ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart58c11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472718.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 918 Score = 151 bits (76), Expect = 2e-33 Identities = 171/203 (84%) Strand = Plus / Plus Query: 208 ctcaagccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgac 267 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | || Sbjct: 124 ctcaagccggccggggggatcacgccggcgatgttcggcgcgccggtgagcgagaaggag 183 Query: 268 gcccaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatgaagganatg 327 || ||||||||||||| |||||| | | | | || || |||||| | || || ||| Sbjct: 184 gcggaggatctgagcaagagtgaacgaaaattttgctcgggctcaaagttaaaagaaatg 243 Query: 328 actgggagtgggatatttgctgaaaagagtgagaatagtgattcagagtcttcaaatcct 387 ||||| ||||||||||| ||||| || ||||| ||| |||||||||| ||||||||||| Sbjct: 244 actggaagtgggatattcgctgagaatagtgaaaatgatgattcagaggcttcaaatcct 303 Query: 388 gcaaacagaacttctgtgaggat 410 ||||||| ||||||||| ||||| Sbjct: 304 gcaaacaaaacttctgtaaggat 326 Score = 79.8 bits (40), Expect = 6e-12 Identities = 63/71 (88%) Strand = Plus / Plus Query: 91 atggagagggcgacgccngtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150 |||||||||||| ||| ||| ||| ||||||||||||||||| ||||||||||||||| Sbjct: 1 atggagagggcggtgccggtgaggaagccgcacacctcgacggcggacctgctcacgtgg 60 Query: 151 tcggccacggg 161 ||||| ||||| Sbjct: 61 tcggcgacggg 71
>tpg|BK001566.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) HN1-like protein isoform 1 mRNA, complete cds Length = 1262 Score = 151 bits (76), Expect = 2e-33 Identities = 171/203 (84%) Strand = Plus / Plus Query: 208 ctcaagccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgac 267 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | || Sbjct: 221 ctcaagccggccggggggatcacgccggcgatgttcggcgcgccggtgagcgagaaggag 280 Query: 268 gcccaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatgaagganatg 327 || ||||||||||||| |||||| | | | | || || |||||| | || || ||| Sbjct: 281 gcggaggatctgagcaagagtgaacgaaaattttgctcgggctcaaagttaaaagaaatg 340 Query: 328 actgggagtgggatatttgctgaaaagagtgagaatagtgattcagagtcttcaaatcct 387 ||||| ||||||||||| ||||| || ||||| ||| |||||||||| ||||||||||| Sbjct: 341 actggaagtgggatattcgctgagaatagtgaaaatgatgattcagaggcttcaaatcct 400 Query: 388 gcaaacagaacttctgtgaggat 410 ||||||| ||||||||| ||||| Sbjct: 401 gcaaacaaaacttctgtaaggat 423 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 118 ccgcacacctcgacggccgacctgctcacgtggtcggc 155 |||||||||||||||| |||||||||||||||||||| Sbjct: 125 ccgcacacctcgacgggggacctgctcacgtggtcggc 162
>dbj|AK103788.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145I18, full insert sequence Length = 1373 Score = 151 bits (76), Expect = 2e-33 Identities = 171/203 (84%) Strand = Plus / Plus Query: 208 ctcaagccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgac 267 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | || Sbjct: 221 ctcaagccggccggggggatcacgccggcgatgttcggcgcgccggtgagcgagaaggag 280 Query: 268 gcccaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatgaagganatg 327 || ||||||||||||| |||||| | | | | || || |||||| | || || ||| Sbjct: 281 gcggaggatctgagcaagagtgaacgaaaattttgctcgggctcaaagttaaaagaaatg 340 Query: 328 actgggagtgggatatttgctgaaaagagtgagaatagtgattcagagtcttcaaatcct 387 ||||| ||||||||||| ||||| || ||||| ||| |||||||||| ||||||||||| Sbjct: 