ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart56e06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF321856.1|AF321856 Lolium rigidum clone FHH-t putative cytochrome P450 mRNA, complete cds Length = 1775 Score = 194 bits (98), Expect = 5e-47 Identities = 128/138 (92%) Strand = Plus / Plus Query: 1 cggaggacgaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtgg 60 |||||| |||| ||||||||||||||||||||||||| || ||||||||| ||||||||| Sbjct: 642 cggaggccgacgccgacacggacatgtccgtggaggcgcaggagttcaaggaggtggtgg 701 Query: 61 acgagatcatcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggt 120 || || |||||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 702 acaagctcatcccgcacctcggcgccgccaacatgtgggactacctgccggtgatgcggt 761 Query: 121 ggttcgacgtgttcggcg 138 |||||||||| ||||||| Sbjct: 762 ggttcgacgtcttcggcg 779
>dbj|AB159039.1| Lolium rigidum mRNA for P450, complete cds, clone:CYP81B1v3 Length = 1554 Score = 194 bits (98), Expect = 5e-47 Identities = 128/138 (92%) Strand = Plus / Plus Query: 1 cggaggacgaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtgg 60 |||||| |||| ||||||||||||||||||||||||| || ||||||||| ||||||||| Sbjct: 611 cggaggccgacgccgacacggacatgtccgtggaggcgcaggagttcaaggaggtggtgg 670 Query: 61 acgagatcatcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggt 120 || || |||||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 671 acaagctcatcccgcacctcggcgccgccaacatgtgggactacctgccggtgatgcggt 730 Query: 121 ggttcgacgtgttcggcg 138 |||||||||| ||||||| Sbjct: 731 ggttcgacgtcttcggcg 748
>dbj|AB159038.1| Lolium rigidum mRNA for P450, complete cds, clone:CYP81B1v2 Length = 1554 Score = 194 bits (98), Expect = 5e-47 Identities = 128/138 (92%) Strand = Plus / Plus Query: 1 cggaggacgaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtgg 60 |||||| |||| ||||||||||||||||||||||||| || ||||||||| ||||||||| Sbjct: 611 cggaggccgacgccgacacggacatgtccgtggaggcgcaggagttcaaggaggtggtgg 670 Query: 61 acgagatcatcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggt 120 || || |||||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 671 acaagctcatcccgcacctcggcgccgccaacatgtgggactacctgccggtgatgcggt 730 Query: 121 ggttcgacgtgttcggcg 138 |||||||||| ||||||| Sbjct: 731 ggttcgacgtcttcggcg 748
>gb|AF321857.1|AF321857 Lolium rigidum clone FHH-y putative cytochrome P450 mRNA, complete cds Length = 1810 Score = 186 bits (94), Expect = 1e-44 Identities = 127/138 (92%) Strand = Plus / Plus Query: 1 cggaggacgaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtgg 60 |||||| |||| ||||||||||||||||||||||||| || ||||||||| ||||||||| Sbjct: 648 cggaggccgacgccgacacggacatgtccgtggaggcgcaggagttcaaggaggtggtgg 707 Query: 61 acgagatcatcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggt 120 || || |||||||| |||||||||||||||||| ||||||||||||||| |||||||||| Sbjct: 708 acaagctcatcccgcacctcggcgccgccaacatgtgggactacctgcccgtgatgcggt 767 Query: 121 ggttcgacgtgttcggcg 138 |||||||||| ||||||| Sbjct: 768 ggttcgacgtcttcggcg 785
>gb|AF321855.1|AF321855 Lolium rigidum clone FHH-v putative cytochrome P450 mRNA, complete cds Length = 1795 Score = 186 bits (94), Expect = 1e-44 Identities = 127/138 (92%) Strand = Plus / Plus Query: 1 cggaggacgaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtgg 60 |||||| |||| ||||||||||||||||| ||||||| || ||||||||| ||||||||| Sbjct: 642 cggaggccgacgccgacacggacatgtccctggaggcgcaggagttcaaggaggtggtgg 701 Query: 61 acgagatcatcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggt 120 || || |||||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 702 acaagctcatcccgcacctcggcgccgccaacatgtgggactacctgccggtgatgcggt 761 Query: 121 ggttcgacgtgttcggcg 138 |||||||||| ||||||| Sbjct: 762 ggttcgacgtcttcggcg 779
