ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart57f03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003A09, complete sequence Length = 167222 Score = 289 bits (146), Expect = 5e-75 Identities = 215/238 (90%) Strand = Plus / Minus Query: 224 ccatggcagcgatggggcaggagggggacgacatcgaccactacgaggtgctccgcctgc 283 ||||||| |||||||||||||||| |||||| |||||||||||||||||||| |||| | Sbjct: 41119 ccatggcggcgatggggcaggaggacgacgacgtcgaccactacgaggtgctctgcctcc 41060 Query: 284 cgtccggcgaggagggcgcggcgctgagcgtcgagcagatcgagaaggcctaccggacgc 343 | ||||||||||||||||||| ||| | ||||||||||||||||||| |||||||||| Sbjct: 41059 cctccggcgaggagggcgcggggctctccctcgagcagatcgagaaggcgtaccggacgc 41000 Query: 344 agtcgcggctccggcaccccgacaagcgccccgacgaccccaacgccaccgccgacttcc 403 |||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 40999 agtcgcggctgcgccacccggacaagcgccccgacgaccccaacgccaccgccgacttcc 40940 Query: 404 agagcctcgccagctcgtacaagtttctccgggatgagtccctccgccgtcagttcga 461 || ||||||| ||||| ||||| || |||||||| |||||||||||||| |||||||| Sbjct: 40939 agcgcctcgcgagctcctacaacttcctccgggacgagtccctccgccgccagttcga 40882 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 509 ccggggtcaagcggcggaaggccgt 533 |||| |||||||||||||||||||| Sbjct: 40834 ccggcgtcaagcggcggaaggccgt 40810
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 289 bits (146), Expect = 5e-75 Identities = 215/238 (90%) Strand = Plus / Minus Query: 224 ccatggcagcgatggggcaggagggggacgacatcgaccactacgaggtgctccgcctgc 283 ||||||| |||||||||||||||| |||||| |||||||||||||||||||| |||| | Sbjct: 2002358 ccatggcggcgatggggcaggaggacgacgacgtcgaccactacgaggtgctctgcctcc 2002299 Query: 284 cgtccggcgaggagggcgcggcgctgagcgtcgagcagatcgagaaggcctaccggacgc 343 | ||||||||||||||||||| ||| | ||||||||||||||||||| |||||||||| Sbjct: 2002298 cctccggcgaggagggcgcggggctctccctcgagcagatcgagaaggcgtaccggacgc 2002239 Query: 344 agtcgcggctccggcaccccgacaagcgccccgacgaccccaacgccaccgccgacttcc 403 |||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 2002238 agtcgcggctgcgccacccggacaagcgccccgacgaccccaacgccaccgccgacttcc 2002179 Query: 404 agagcctcgccagctcgtacaagtttctccgggatgagtccctccgccgtcagttcga 461 || ||||||| ||||| ||||| || |||||||| |||||||||||||| |||||||| Sbjct: 2002178 agcgcctcgcgagctcctacaacttcctccgggacgagtccctccgccgccagttcga 2002121 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 509 ccggggtcaagcggcggaaggccgt 533 |||| |||||||||||||||||||| Sbjct: 2002073 ccggcgtcaagcggcggaaggccgt 2002049
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 289 bits (146), Expect = 5e-75 Identities = 215/238 (90%) Strand = Plus / Minus Query: 224 ccatggcagcgatggggcaggagggggacgacatcgaccactacgaggtgctccgcctgc 283 ||||||| |||||||||||||||| |||||| |||||||||||||||||||| |||| | Sbjct: 2002370 ccatggcggcgatggggcaggaggacgacgacgtcgaccactacgaggtgctctgcctcc 2002311 Query: 284 cgtccggcgaggagggcgcggcgctgagcgtcgagcagatcgagaaggcctaccggacgc 343 | ||||||||||||||||||| ||| | ||||||||||||||||||| |||||||||| Sbjct: 2002310 cctccggcgaggagggcgcggggctctccctcgagcagatcgagaaggcgtaccggacgc 2002251 Query: 344 agtcgcggctccggcaccccgacaagcgccccgacgaccccaacgccaccgccgacttcc 403 |||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 2002250 agtcgcggctgcgccacccggacaagcgccccgacgaccccaacgccaccgccgacttcc 2002191 Query: 404 agagcctcgccagctcgtacaagtttctccgggatgagtccctccgccgtcagttcga 461 || ||||||| ||||| ||||| || |||||||| |||||||||||||| |||||||| Sbjct: 2002190 agcgcctcgcgagctcctacaacttcctccgggacgagtccctccgccgccagttcga 2002133 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 509 ccggggtcaagcggcggaaggccgt 533 |||| |||||||||||||||||||| Sbjct: 2002085 ccggcgtcaagcggcggaaggccgt 2002061
