>SYM_BIFLO (P59076) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 621

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = -1

Query: 496 NSFVTSNQLWFRRQNSNWRIGTILHVTANSSTDGNHLW--FRRHNRTGRWRLSPLLGVGA 323
           N ++++ + W + ++   R+GT+LHV A + +D NHL   F  H+    W      G  +
Sbjct: 471 NKYISATEPW-KIKDDQARLGTVLHVAAQAVSDANHLLAPFLPHSAQKVWEALGGTGTFS 529

Query: 322 AIEHAERLPDL 290
            +   + + DL
Sbjct: 530 PLPELKEVEDL 540

>ADCY4_HUMAN (Q8NFM4) Adenylate cyclase type 4 (EC 4.6.1.1) (Adenylate cyclase|
           type IV) (ATP pyrophosphate-lyase 4) (Adenylyl cyclase
           4)
          Length = 1077

 Score = 32.3 bits (72), Expect = 0.90
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 446 LEDWHHSSRHC*LVHGWQPSVVSPPQPHREVAAFSSAWS 330
           LE W  +     L HG  P   S P P + +A+FS+ WS
Sbjct: 482 LESWGAAKPFAHLSHGDSPVSTSTPLPEKTLASFSTQWS 520

>UL70_MCMVS (Q69153) Probable primase (DNA replication protein UL70)|
          Length = 964

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
 Frame = -1

Query: 430  ILHVT--ANSSTDGNHLWFR--RHNRTGRWRLSPLLGVGAAIE---HAERLPDLLGLG-- 278
            +LH+T  A + +DGN L  R  R   +GR  L PLL    ++E    A  LP L+G G  
Sbjct: 761  VLHITDRACADSDGNFLQSRARRAMSSGRLPLGPLLRAHLSLESGQSAPSLPTLVGRGGG 820

Query: 277  -----HSTVEESRGAGDLGED 230
                  S  EE R  G   E+
Sbjct: 821  GEGGASSDYEEERAVGSDEEE 841

>Y1866_MYCBO (P0A5F6) Hypothetical protein Mb1866c|
          Length = 628

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = -1

Query: 451 SNWRIGTILHVTANS----STDGNHLWFRRHNRTGRWRLSPLLGV 329
           S W  G   H         ST G+HL     N TG WR+ PL G+
Sbjct: 318 SGWFDGGYAHAAIKRFLTVSTPGSHLILGPWNHTGGWRVDPLRGL 362

>Y1835_MYCTU (P0A5F5) Hypothetical protein Rv1835c/MT1883|
          Length = 628

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = -1

Query: 451 SNWRIGTILHVTANS----STDGNHLWFRRHNRTGRWRLSPLLGV 329
           S W  G   H         ST G+HL     N TG WR+ PL G+
Sbjct: 318 SGWFDGGYAHAAIKRFLTVSTPGSHLILGPWNHTGGWRVDPLRGL 362

>RECR_BURMA (Q62JV0) Recombination protein recR|
          Length = 200

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
 Frame = -1

Query: 352 RLSPLLGVGAAIEHAERL---------PDLLGLGHSTVEESRGAGDLGEDI*RRG----- 215
           RLSPL G+G    H +RL          +++   + T E    A  LG+ +  RG     
Sbjct: 112 RLSPLDGIGPKEIHFDRLVRRASDGIVKEVVLATNFTNEGEATAHYLGQTLKARGLAVTR 171

Query: 214 -QRGVPISGARVYAGAGLCSR 155
             RGVP+ G   Y  AG  +R
Sbjct: 172 LARGVPVGGELEYVDAGTIAR 192

>RECR_BURPS (Q63UU6) Recombination protein recR|
          Length = 202

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
 Frame = -1

Query: 352 RLSPLLGVGAAIEHAERL---------PDLLGLGHSTVEESRGAGDLGEDI*RRG----- 215
           RLSPL G+G    H +RL          +++   + T E    A  LG+ +  RG     
Sbjct: 114 RLSPLDGIGPKEIHFDRLVRRASDGIVKEVVLATNFTNEGEATAHYLGQTLKARGLAVTR 173

Query: 214 -QRGVPISGARVYAGAGLCSR 155
             RGVP+ G   Y  AG  +R
Sbjct: 174 LARGVPVGGELEYVDAGTIAR 194

>RPOB_MYCGA (P47715) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1390

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
 Frame = -1

Query: 436 GTILHVTA---------NSSTDGNHLWFRRHNRTGRWRLSPLLGVGAAIEHAERLPD 293
           GT+ +V A         N STD N L F + N+   +  SP++ VG  IE  + L D
Sbjct: 815 GTVTYVDASKITVKGEDNKSTDYNLLKFVKSNKNTCYNQSPIVAVGDKIETNQALAD 871

>ATG26_YARLI (Q6C8M8) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26)
          Length = 1424

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -1

Query: 529 WRVATILHVTANSFVTSNQLWF-----RRQNSNWRIGTILHVTANSSTDGNHLW 383
           W +  +L +  + ++T+  + F     RRQN+N R GT++     S  +G   W
Sbjct: 189 WLLKNVL-IQGHLYITAKHMCFLSYLPRRQNANIRSGTLVKARKRSLREGTRYW 241

>Y627_PYRHO (O58361) UPF0135 protein PH0627|
          Length = 250

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = -1

Query: 334 GVGAAIEHAERLPDLLGLGHSTVEESRGAGDLGEDI*RRGQRGVPISGARVYAG 173
           G G AIE A R  DLL  G  T E+ R A DL   +   G       G +   G
Sbjct: 178 GGGFAIEEASRKADLLITGEITHEDYRVAEDLRVSVIAAGHYATETLGVKALMG 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,889,797
Number of Sequences: 219361
Number of extensions: 1150854
Number of successful extensions: 3562
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3558
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)