>dbj|AB159037.1| Lolium rigidum mRNA for P450, complete cds, clone:CYP81B1v1 Length = 1554 Score = 170 bits (86), Expect = 7e-40 Identities = 125/138 (90%) Strand = Plus / Plus Query: 1 cggaggacgaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtgg 60 |||||| |||| ||||||||||||||||||||||||| || ||||||||| ||||||||| Sbjct: 611 cggaggccgacgccgacacggacatgtccgtggaggcgcaggagttcaaggaggtggtgg 670 Query: 61 acgagatcatcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggt 120 || || ||||||| |||||||||||||||||| ||||||||||||||| || ||||||| Sbjct: 671 acaagcccatcccgcacctcggcgccgccaacatgtgggactacctgcccgtcatgcggt 730 Query: 121 ggttcgacgtgttcggcg 138 |||||||||| ||||||| Sbjct: 731 ggttcgacgtcttcggcg 748
>ref|XM_469850.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2199 Score = 123 bits (62), Expect = 1e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 9 gaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatc 68 ||||| ||||| |||||||||||||| ||||| ||||| ||| |||| || ||||||||| Sbjct: 1264 gacccggacaccgacatgtccgtggaagcccaggagtttaagcaggtcgtcgacgagatc 1323 Query: 69 atcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgac 128 |||||| || ||||||| |||||| |||||||||| |||||| | | |||||||||||| Sbjct: 1324 atcccgcacatcggcgcggccaacctgtgggactacttgccggcgctccggtggttcgac 1383 Query: 129 gtgttcggcg 138 |||||||||| Sbjct: 1384 gtgttcggcg 1393
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 123 bits (62), Expect = 1e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 9 gaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatc 68 ||||| ||||| |||||||||||||| ||||| ||||| ||| |||| || ||||||||| Sbjct: 31140190 gacccggacaccgacatgtccgtggaagcccaggagtttaagcaggtcgtcgacgagatc 31140249 Query: 69 atcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgac 128 |||||| || ||||||| |||||| |||||||||| |||||| | | |||||||||||| Sbjct: 31140250 atcccgcacatcggcgcggccaacctgtgggactacttgccggcgctccggtggttcgac 31140309 Query: 129 gtgttcggcg 138 |||||||||| Sbjct: 31140310 gtgttcggcg 31140319 Score = 83.8 bits (42), Expect = 1e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 5 ggacgaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacga 64 ||||||| | |||||||||||||||||||||||||| ||||||||||| || | ||||| Sbjct: 31145358 ggacgacgcggacacggacatgtccgtggaggcccaggagttcaagaatgtcctcgacga 31145417 Query: 65 gatcatcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggtt 124 | ||| |||| |||||||| |||||| |||||| ||| |||||| | | ||| ||| Sbjct: 31145418 gctcaacccgcttctcggcgcggccaacctgtgggattacttgccggcgctccgggtgtt 31145477 Query: 125 cgacgtgttcggcg 138 ||||||| |||||| Sbjct: 31145478 cgacgtgctcggcg 31145491 Score = 63.9 bits (32), Expect = 1e-07 Identities = 101/124 (81%) Strand = Plus / Plus Query: 15 gacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatcatcccg 74 ||||||||||||||| |||||||||| ||||| | | | || | |||||| ||| |||| Sbjct: 31150253 gacacggacatgtccatggaggcccaggagttgaggcatgtcctcgacgagctcaacccg 31150312 Query: 75 tacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgacgtgttc 134 ||||||| |||||| |||||| ||| |||||| | | |||||||||||||||||| Sbjct: 31150313 cttatcggcgcggccaacctgtgggattacttgccggcgctccggtggttcgacgtgttc 