>dbj|AK068822.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013168H14, full insert sequence Length = 1217 Score = 281 bits (142), Expect = 1e-72 Identities = 214/238 (89%) Strand = Plus / Plus Query: 224 ccatggcagcgatggggcaggagggggacgacatcgaccactacgaggtgctccgcctgc 283 ||||||| |||||||||||||||| |||||| |||||||||||||||||||| |||| | Sbjct: 48 ccatggcggcgatggggcaggaggacgacgacgtcgaccactacgaggtgctctgcctcc 107 Query: 284 cgtccggcgaggagggcgcggcgctgagcgtcgagcagatcgagaaggcctaccggacgc 343 | ||||||||||||||||||| ||| | ||||||||||||||||||| |||||||||| Sbjct: 108 cctccggcgaggagggcgcggggctctccctcgagcagatcgagaaggcgtaccggacgc 167 Query: 344 agtcgcggctccggcaccccgacaagcgccccgacgaccccaacgccaccgccgacttcc 403 |||||||||| || ||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct: 168 agtcgcggctgcgccacccggacaagcgctccgacgaccccaacgccaccgccgacttcc 227 Query: 404 agagcctcgccagctcgtacaagtttctccgggatgagtccctccgccgtcagttcga 461 || ||||||| ||||| ||||| || |||||||| |||||||||||||| |||||||| Sbjct: 228 agcgcctcgcgagctcctacaacttcctccgggacgagtccctccgccgccagttcga 285 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 509 ccggggtcaagcggcggaaggccgt 533 |||| |||||||||||||||||||| Sbjct: 333 ccggcgtcaagcggcggaaggccgt 357
>gb|DQ459071.1| Sorghum bicolor cultivar BTx623 clone BAC c0156b06, complete sequence Length = 112592 Score = 270 bits (136), Expect = 4e-69 Identities = 214/240 (89%) Strand = Plus / Plus Query: 222 cgccatggcagcgatggggcaggagggggacgacatcgaccactacgaggtgctccgcct 281 ||||||||| ||| ||| |||||||| ||| ||| |||||||||||||||||||| |||| Sbjct: 99273 cgccatggcggcgttggtgcaggaggcggatgacgtcgaccactacgaggtgctctgcct 99332 Query: 282 gccgtccggcgaggagggcgcggcgctgagcgtcgagcagatcgagaaggcctaccggac 341 ||||| || ||||| ||||||||||||| ||||||||||||||||||||| |||||||| Sbjct: 99333 cccgtcgggggaggaaggcgcggcgctgaccgtcgagcagatcgagaaggcgtaccggac 99392 Query: 342 gcagtcgcggctccggcaccccgacaagcgccccgacgaccccaacgccaccgccgactt 401 ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 99393 tcagtcgcggctgcgccaccccgacaagcgccccgacgatcccaacgccaccgccgactt 99452 Query: 402 ccagagcctcgccagctcgtacaagtttctccgggatgagtccctccgccgtcagttcga 461 |||| ||||| ||||||| |||||| | ||||| || || ||||||||||| |||||||| Sbjct: 99453 ccagcgcctctccagctcctacaagctcctccgcgacgaatccctccgccgccagttcga 99512
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Minus Query: 10 cccgttccccccgcctcaccgcctcc 35 ||||||||||||||| |||||||||| Sbjct: 7050742 cccgttccccccgccgcaccgcctcc 7050717 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 gcaccgcctcccgttccccccgcc 24 |||||||||||||||||| ||||| Sbjct: 4292159 gcaccgcctcccgttcccgccgcc 4292182
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 39 cgcccagggtctccgccgccga 60 |||||||||||||||||||||| Sbjct: 2332677 cgcccagggtctccgccgccga 2332656
>ref|NM_183768.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1338 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 240 gcaggagggggacgacatcgaccac 264 |||||||| |||||||||||||||| Sbjct: 642 gcaggaggaggacgacatcgaccac 666
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 375 cgacgaccccaacgccaccgccgac 399 ||||||| ||||||||||||||||| Sbjct: 2193619 cgacgacgccaacgccaccgccgac 2193595
>emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genome; segment 16/16 Length = 227214 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 315 cgagcagatcgagaaggcctaccgg 339 |||| |||||||||||||||||||| Sbjct: 59649 cgagaagatcgagaaggcctaccgg 59625
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 240 gcaggagggggacgacatcgaccac 264 |||||||| |||||||||||||||| Sbjct: 12141210 gcaggaggaggacgacatcgaccac 12141186
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 tccgcctgccgtccggcgagg 295 ||||||||||||||||||||| Sbjct: 2184368 tccgcctgccgtccggcgagg 2184348 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ggcgaggagggcgcggcgct 308 |||||||||||||||||||| Sbjct: 265470 ggcgaggagggcgcggcgct 265489
>dbj|AP003414.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1153F04 Length = 158174 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 240 gcaggagggggacgacatcgaccac 264 |||||||| |||||||||||||||| Sbjct: 108150 gcaggaggaggacgacatcgaccac 108126
>dbj|AK070361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048D19, full insert sequence Length = 1888 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 240 gcaggagggggacgacatcgaccac 264 |||||||| |||||||||||||||| Sbjct: 1016 gcaggaggaggacgacatcgaccac 1040