341 actggaagtgggatattcgctgagaatagtgaaaatgatgattcagaggcttcaaatcct 400 Query: 388 gcaaacagaacttctgtgaggat 410 ||||||| ||||||||| ||||| Sbjct: 401 gcaaacaaaacttctgtaaggat 423 Score = 91.7 bits (46), Expect = 2e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 85 ggagcaatggagagggcgacgccngtgcggagcccgcacacctcgacggccgacctgctc 144 |||||||||||||||||| ||| ||| ||| ||||||||||||||||| ||||||||| Sbjct: 92 ggagcaatggagagggcggtgccggtgaggaagccgcacacctcgacggcggacctgctc 151 Query: 145 acgtggtcggccacggg 161 ||||||||||| ||||| Sbjct: 152 acgtggtcggcgacggg 168
>dbj|AK101129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025P19, full insert sequence Length = 1262 Score = 151 bits (76), Expect = 2e-33 Identities = 171/203 (84%) Strand = Plus / Plus Query: 208 ctcaagccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgac 267 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | || Sbjct: 221 ctcaagccggccggggggatcacgccggcgatgttcggcgcgccggtgagcgagaaggag 280 Query: 268 gcccaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatgaagganatg 327 || ||||||||||||| |||||| | | | | || || |||||| | || || ||| Sbjct: 281 gcggaggatctgagcaagagtgaacgaaaattttgctcgggctcaaagttaaaagaaatg 340 Query: 328 actgggagtgggatatttgctgaaaagagtgagaatagtgattcagagtcttcaaatcct 387 ||||| ||||||||||| ||||| || ||||| ||| |||||||||| ||||||||||| Sbjct: 341 actggaagtgggatattcgctgagaatagtgaaaatgatgattcagaggcttcaaatcct 400 Query: 388 gcaaacagaacttctgtgaggat 410 ||||||| ||||||||| ||||| Sbjct: 401 gcaaacaaaacttctgtaaggat 423 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 118 ccgcacacctcgacggccgacctgctcacgtggtcggc 155 |||||||||||||||| |||||||||||||||||||| Sbjct: 125 ccgcacacctcgacgggggacctgctcacgtggtcggc 162
>gb|AY596573.1| Saccharum officinarum clone SCCCLR1C01D11, complete sequence Length = 1372 Score = 119 bits (60), Expect = 7e-24 Identities = 155/187 (82%) Strand = Plus / Plus Query: 208 ctcaagccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgac 267 ||||||||||| | |||||| |||||||| ||||||||||||||||| | |||||| || Sbjct: 268 ctcaagccggccgcggggattacgccggcgatgttcggcgcgccggtcaccgagcaggag 327 Query: 268 gcccaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatgaagganatg 327 ||| ||||||||||||| |||||||||| | | || || |||||| |||| || ||| Sbjct: 328 gccgaggatctgagcaagagtgaaaggaaattttgctctggctcaaagttgaaagaaatg 387 Query: 328 actgggagtgggatatttgctgaaaagagtgagaatagtgattcagagtcttcaaatcct 387 | ||| |||||||| || |||| |||||||| ||| ||||||||||| |||| |||||| Sbjct: 388 agtggaagtgggatcttcactgagaagagtgaaaatggtgattcagaggcttcgaatcct 447 Query: 388 gcaaaca 394 || |||| Sbjct: 448 gctaaca 454 Score = 58.0 bits (29), Expect = 2e-05 Identities = 64/76 (84%) Strand = Plus / Plus Query: 86 gagcaatggagagggcgacgccngtgcggagcccgcacacctcgacggccgacctgctca 145 ||||||||||||||||| ||| || |||| ||||||||| ||||||||||| ||| Sbjct: 149 gagcaatggagagggcggtgccggttcggaagccgcacaccaacacggccgaccttctct 208 Query: 146 cgtggtcggccacggg 161 | |||||||||||||| Sbjct: 209 cctggtcggccacggg 224
