ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart58g02 |
|---|---|
| Clone Library Name | barley_pub |
>TRME_CHLCV (Q821L2) tRNA modification GTPase trmE| Length = 443 Score = 29.3 bits (64), Expect = 2.3 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +2 Query: 47 PPISLPSILSKRPSKWLRRRSRMAWPP 127 PP SLP IL ++PS L +S +A PP Sbjct: 307 PPPSLPEILFQKPSLLLWNKSDLASPP 333
>SELA_PSEPK (Q88QJ8) L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1)| (Cysteinyl-tRNA(Sec) selenium transferase) (Selenocysteine synthase) (Selenocysteinyl-tRNA(Sec) synthase) Length = 475 Score = 28.9 bits (63), Expect = 3.0 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = -1 Query: 165 TLHRHQ--LRLTDRHGGHAILLRLRNHFDGLFESMDGREIG 49 TL RH L L DRHG A+L LR D L E E+G Sbjct: 17 TLLRHPACLPLIDRHGRDAVLNTLRQLLDDLREPARNGELG 57
>CYDB_ECOLI (P0ABK2) Cytochrome d ubiquinol oxidase subunit 2 (EC 1.10.3.-)| (Cytochrome d ubiquinol oxidase subunit II) (Cytochrome bd-I oxidase subunit II) Length = 379 Score = 28.9 bits (63), Expect = 3.0 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = -2 Query: 152 ISCALLTAMVAT-PFCFASATILMASLRVWMA 60 ++C +LTA +A PF S+T++ ASL +W A Sbjct: 299 LACIILTAGIAMFPFVMPSSTMMNASLTMWDA 330
>CYDB_ECOL6 (P0ABK3) Cytochrome d ubiquinol oxidase subunit 2 (EC 1.10.3.-)| (Cytochrome d ubiquinol oxidase subunit II) (Cytochrome bd-I oxidase subunit II) Length = 379 Score = 28.9 bits (63), Expect = 3.0 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = -2 Query: 152 ISCALLTAMVAT-PFCFASATILMASLRVWMA 60 ++C +LTA +A PF S+T++ ASL +W A Sbjct: 299 LACIILTAGIAMFPFVMPSSTMMNASLTMWDA 330
>CYDB_ECO57 (P0ABK4) Cytochrome d ubiquinol oxidase subunit 2 (EC 1.10.3.-)| (Cytochrome d ubiquinol oxidase subunit II) (Cytochrome bd-I oxidase subunit II) Length = 379 Score = 28.9 bits (63), Expect = 3.0 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = -2 Query: 152 ISCALLTAMVAT-PFCFASATILMASLRVWMA 60 ++C +LTA +A PF S+T++ ASL +W A Sbjct: 299 LACIILTAGIAMFPFVMPSSTMMNASLTMWDA 330
>CL190_DROME (Q9VJE5) Restin homolog (Cytoplasmic linker protein 190)| (Microtubule-binding protein 190) (d-CLIP-190) Length = 1690 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +1 Query: 112 NGVATMAVSKAQLMSVKRREPTLVSPVEATP 204 N +AT A S+ ++ + +R+ T V P+ ATP Sbjct: 333 NSIATTATSRMRMNAQQRKSSTPVKPILATP 363
>HCBT1_DIACA (O24645) Anthranilate N-benzoyltransferase protein 1 (EC 2.3.1.144)| (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 1) Length = 445 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = +1 Query: 151 MSVKRREPTLVSPVEATPIGEQYYLSNLDQNIAVIVQTVY 270 MS++ ++ T+V P E TP + +LSN+D +I++T Y Sbjct: 1 MSIQIKQSTMVRPAEETP-NKSLWLSNID----MILRTPY 35
>HRP3_PLAFS (P14586) Histidine-rich protein| Length = 82 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -1 Query: 159 HRHQLRLTDRHGGHAILLRLRNHFDG 82 HRHQ+ +RH H ILL L N G Sbjct: 36 HRHQILHQNRHQIHQILLSLNNKIMG 61
>SOX13_HUMAN (Q9UN79) SOX-13 protein (Type 1 diabetes autoantigen ICA12) (Islet| cell antigen 12) Length = 889 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/68 (29%), Positives = 29/68 (42%) Frame = +1 Query: 100 EAKQNGVATMAVSKAQLMSVKRREPTLVSPVEATPIGEQYYLSNLDQNIAVIVQTVYCFK 279 +A+Q+ V + Q+ S P A P+ E Y +LD N+ VIV T C Sbjct: 505 DARQSYVIPPQAGQVQMSSSDVLYPRAAGMPLAQPLVEHYVPRSLDPNMPVIVNT--CSL 562 Query: 280 CPSGRGNE 303 G G + Sbjct: 563 REEGEGTD 570
>RL15_PORGI (Q7MTN2) 50S ribosomal protein L15| Length = 148 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +1 Query: 40 FKPTNLSAIHTLKEAIKMVAEAKQNGVATMAVSKAQLMSV 159 +KP NLS + TL EA + + ++ +A VS+ L+ + Sbjct: 74 YKPINLSVLQTLSEANSLTKISVEDLIAAGLVSRNSLVKI 113
>LIRP1_ORYSA (Q03200) Light-regulated protein precursor| Length = 128 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 5/43 (11%) Frame = +1 Query: 85 IKMVAEAKQNGVATMAVSKAQLMSVKR-----REPTLVSPVEA 198 ++M EAK + A +AVS+A V R EPT V P EA Sbjct: 74 VQMYPEAKLSSSAAVAVSRAAAEEVDRDYLSYDEPTTVFPEEA 116
>AVRC_PSESG (P13836) Avirulence C protein| Length = 352 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = -1 Query: 120 HAILLRLRNHFDGLFESMDGREIGGFKER 34 H+++ R+RNH D E +G +GG + + Sbjct: 164 HSVIERVRNHSDANSEIYEGEYLGGIETK 192
>ODO1_COXBU (P51056) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 934 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Frame = +1 Query: 67 HTLKEAIKMVAEAKQNGVATMAVSKAQLMSVKR---REPTLVSPVEATPIGEQ 216 H++ E + NG +T +S A + R R+P +SP TP EQ Sbjct: 35 HSVNEEWRSYFRTLTNGASTPDISHATIREEFRELARKPRSISPTAITPAAEQ 87 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.132 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,018,907 Number of Sequences: 219361 Number of extensions: 707170 Number of successful extensions: 2075 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2057 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2075 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
