ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart57g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CTN2_MOUSE (Q61301) Alpha-2 catenin (Alpha-catenin-related prote... 30 5.3
2CTN2_HUMAN (P26232) Alpha-2 catenin (Alpha-catenin-related prote... 29 6.9
3CTN2_CHICK (P30997) Alpha-2 catenin (Alpha N-catenin) (Neural al... 29 9.0

>CTN2_MOUSE (Q61301) Alpha-2 catenin (Alpha-catenin-related protein) (Alpha|
           N-catenin)
          Length = 952

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 503 ATRARVTIRSYSSEPRDQLAMGVPPCAQGTSPTTAPRGHAGDRSSACA 360
           ATRA    R Y  +   +   G+   AQ TSPT   +GH G    A A
Sbjct: 234 ATRAN---RDYVFKQVQEAIAGISSAAQATSPTDEAKGHTGIGELAAA 278



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>CTN2_HUMAN (P26232) Alpha-2 catenin (Alpha-catenin-related protein) (Alpha|
           N-catenin)
          Length = 952

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 503 ATRARVTIRSYSSEPRDQLAMGVPPCAQGTSPTTAPRGHAGDRSSACA 360
           ATRA    R Y  +   +   G+   AQ TSPT   +GH G    A A
Sbjct: 234 ATRAN---RDYVFKQVQEAIAGISNAAQATSPTDEAKGHTGIGELAAA 278



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>CTN2_CHICK (P30997) Alpha-2 catenin (Alpha N-catenin) (Neural alpha-catenin)|
          Length = 906

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 503 ATRARVTIRSYSSEPRDQLAMGVPPCAQGTSPTTAPRGHAGDRSSACA 360
           ATRA    R Y  +   +   G+   AQ TSPT   +GH G    A A
Sbjct: 235 ATRAN---RDYVFKQVQEAIAGISNAAQATSPTDENKGHTGIGELAAA 279


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,130,574
Number of Sequences: 219361
Number of extensions: 705554
Number of successful extensions: 3329
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3325
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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