>gb|AY107167.1| Zea mays PCO149856 mRNA sequence Length = 1497 Score = 119 bits (60), Expect = 7e-24 Identities = 155/187 (82%) Strand = Plus / Plus Query: 208 ctcaagccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgac 267 ||||||||||| | ||||| ||||| || ||||||||||||||||| | |||||| || Sbjct: 251 ctcaagccggccgccgggattacgcctgcgatgttcggcgcgccggtcaccgagcaggag 310 Query: 268 gcccaggatctgagcaacagtgaaaggagactgatgtccggttcaaagatgaagganatg 327 ||| ||||||||||||| |||||||||| | | ||||| || ||| |||| || ||| Sbjct: 311 gccgaggatctgagcaagagtgaaaggaaattttgctccggatcgaagttgaaagagatg 370 Query: 328 actgggagtgggatatttgctgaaaagagtgagaatagtgattcagagtcttcaaatcct 387 | |||||||||||| || ||||| |||||||| ||| |||| |||||| ||||||||||| Sbjct: 371 agtgggagtgggattttcgctgagaagagtgaaaatggtgactcagaggcttcaaatcct 430 Query: 388 gcaaaca 394 || |||| Sbjct: 431 gctaaca 437 Score = 52.0 bits (26), Expect = 0.001 Identities = 61/73 (83%) Strand = Plus / Plus Query: 88 gcaatggagagggcgacgccngtgcggagcccgcacacctcgacggccgacctgctcacg 147 ||||||||||||||| ||| || |||| ||||||||| ||||||||||| ||| | Sbjct: 134 gcaatggagagggcggtgccggttcggaagccgcacaccagcacggccgaccttctctcc 193 Query: 148 tggtcggccacgg 160 ||||||||||||| Sbjct: 194 tggtcggccacgg 206
>emb|AL731584.3|OSJN00224 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006M15, complete sequence Length = 143109 Score = 91.7 bits (46), Expect = 2e-15 Identities = 69/77 (89%) Strand = Plus / Minus Query: 85 ggagcaatggagagggcgacgccngtgcggagcccgcacacctcgacggccgacctgctc 144 |||||||||||||||||| ||| ||| ||| ||||||||||||||||| ||||||||| Sbjct: 110532 ggagcaatggagagggcggtgccggtgaggaagccgcacacctcgacggcggacctgctc 110473 Query: 145 acgtggtcggccacggg 161 ||||||||||| ||||| Sbjct: 110472 acgtggtcggcgacggg 110456 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 325 atgactgggagtgggatatttgctgaaaagagtgagaatagtgattcagagtcttcaaat 384 |||||||| ||||||||||| ||||| || ||||| ||| |||||||||| |||||||| Sbjct: 109055 atgactggaagtgggatattcgctgagaatagtgaaaatgatgattcagaggcttcaaat 108996 Query: 385 cctgcaaacagaacttctgtgaggat 410 |||||||||| ||||||||| ||||| Sbjct: 108995 cctgcaaacaaaacttctgtaaggat 108970 Score = 89.7 bits (45), Expect = 7e-15 Identities = 66/73 (90%) Strand = Plus / Minus Query: 212 agccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgacgccc 271 ||||||| ||||||||||||||||| |||||||||||||||||||||||| | || || Sbjct: 110262 agccggccggggggatcacgccggcgatgttcggcgcgccggtgagcgagaaggaggcgg 110203 Query: 272 aggatctgagcaa 284 ||||||||||||| Sbjct: 110202 aggatctgagcaa 110190
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 91.7 bits (46), Expect = 2e-15 Identities = 69/77 (89%) Strand = Plus / Minus Query: 85 ggagcaatggagagggcgacgccngtgcggagcccgcacacctcgacggccgacctgctc 144 |||||||||||||||||| ||| ||| ||| ||||||||||||||||| ||||||||| Sbjct: 22773336 ggagcaatggagagggcggtgccggtgaggaagccgcacacctcgacggcggacctgctc 22773277 Query: 145 acgtggtcggccacggg 161 ||||||||||| ||||| Sbjct: 22773276 acgtggtcggcgacggg 22773260 Score = 91.7 bits (46), Expect = 2e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 325 atgactgggagtgggatatttgctgaaaagagtgagaatagtgattcagagtcttcaaat 384 |||||||| ||||||||||| ||||| || ||||| ||| |||||||||| |||||||| Sbjct: 22771859 atgactggaagtgggatattcgctgagaatagtgaaaatgatgattcagaggcttcaaat 22771800 Query: 385 cctgcaaacagaacttctgtgaggat 410 |||||||||| ||||||||| ||||| Sbjct: 22771799 cctgcaaacaaaacttctgtaaggat 22771774 Score = 89.7 bits (45), Expect = 7e-15 Identities = 66/73 (90%) Strand = Plus / Minus Query: 212 agccggctggggggatcacgccggccatgttcggcgcgccggtgagcgagcacgacgccc 271 ||||||| ||||||||||||||||| |||||||||||||||||||||||| | || || Sbjct: 22773066 agccggccggggggatcacgccggcgatgttcggcgcgccggtgagcgagaaggaggcgg 22773007 Query: 272 aggatctgagcaa 284 ||||||||||||| Sbjct: 22773006 aggatctgagcaa 22772994