31150372 Query: 135 ggcg 138 |||| Sbjct: 31150373 ggcg 31150376 Score = 63.9 bits (32), Expect = 1e-07 Identities = 101/124 (81%) Strand = Plus / Plus Query: 15 gacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatcatcccg 74 ||||||||||||||| |||| ||||| |||| |||| |||| || || |||||| || | Sbjct: 31133061 gacacggacatgtccatggaagcccaggagtacaagcaggtcgtcgaggagatcctcgag 31133120 Query: 75 tacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgacgtgttc 134 | ||||| | | |||| ||| ||||||||||||| | | |||||||||||||||||| Sbjct: 31133121 cgcatcggcacgggcaacctgtgcgactacctgccggcgctccggtggttcgacgtgttc 31133180 Query: 135 ggcg 138 |||| Sbjct: 31133181 ggcg 31133184
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 123 bits (62), Expect = 1e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 9 gaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatc 68 ||||| ||||| |||||||||||||| ||||| ||||| ||| |||| || ||||||||| Sbjct: 60831 gacccggacaccgacatgtccgtggaagcccaggagtttaagcaggtcgtcgacgagatc 60890 Query: 69 atcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgac 128 |||||| || ||||||| |||||| |||||||||| |||||| | | |||||||||||| Sbjct: 60891 atcccgcacatcggcgcggccaacctgtgggactacttgccggcgctccggtggttcgac 60950 Query: 129 gtgttcggcg 138 |||||||||| Sbjct: 60951 gtgttcggcg 60960 Score = 83.8 bits (42), Expect = 1e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 5 ggacgaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacga 64 ||||||| | |||||||||||||||||||||||||| ||||||||||| || | ||||| Sbjct: 65999 ggacgacgcggacacggacatgtccgtggaggcccaggagttcaagaatgtcctcgacga 66058 Query: 65 gatcatcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggtt 124 | ||| |||| |||||||| |||||| |||||| ||| |||||| | | ||| ||| Sbjct: 66059 gctcaacccgcttctcggcgcggccaacctgtgggattacttgccggcgctccgggtgtt 66118 Query: 125 cgacgtgttcggcg 138 ||||||| |||||| Sbjct: 66119 cgacgtgctcggcg 66132 Score = 63.9 bits (32), Expect = 1e-07 Identities = 101/124 (81%) Strand = Plus / Plus Query: 15 gacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatcatcccg 74 ||||||||||||||| |||||||||| ||||| | | | || | |||||| ||| |||| Sbjct: 70894 gacacggacatgtccatggaggcccaggagttgaggcatgtcctcgacgagctcaacccg 70953 Query: 75 tacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgacgtgttc 134 ||||||| |||||| |||||| ||| |||||| | | |||||||||||||||||| Sbjct: 70954 cttatcggcgcggccaacctgtgggattacttgccggcgctccggtggttcgacgtgttc 71013 Query: 135 ggcg 138 |||| Sbjct: 71014 ggcg 71017 Score = 63.9 bits (32), Expect = 1e-07 Identities = 101/124 (81%) Strand = Plus / Plus Query: 15 gacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatcatcccg 74 ||||||||||||||| |||| ||||| |||| |||| |||| || || |||||| || | Sbjct: 53702 gacacggacatgtccatggaagcccaggagtacaagcaggtcgtcgaggagatcctcgag 53761 Query: 75 tacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgacgtgttc 134 | ||||| | | |||| ||| ||||||||||||| | | |||||||||||||||||| Sbjct: 53762 cgcatcggcacgggcaacctgtgcgactacctgccggcgctccggtggttcgacgtgttc 53821 Query: 135 ggcg 138 |||| Sbjct: 53822 ggcg 53825
