Length = 348525

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 101    gcgtcgacggcggcggcagcctgg 124
              |||| |||||||||||||||||||
Sbjct: 216752 gcgtggacggcggcggcagcctgg 216775
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>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12
          Length = 343243

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 101    gcgtcgacggcggcggcagcctgg 124
              |||| |||||||||||||||||||
Sbjct: 242483 gcgtggacggcggcggcagcctgg 242506
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>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14,
             complete sequence
          Length = 139418

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    cccgcgtcgacggcggcggc 117
             ||||||||||||||||||||
Sbjct: 92958 cccgcgtcgacggcggcggc 92939
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>dbj|AB199902.1| Morus boninensis DNA, microsatellite locus Mos0050
          Length = 187

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 145 gccttctgcgtcggcgggatctggtcatccta 176
           ||||||||||||| |||||| |||||| ||||
Sbjct: 124 gccttctgcgtcgccgggatttggtcagccta 93
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>emb|CR593275.1| full-length cDNA clone CS0DD002YB15 of Neuroblastoma Cot
           50-normalized of Homo sapiens (human)
          Length = 1568

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 333 tcctgccgggcgggcgcctcttctgaag 360
           |||| |||||||||||||||||| ||||
Sbjct: 487 tcctcccgggcgggcgcctcttccgaag 514
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>dbj|AK166641.1| Mus musculus 4 cells embryo 4 cells cDNA, RIKEN full-length
           enriched library, clone:I0C0044E12 product:choline
           kinase alpha, full insert sequence
          Length = 3603

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 101 gcgtcgacggcggcggcagc 120
           ||||||||||||||||||||
Sbjct: 426 gcgtcgacggcggcggcagc 407
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 366     gggcgtcagcatcaccaacaccatcggc 393
               |||||||| ||||||| |||||||||||
Sbjct: 2152456 gggcgtcaacatcaccgacaccatcggc 2152429
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 258     cctcaacttcgcgcagaacg 277
               ||||||||||||||||||||
Sbjct: 2140443 cctcaacttcgcgcagaacg 2140462
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 98       cccgcgtcgacggcggcggc 117
                ||||||||||||||||||||
Sbjct: 23202766 cccgcgtcgacggcggcggc 23202747
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 98      cccgcgtcgacggcggcggc 117
               ||||||||||||||||||||
Sbjct: 2277524 cccgcgtcgacggcggcggc 2277543
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 11      ccctcgccggcgaaggccac 30
               ||||||||||||||||||||
Sbjct: 1771900 ccctcgccggcgaaggccac 1771919
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>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0085L11
          Length = 148142

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   gcgtcgacggcggcggcagc 120
             ||||||||||||||||||||
Sbjct: 91746 gcgtcgacggcggcggcagc 91727
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>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0046E09
          Length = 146776

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 101  gcgtcgacggcggcggcagc 120
            ||||||||||||||||||||
Sbjct: 8411 gcgtcgacggcggcggcagc 8392
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 11      ccctcgccggcgaaggccac 30
               ||||||||||||||||||||
Sbjct: 3768503 ccctcgccggcgaaggccac 3768522
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>gb|AY104312.1| Zea mays PCO074362 mRNA sequence
          Length = 2610

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 99  ccgcgtcgacggcggcggca 118
           ||||||||||||||||||||
Sbjct: 154 ccgcgtcgacggcggcggca 135
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>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02,
             complete sequence
          Length = 121337

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    cccgcgtcgacggcggcggc 117
             ||||||||||||||||||||
Sbjct: 40919 cccgcgtcgacggcggcggc 40900
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>dbj|D45402.1|MZECP Corn mRNA for cysteine proteinase, clone CCP, complete cds
          Length = 1311

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 99  ccgcgtcgacggcggcggca 118
           ||||||||||||||||||||
Sbjct: 93  ccgcgtcgacggcggcggca 74


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,592,849
Number of Sequences: 3902068
Number of extensions: 2592849
Number of successful extensions: 54107
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52771
Number of HSP's gapped (non-prelim): 1336
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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