>ref|XM_466380.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1150 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 208 ctcaagccggctggggggatcacgccggccatgttcggcgcgccggtga 256 ||||||||||| || |||||||||||||| |||||||| |||||||||| Sbjct: 189 ctcaagccggccggtgggatcacgccggcgatgttcggagcgccggtga 237 Score = 50.1 bits (25), Expect = 0.006 Identities = 33/36 (91%) Strand = Plus / Plus Query: 310 tcaaagatgaagganatgactgggagtgggatattt 345 |||||||||||||| ||||| |||||||| |||||| Sbjct: 285 tcaaagatgaaggaaatgaccgggagtggaatattt 320 Score = 50.1 bits (25), Expect = 0.006 Identities = 54/64 (84%) Strand = Plus / Plus Query: 91 atggagagggcgacgccngtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150 |||||||||||| ||| ||||||| ||||| |||||||||||| |||||||| ||| Sbjct: 57 atggagagggcggtgccggtgcggaagacgcacgcctcgacggccggcctgctcagctgg 116 Query: 151 tcgg 154 |||| Sbjct: 117 tcgg 120
>dbj|AK059246.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G05, full insert sequence Length = 1150 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 208 ctcaagccggctggggggatcacgccggccatgttcggcgcgccggtga 256 ||||||||||| || |||||||||||||| |||||||| |||||||||| Sbjct: 189 ctcaagccggccggtgggatcacgccggcgatgttcggagcgccggtga 237 Score = 50.1 bits (25), Expect = 0.006 Identities = 33/36 (91%) Strand = Plus / Plus Query: 310 tcaaagatgaagganatgactgggagtgggatattt 345 |||||||||||||| ||||| |||||||| |||||| Sbjct: 285 tcaaagatgaaggaaatgaccgggagtggaatattt 320 Score = 50.1 bits (25), Expect = 0.006 Identities = 54/64 (84%) Strand = Plus / Plus Query: 91 atggagagggcgacgccngtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150 |||||||||||| ||| ||||||| ||||| |||||||||||| |||||||| ||| Sbjct: 57 atggagagggcggtgccggtgcggaagacgcacgcctcgacggccggcctgctcagctgg 116 Query: 151 tcgg 154 |||| Sbjct: 117 tcgg 120
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 212 agccggctggggggatcacgccggccatgttcggcgcgccggtga 256 ||||||| || |||||||||||||| |||||||| |||||||||| Sbjct: 22065976 agccggccggtgggatcacgccggcgatgttcggagcgccggtga 22065932 Score = 50.1 bits (25), Expect = 0.006 Identities = 54/64 (84%) Strand = Plus / Minus Query: 91 atggagagggcgacgccngtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150 |||||||||||| ||| ||||||| ||||| |||||||||||| |||||||| ||| Sbjct: 22066221 atggagagggcggtgccggtgcggaagacgcacgcctcgacggccggcctgctcagctgg 22066162 Query: 151 tcgg 154 |||| Sbjct: 22066161 tcgg 22066158 Score = 50.1 bits (25), Expect = 0.006 Identities = 33/36 (91%) Strand = Plus / Minus Query: 310 tcaaagatgaagganatgactgggagtgggatattt 345 |||||||||||||| ||||| |||||||| |||||| Sbjct: 22064843 tcaaagatgaaggaaatgaccgggagtggaatattt 22064808 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 240 gttcggcgcgccggtgagcgag 261 |||||||||||||||||||||| Sbjct: 31843412 gttcggcgcgccggtgagcgag 31843433
