ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart57f05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0028G07, complete sequence Length = 157463 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 283 tggaggcggaagcggagggggtggcg 308 |||||||||| ||||||||||||||| Sbjct: 67074 tggaggcggaggcggagggggtggcg 67049
>ref|XM_743796.1| Aspergillus fumigatus Af293 hypothetical protein (Afu7g06210) partial mRNA Length = 1341 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 281 tatggaggcggaagcggagggggtgg 306 |||||||||||| ||||||||||||| Sbjct: 1285 tatggaggcggaggcggagggggtgg 1310
>emb|AL603913.14| Mouse DNA sequence from clone RP23-103H9 on chromosome 11 Contains the gene for a novel protein (3732413I11Rik), a novel gene (4930597A21Rik), the 5' end of the Ebf1 gene for early B-cell factor 1, a novel gene and a CpG island, complete sequence Length = 215524 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 94 cctcttccttgcccttaacctcctct 119 |||||||||||||||| ||||||||| Sbjct: 19791 cctcttccttgcccttcacctcctct 19766
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 agcggtggcgggatcattggcggcgg 339 ||||||||||||| |||||||||||| Sbjct: 23421948 agcggtggcgggagcattggcggcgg 23421973
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 283 tggaggcggaagcggagggggtggcg 308 |||||||||| ||||||||||||||| Sbjct: 17473060 tggaggcggaggcggagggggtggcg 17473035 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 ggaggcggaagcggaggggg 303 |||||||||||||||||||| Sbjct: 7350603 ggaggcggaagcggaggggg 7350622
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 283 tggaggcggaagcggagggggtggcg 308 |||||||||| ||||||||||||||| Sbjct: 17566770 tggaggcggaggcggagggggtggcg 17566745 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 ggaggcggaagcggaggggg 303 |||||||||||||||||||| Sbjct: 7420689 ggaggcggaagcggaggggg 7420708
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 314 agcggtggcgggatcattggcggcgg 339 ||||||||||||| |||||||||||| Sbjct: 23350139 agcggtggcgggagcattggcggcgg 23350164
>gb|AC159636.3| Mus musculus BAC clone RP24-93H15 from chromosome 12, complete sequence Length = 184821 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Plus Query: 183 gcagaggcggtgggagaggtggtggcggcg 212 ||||||||||||| ||||||||||||||| Sbjct: 132889 gcagaggcggtggcggaggtggtggcggcg 132918
>emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 162261 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 314 agcggtggcgggatcattggcggcgg 339 ||||||||||||| |||||||||||| Sbjct: 80211 agcggtggcgggagcattggcggcgg 80186
>gb|AY820775.1| Haematococcus pluvialis beta carotene C-4 oxygenase (crt01) gene, promoter region and 5' UTR Length = 1042 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 gtggcggcgcaagtggcagcg 224 ||||||||||||||||||||| Sbjct: 514 gtggcggcgcaagtggcagcg 534
>gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete sequence Length = 906719 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 tggtggccacgggagcagagg 189 ||||||||||||||||||||| Sbjct: 648614 tggtggccacgggagcagagg 648594
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 325 gatcattggcggcggtcctggcggt 349 |||||| |||||||||||||||||| Sbjct: 3950925 gatcatcggcggcggtcctggcggt 3950949 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 352 gatcatcggcggcggtccaggcggt 376 |||||||||||||||||| |||||| Sbjct: 3950925 gatcatcggcggcggtcctggcggt 3950949
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 catggcgtccaaggtgtcggc 84 ||||||||||||||||||||| Sbjct: 2734438 catggcgtccaaggtgtcggc 2734418
>ref|XM_426950.1| PREDICTED: Gallus gallus similar to zinc finger protein 499 (LOC429393), partial mRNA Length = 933 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 tggcggcggtcctggcggtgg 351 ||||||||||||||||||||| Sbjct: 876 tggcggcggtcctggcggtgg 856
>ref|XM_568128.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNL05960) partial mRNA Length = 696 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 tggtggccacgggagcagagg 189 ||||||||||||||||||||| Sbjct: 73 tggtggccacgggagcagagg 53
>emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 9/14 Length = 306550 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 catggcgtccaaggtgtcggc 84 ||||||||||||||||||||| Sbjct: 194751 catggcgtccaaggtgtcggc 194731
>ref|XM_341709.2| PREDICTED: Rattus norvegicus core-binding factor, runt domain, alpha subunit 2; translocated to, 3 (predicted) (Cbfa2t3_predicted), mRNA Length = 4723 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 80 tcggcttcatgtggcctcttccttg 104 |||||||| |||||||||||||||| Sbjct: 632 tcggcttcctgtggcctcttccttg 608
>emb|AJ893538.1| Hapalemur simus partial ar gene for androgen receptor, exon 1 Length = 1374 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 285 gaggcggaagcggagggggtggcgg 309 |||| |||||||||||||||||||| Sbjct: 1009 gaggaggaagcggagggggtggcgg 985
>emb|AJ893536.1| Lemur catta partial ar gene for androgen receptor, exon 1 Length = 1374 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 285 gaggcggaagcggagggggtggcgg 309 |||| |||||||||||||||||||| Sbjct: 1009 gaggaggaagcggagggggtggcgg 985
>gb|BC072529.1| Rattus norvegicus heterogeneous nuclear ribonucleoprotein U, mRNA (cDNA clone MGC:91534 IMAGE:7096906), complete cds Length = 3380 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 gagaggtggtggcggcgcaagtgg 219 ||||||||||||||||| |||||| Sbjct: 2303 gagaggtggtggcggcggaagtgg 2326
>ref|NM_057139.1| Rattus norvegicus heterogeneous nuclear ribonucleoprotein U (Hnrpu), mRNA Length = 3563 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 gagaggtggtggcggcgcaagtgg 219 ||||||||||||||||| |||||| Sbjct: 2782 gagaggtggtggcggcggaagtgg 2805
>gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0122P24, complete sequence Length = 136104 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 ggaggcggaagcggaggggg 303 |||||||||||||||||||| Sbjct: 120195 ggaggcggaagcggaggggg 120176
>gb|AC145809.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0023E20, complete sequence Length = 130827 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 ggaggcggaagcggaggggg 303 |||||||||||||||||||| Sbjct: 12566 ggaggcggaagcggaggggg 12547
>gb|AC100726.7| Mus musculus chromosome 19, clone RP24-245B11, complete sequence Length = 176074 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 acaatggtggccacgggagcagag 188 |||||||||||||| ||||||||| Sbjct: 22683 acaatggtggccactggagcagag 22660
>ref|XM_459901.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E14256g) partial mRNA Length = 1986 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cctcttgtttgcagtgacca 134 |||||||||||||||||||| Sbjct: 531 cctcttgtttgcagtgacca 512
>gb|AC129188.3| Mus musculus BAC clone RP23-446G23 from chromosome 19, complete sequence Length = 175245 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 gcctcttccttgcccttaac 112 |||||||||||||||||||| Sbjct: 101301 gcctcttccttgcccttaac 101320
>gb|AC122294.2| Mus musculus BAC clone RP23-259F3 from 19, complete sequence Length = 160892 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 acaatggtggccacgggagcagag 188 |||||||||||||| ||||||||| Sbjct: 46746 acaatggtggccactggagcagag 46769
>gb|AC163276.4| Mus musculus chromosome 19, clone RP24-316F20, complete sequence Length = 169300 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 gcctcttccttgcccttaac 112 |||||||||||||||||||| Sbjct: 154736 gcctcttccttgcccttaac 154717
>emb|X55704.1|PPLPD P.putida LPD-3 gene for lipoamide dehydrogenase Length = 4941 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 380 atcatcggcggaggccctggtggc 403 ||||||||||| |||||||||||| Sbjct: 3450 atcatcggcggtggccctggtggc 3473
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii Length = 2037969 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cctcttgtttgcagtgacca 134 |||||||||||||||||||| Sbjct: 1075849 cctcttgtttgcagtgacca 1075830
>gb|AC079906.15| Homo sapiens 12q BAC RP11-618L22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180688 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 cttcatgtggcctcttcctt 103 |||||||||||||||||||| Sbjct: 154453 cttcatgtggcctcttcctt 154434
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ggagaggtggtggcggcgca 214 |||||||||||||||||||| Sbjct: 2968435 ggagaggtggtggcggcgca 2968454
>gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042K08, from chromosome 2, complete sequence Length = 164628 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 ggaggcggaagcggaggggg 303 |||||||||||||||||||| Sbjct: 88875 ggaggcggaagcggaggggg 88856
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 gatcatcggcggcgggagcg 425 |||||||||||||||||||| Sbjct: 3445077 gatcatcggcggcgggagcg 3445096
>gb|AY394844.4| Pseudomonas sp. M18 pyoluteorin biosynthetic and ABC transporter gene cluster, partial sequence Length = 32800 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 ggcatcatcggcggaggccc 396 |||||||||||||||||||| Sbjct: 2832 ggcatcatcggcggaggccc 2851
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 ggaggcggaagcggaggggg 303 |||||||||||||||||||| Sbjct: 10438372 ggaggcggaagcggaggggg 10438391
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 gcggtgggagaggtggtggcggcg 212 |||||||||| ||||||||||||| Sbjct: 19969789 gcggtgggaggggtggtggcggcg 19969812
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 200 ggtggtggcggcgcaagtggcagc 223 ||||||||||||||| |||||||| Sbjct: 8939359 ggtggtggcggcgcaggtggcagc 8939382
>ref|XM_579596.1| PREDICTED: Rattus norvegicus heterogeneous nuclear ribonucleoprotein U (Hnrpu), mRNA Length = 3064 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 gagaggtggtggcggcgcaagtgg 219 ||||||||||||||||| |||||| Sbjct: 2281 gagaggtggtggcggcggaagtgg 2304
>dbj|AP001383.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0453A06 Length = 154378 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 200 ggtggtggcggcgcaagtggcagc 223 ||||||||||||||| |||||||| Sbjct: 47114 ggtggtggcggcgcaggtggcagc 47137
>dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0508B05 Length = 166165 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 gcggtgggagaggtggtggcggcg 212 |||||||||| ||||||||||||| Sbjct: 147390 gcggtgggaggggtggtggcggcg 147413
>dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1026E06 Length = 162784 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 ggaggcggaagcggaggggg 303 |||||||||||||||||||| Sbjct: 14986 ggaggcggaagcggaggggg 15005
>dbj|AP005609.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0014M17 Length = 156778 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 gcggtgggagaggtggtggcggcg 212 |||||||||| ||||||||||||| Sbjct: 73910 gcggtgggaggggtggtggcggcg 73933
>gb|AC129557.10| Mus musculus chromosome 19, clone RP24-245F23, complete sequence Length = 174415 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 cttgcccttaacctcctctt 120 |||||||||||||||||||| Sbjct: 131415 cttgcccttaacctcctctt 131396
>dbj|D14048.1|RATSP120 Rattus norvegicus mRNA for SP120, complete cds Length = 3563 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 gagaggtggtggcggcgcaagtgg 219 ||||||||||||||||| |||||| Sbjct: 2782 gagaggtggtggcggcggaagtgg 2805 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,784,719 Number of Sequences: 3902068 Number of extensions: 2784719 Number of successful extensions: 83544 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82988 Number of HSP's gapped (non-prelim): 556 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