>ref|XM_481266.1| Oryza sativa (japonica cultivar-group), mRNA Length = 324 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 ccgccgccgacgccctcgcatcct 74 ||||||||||||||||||| |||| Sbjct: 140 ccgccgccgacgccctcgcttcct 117
>gb|AY632766.1| Mycobacterium avium possible lipoprotein (lprC) gene, complete cds Length = 558 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 gcgccccgacgaccccaacg 388 |||||||||||||||||||| Sbjct: 411 gcgccccgacgaccccaacg 430
>gb|AC113334.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1123_F01, complete sequence Length = 118799 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 cggggtcaagcggcggaagg 529 |||||||||||||||||||| Sbjct: 84879 cggggtcaagcggcggaagg 84898
>gb|AF241727.1| Homo sapiens chromosome X clone RP5-972B16 map p11.4, complete sequence Length = 155156 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gcagcgatggggcaggaggg 248 |||||||||||||||||||| Sbjct: 83197 gcagcgatggggcaggaggg 83216
>ref|XM_535768.2| PREDICTED: Canis familiaris similar to kalirin, RhoGEF kinase isoform 1 (LOC478592), mRNA Length = 9030 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 cgccgacttccagagcctcg 412 |||||||||||||||||||| Sbjct: 879 cgccgacttccagagcctcg 898
>emb|Y10438.1|SPFKBAD Streptomyces sp. MA6548 fkbA gene and partial fkbD gene encoding FK506 polyketide synthase and cytochrome P-450-9-deoxo-FK506 hydroxylase, respectively Length = 19791 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 287 ccggcgaggagggcgcggcgctga 310 ||||||||||| |||||||||||| Sbjct: 18707 ccggcgaggagagcgcggcgctga 18730
>emb|BX842607.1|OSJN00296 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1248C03, complete sequence Length = 141099 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 ccgccgccgacgccctcgcatcct 74 ||||||||||||||||||| |||| Sbjct: 90636 ccgccgccgacgccctcgcttcct 90659
>emb|AJ582817.3| Streptomyces kanamyceticus kanamycin biosynthetic gene cluster, strain ATCC12853 Length = 47050 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ccagggtctccgccgccgac 61 |||||||||||||||||||| Sbjct: 42124 ccagggtctccgccgccgac 42105
>gb|AF307843.1| Chlamydomonas reinhardtii 4-alpha-glucanotransferase (STA11) gene, promoter and complete cds Length = 9539 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 gcccagggtctccgccgccg 59 |||||||||||||||||||| Sbjct: 8782 gcccagggtctccgccgccg 8763
>gb|L20140.1|MZEALLERGB Zea mays pectate lyase homolog gene, complete cds Length = 1979 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ccccgacgaccccaacgcca 391 |||||||||||||||||||| Sbjct: 1320 ccccgacgaccccaacgcca 1339
>gb|AC181984.1| Pan troglodytes chromosome X clone CH251-244H4 map human ortholog p11.4, complete sequence Length = 184116 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gcagcgatggggcaggaggg 248 |||||||||||||||||||| Sbjct: 11742 gcagcgatggggcaggaggg 11761
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 ccgccgccgacgccctcgcatcct 74 ||||||||||||||||||| |||| Sbjct: 1653354 ccgccgccgacgccctcgcttcct 1653377
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tctccgccgccgacgccctc 67 |||||||||||||||||||| Sbjct: 22504218 tctccgccgccgacgccctc 22504199
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 ccgccgccgacgccctcgcatcct 74 ||||||||||||||||||| |||| Sbjct: 11095060 ccgccgccgacgccctcgcttcct 11095037
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 273 gctccgcctgccgtccggcgaggagggcgcgg 304 |||||| | |||||||||||||| |||||||| Sbjct: 4062411 gctccggccgccgtccggcgaggcgggcgcgg 4062380
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 cggggtcaagcggcggaagg 529 |||||||||||||||||||| Sbjct: 24802896 cggggtcaagcggcggaagg 24802915
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 tccgccgccgacgccctcgc 69 |||||||||||||||||||| Sbjct: 427346 tccgccgccgacgccctcgc 427365
>gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 daptomycin biosynthetic gene cluster, partial sequence Length = 127559 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 caccgacgccgcccccgtcg 117 |||||||||||||||||||| Sbjct: 77108 caccgacgccgcccccgtcg 77127