>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0703B01 Length = 137445 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 212 agccggctggggggatcacgccggccatgttcggcgcgccggtga 256 ||||||| || |||||||||||||| |||||||| |||||||||| Sbjct: 39875 agccggccggtgggatcacgccggcgatgttcggagcgccggtga 39831 Score = 50.1 bits (25), Expect = 0.006 Identities = 54/64 (84%) Strand = Plus / Minus Query: 91 atggagagggcgacgccngtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150 |||||||||||| ||| ||||||| ||||| |||||||||||| |||||||| ||| Sbjct: 40120 atggagagggcggtgccggtgcggaagacgcacgcctcgacggccggcctgctcagctgg 40061 Query: 151 tcgg 154 |||| Sbjct: 40060 tcgg 40057 Score = 50.1 bits (25), Expect = 0.006 Identities = 33/36 (91%) Strand = Plus / Minus Query: 310 tcaaagatgaagganatgactgggagtgggatattt 345 |||||||||||||| ||||| |||||||| |||||| Sbjct: 38742 tcaaagatgaaggaaatgaccgggagtggaatattt 38707
>gb|AY596580.1| Saccharum officinarum clone SCCCCL3120B06, complete sequence Length = 1308 Score = 50.1 bits (25), Expect = 0.006 Identities = 51/60 (85%) Strand = Plus / Minus Query: 91 atggagagggcgacgccngtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150 |||||| ||||| |||| ||| ||||| | |||||||| ||||||||||| ||| ||||| Sbjct: 1218 atggagcgggcggcgccggtgaggagctcccacacctccacggccgacctactcgcgtgg 1159
>gb|AY596563.1| Saccharum officinarum clone SCJLLR2013G10, complete sequence Length = 1194 Score = 50.1 bits (25), Expect = 0.006 Identities = 51/60 (85%) Strand = Plus / Plus Query: 91 atggagagggcgacgccngtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150 |||||||||||| | || ||| |||| | |||||||||||||||| ||||||| ||||| Sbjct: 103 atggagagggcggcccccgtgaggagttcccacacctcgacggccggcctgctcgcgtgg 162
>gb|AY105912.1| Zea mays PCO095569 mRNA sequence Length = 1283 Score = 50.1 bits (25), Expect = 0.006 Identities = 51/60 (85%) Strand = Plus / Plus Query: 91 atggagagggcgacgccngtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150 |||||| ||||| |||| ||| ||||| | |||||||| ||||||||||| ||| ||||| Sbjct: 132 atggagcgggcggcgccggtgaggagctcccacacctccacggccgacctactcgcgtgg 191
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 46.1 bits (23), Expect = 0.089 Identities = 23/23 (100%) Strand = Plus / Plus Query: 243 cggcgcgccggtgagcgagcacg 265 ||||||||||||||||||||||| Sbjct: 908311 cggcgcgccggtgagcgagcacg 908333
>ref|XM_506983.1| PREDICTED Oryza sativa (japonica cultivar-group), P0627E03.37-2 mRNA Length = 1129 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 240 gttcggcgcgccggtgagcgag 261 |||||||||||||||||||||| Sbjct: 344 gttcggcgcgccggtgagcgag 323
>ref|XM_467873.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1127 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 240 gttcggcgcgccggtgagcgag 261 |||||||||||||||||||||| Sbjct: 342 gttcggcgcgccggtgagcgag 321
>ref|XM_467872.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1110 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 240 gttcggcgcgccggtgagcgag 261 |||||||||||||||||||||| Sbjct: 343 gttcggcgcgccggtgagcgag 322
>ref|XM_479197.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1305 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 121 cacacctcgacggccgacctgctcacgtgg 150 ||||| ||||||||||||||||| |||||| Sbjct: 210 cacacgtcgacggccgacctgctgacgtgg 239
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 121 cacacctcgacggccgacctgctcacgtgg 150 ||||| ||||||||||||||||| |||||| Sbjct: 25753964 cacacgtcgacggccgacctgctgacgtgg 25753935
>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0471A11 Length = 157740 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 240 gttcggcgcgccggtgagcgag 261 |||||||||||||||||||||| Sbjct: 4413 gttcggcgcgccggtgagcgag 4434
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0627E03 Length = 159861 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 240 gttcggcgcgccggtgagcgag 261 |||||||||||||||||||||| Sbjct: 139210 gttcggcgcgccggtgagcgag 139231
>dbj|AK119695.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-C06, full insert sequence Length = 1110 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 240 gttcggcgcgccggtgagcgag 261 |||||||||||||||||||||| Sbjct: 343 gttcggcgcgccggtgagcgag 322
>dbj|AP004341.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524E08 Length = 154696 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Minus Query: 121 cacacctcgacggccgacctgctcacgtgg 150 ||||| ||||||||||||||||| |||||| Sbjct: 71126 cacacgtcgacggccgacctgctgacgtgg 71097
>dbj|AK101655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057F02, full insert sequence Length = 1128 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 240 gttcggcgcgccggtgagcgag 261 |||||||||||||||||||||| Sbjct: 344 gttcggcgcgccggtgagcgag 323
>dbj|AK063642.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-G12, full insert sequence Length = 1305 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 121 cacacctcgacggccgacctgctcacgtgg 150 ||||| ||||||||||||||||| |||||| Sbjct: 210 cacacgtcgacggccgacctgctgacgtgg 239
>dbj|AK063454.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G05, full insert sequence Length = 1127 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 240 gttcggcgcgccggtgagcgag 261 |||||||||||||||||||||| Sbjct: 342 gttcggcgcgccggtgagcgag 321
>gb|AE005704.1| Caulobacter crescentus CB15 section 30 of 359 of the complete genome Length = 9704 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 228 cacgccggccatgttcggcgcgccggtga 256 |||||||||||| ||||||||||||||| Sbjct: 911 cacgccggccattgtcggcgcgccggtga 883
>gb|AC154669.2| Mus musculus BAC clone RP24-289P23 from 14, complete sequence Length = 149684 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 390 aaacagaacttctgtgaggat 410 ||||||||||||||||||||| Sbjct: 8376 aaacagaacttctgtgaggat 8396
>gb|AY106079.1| Zea mays PCO068745 mRNA sequence Length = 938 Score = 42.1 bits (21), Expect = 1.4 Identities = 50/60 (83%) Strand = Plus / Plus Query: 91 atggagagggcgacgccngtgcggagcccgcacacctcgacggccgacctgctcacgtgg 150 |||||||| ||| | || ||| ||||| | |||||||||||||| | ||||||| ||||| Sbjct: 118 atggagagagcggcccccgtgaggagctcccacacctcgacggctggcctgctcgcgtgg 177
>gb|AC154690.3| Mus musculus BAC clone RP24-331B7 from chromosome 14, complete sequence Length = 181879 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 aaacagaacttctgtgaggat 410 ||||||||||||||||||||| Sbjct: 36855 aaacagaacttctgtgaggat 36835
>gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genomic sequence, complete sequence Length = 137709 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 cacacctcgacggccgacct 140 |||||||||||||||||||| Sbjct: 38263 cacacctcgacggccgacct 38244
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cacacctcgacggccgacct 140 |||||||||||||||||||| Sbjct: 15299085 cacacctcgacggccgacct 15299104
>gb|AC158549.8| Mus musculus chromosome 19, clone RP24-216K4, complete sequence Length = 195500 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 266 acgcccaggatctgagcaacagtg 289 |||||||||||||||||| ||||| Sbjct: 33701 acgcccaggatctgagcatcagtg 33678