>gb|AE004610.1| Pseudomonas aeruginosa PAO1, section 171 of 529 of the complete genome Length = 10506 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 ttcttcaccgctcgccgacg 149 |||||||||||||||||||| Sbjct: 986 ttcttcaccgctcgccgacg 1005
>gb|AC150565.1| Pan troglodytes chromosome X clone RP43-009M14 map human ortholog p11.4, complete sequence Length = 160315 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 gcagcgatggggcaggaggg 248 |||||||||||||||||||| Sbjct: 156995 gcagcgatggggcaggaggg 157014
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0019L07 Length = 131650 Score = 40.1 bits (20), Expect = 7.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 273 gctccgcctgccgtccggcgaggagggcgcgg 304 |||||| | |||||||||||||| |||||||| Sbjct: 106065 gctccggccgccgtccggcgaggcgggcgcgg 106034
>dbj|AP006162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1331F11 Length = 132205 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tctccgccgccgacgccctc 67 |||||||||||||||||||| Sbjct: 19419 tctccgccgccgacgccctc 19400
>dbj|AB164642.1| Streptomyces kanamyceticus kanamycin biosynthetic gene cluster, complete cds Length = 25467 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ccagggtctccgccgccgac 61 |||||||||||||||||||| Sbjct: 24717 ccagggtctccgccgccgac 24698
>dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1446H11 Length = 135488 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 ccgccgccgacgccctcgcatcct 74 ||||||||||||||||||| |||| Sbjct: 65666 ccgccgccgacgccctcgcttcct 65643
>dbj|AK106869.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-D06, full insert sequence Length = 1399 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tctccgccgccgacgccctc 67 |||||||||||||||||||| Sbjct: 946 tctccgccgccgacgccctc 927
>dbj|AK067434.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099F19, full insert sequence Length = 3860 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 cggggtcaagcggcggaagg 529 |||||||||||||||||||| Sbjct: 88 cggggtcaagcggcggaagg 107
>gb|AF117827.1|AF117827 Methylococcus capsulatus putative nonaheme c-cytochrome, cytochrome c553o (occ), and putative septaheme c-cytochrome genes, complete cds; and unknown gene Length = 11002 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 tccgccgccgacgccctcgc 69 |||||||||||||||||||| Sbjct: 7326 tccgccgccgacgccctcgc 7345
>emb|AL049775.2|CNS00006 Human chromosome 14 DNA sequence BAC R-497E19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 181433 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ggagggcgcggcgctgagcg 313 |||||||||||||||||||| Sbjct: 99633 ggagggcgcggcgctgagcg 99652
>dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0560B10, complete sequence Length = 108295 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 ccgccgccgacgccctcgcatcct 74 ||||||||||||||||||| |||| Sbjct: 53576 ccgccgccgacgccctcgcttcct 53553
>gb|AC156998.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0086B08, complete sequence Length = 148274 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 cggggtcaagcggcggaagg 529 |||||||||||||||||||| Sbjct: 129395 cggggtcaagcggcggaagg 129414
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 gcgccccgacgaccccaacg 388 |||||||||||||||||||| Sbjct: 2804436 gcgccccgacgaccccaacg 2804417
>emb|AJ628422.2| Streptomyces kanamyceticus partial kanamycin biosynthesis gene cluster, strain DSM 40500 Length = 41576 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ccagggtctccgccgccgac 61 |||||||||||||||||||| Sbjct: 38781 ccagggtctccgccgccgac 38762 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,401,470 Number of Sequences: 3902068 Number of extensions: 2401470 Number of successful extensions: 58823 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57084 Number of HSP's gapped (non-prelim): 1739 length of query: 533 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 510 effective length of database: 17,143,297,704 effective search space: 8743081829040 effective search space used: 8743081829040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