>emb|Z70756.1|CET06E4 Caenorhabditis elegans Cosmid T06E4, complete sequence Length = 38773 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 tgggatatttgctgaaaaga 355 |||||||||||||||||||| Sbjct: 37634 tgggatatttgctgaaaaga 37653
>gb|AC166553.2| Nectria haematococca clone JGIAYWI-9O2, complete sequence Length = 38247 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 agcagcagcagcacctcgag 20 |||||||||||||||||||| Sbjct: 24569 agcagcagcagcacctcgag 24550
>gb|AC146852.15| Medicago truncatula clone mth2-58k21, complete sequence Length = 145314 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 agcagcagcagcacctcgag 20 |||||||||||||||||||| Sbjct: 47363 agcagcagcagcacctcgag 47382
>gb|AC135320.6| Medicago truncatula clone mth2-28e9, complete sequence Length = 108644 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 agcagcagcagcacctcgag 20 |||||||||||||||||||| Sbjct: 43548 agcagcagcagcacctcgag 43529
>emb|AL109800.25|HSDA64P14 Human DNA sequence from clone RP6-64P14 on chromosome Xq24-25, complete sequence Length = 163764 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 aggatctgagcaacagtgaa 291 |||||||||||||||||||| Sbjct: 143257 aggatctgagcaacagtgaa 143238
>emb|AL162756.2|NMA5Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 5/7 Length = 329861 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 tgggatatttgctgaaaaga 355 |||||||||||||||||||| Sbjct: 67621 tgggatatttgctgaaaaga 67640
>gb|DP000034.1| Atelerix albiventris target 116 genomic scaffold Length = 230282 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 ctgaaaagagtgagaatagtgatt 370 ||||||||||| |||||||||||| Sbjct: 223226 ctgaaaagagtcagaatagtgatt 223203
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cacacctcgacggccgacct 140 |||||||||||||||||||| Sbjct: 15293619 cacacctcgacggccgacct 15293638
>gb|AC116849.11| Mus musculus chromosome 19, clone RP24-395F1, complete sequence Length = 168486 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 266 acgcccaggatctgagcaacagtg 289 |||||||||||||||||| ||||| Sbjct: 151134 acgcccaggatctgagcatcagtg 151111
>dbj|AK101680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058I20, full insert sequence Length = 1135 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cacacctcgacggccgacct 140 |||||||||||||||||||| Sbjct: 70 cacacctcgacggccgacct 89
>dbj|AK068724.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161E13, full insert sequence Length = 1181 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cacacctcgacggccgacct 140 |||||||||||||||||||| Sbjct: 73 cacacctcgacggccgacct 92
>dbj|AK060532.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-A03, full insert sequence Length = 1307 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cacacctcgacggccgacct 140 |||||||||||||||||||| Sbjct: 91 cacacctcgacggccgacct 110 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,895,988 Number of Sequences: 3902068 Number of extensions: 2895988 Number of successful extensions: 54663 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54416 Number of HSP's gapped (non-prelim): 247 length of query: 410 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 388 effective length of database: 17,147,199,772 effective search space: 6653113511536 effective search space used: 6653113511536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