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 123 bits (62), Expect = 1e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 9 gaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatc 68 ||||| ||||| |||||||||||||| ||||| ||||| ||| |||| || ||||||||| Sbjct: 31230713 gacccggacaccgacatgtccgtggaagcccaggagtttaagcaggtcgtcgacgagatc 31230772 Query: 69 atcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgac 128 |||||| || ||||||| |||||| |||||||||| |||||| | | |||||||||||| Sbjct: 31230773 atcccgcacatcggcgcggccaacctgtgggactacttgccggcgctccggtggttcgac 31230832 Query: 129 gtgttcggcg 138 |||||||||| Sbjct: 31230833 gtgttcggcg 31230842 Score = 83.8 bits (42), Expect = 1e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 5 ggacgaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacga 64 ||||||| | |||||||||||||||||||||||||| ||||||||||| || | ||||| Sbjct: 31235881 ggacgacgcggacacggacatgtccgtggaggcccaggagttcaagaatgtcctcgacga 31235940 Query: 65 gatcatcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggtt 124 | ||| |||| |||||||| |||||| |||||| ||| |||||| | | ||| ||| Sbjct: 31235941 gctcaacccgcttctcggcgcggccaacctgtgggattacttgccggcgctccgggtgtt 31236000 Query: 125 cgacgtgttcggcg 138 ||||||| |||||| Sbjct: 31236001 cgacgtgctcggcg 31236014 Score = 63.9 bits (32), Expect = 1e-07 Identities = 101/124 (81%) Strand = Plus / Plus Query: 15 gacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatcatcccg 74 ||||||||||||||| |||||||||| ||||| | | | || | |||||| ||| |||| Sbjct: 31240776 gacacggacatgtccatggaggcccaggagttgaggcatgtcctcgacgagctcaacccg 31240835 Query: 75 tacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgacgtgttc 134 ||||||| |||||| |||||| ||| |||||| | | |||||||||||||||||| Sbjct: 31240836 cttatcggcgcggccaacctgtgggattacttgccggcgctccggtggttcgacgtgttc 31240895 Query: 135 ggcg 138 |||| Sbjct: 31240896 ggcg 31240899 Score = 63.9 bits (32), Expect = 1e-07 Identities = 101/124 (81%) Strand = Plus / Plus Query: 15 gacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatcatcccg 74 ||||||||||||||| |||| ||||| |||| |||| |||| || || |||||| || | Sbjct: 31223584 gacacggacatgtccatggaagcccaggagtacaagcaggtcgtcgaggagatcctcgag 31223643 Query: 75 tacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgacgtgttc 134 | ||||| | | |||| ||| ||||||||||||| | | |||||||||||||||||| Sbjct: 31223644 cgcatcggcacgggcaacctgtgcgactacctgccggcgctccggtggttcgacgtgttc 31223703 Query: 135 ggcg 138 |||| Sbjct: 31223704 ggcg 31223707
>gb|DQ341412.1| Oryza sativa (indica cultivar-group) bentazon and sulfonylurea-resistant protein (Bel) gene, promoter region and complete cds Length = 4187 Score = 123 bits (62), Expect = 1e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 9 gaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatc 68 ||||| ||||| |||||||||||||| ||||| ||||| ||| |||| || ||||||||| Sbjct: 1966 gacccggacaccgacatgtccgtggaagcccaggagtttaagcaggtcgtcgacgagatc 2025 Query: 69 atcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgac 128 |||||| || ||||||| |||||| |||||||||| |||||| | | |||||||||||| Sbjct: 2026 atcccgcacatcggcgcggccaacctgtgggactacttgccggcgctccggtggttcgac 2085 Query: 129 gtgttcggcg 138 |||||||||| Sbjct: 2086 gtgttcggcg 2095
>dbj|AK104825.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F09, full insert sequence Length = 1860 Score = 123 bits (62), Expect = 1e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 9 gaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatc 68 ||||| ||||| |||||||||||||| ||||| ||||| ||| |||| || ||||||||| Sbjct: 659 gacccggacaccgacatgtccgtggaagcccaggagtttaagcaggtcgtcgacgagatc 718 Query: 69 atcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgac 128 |||||| || ||||||| |||||| |||||||||| |||||| | | |||||||||||| Sbjct: 719 atcccgcacatcggcgcggccaacctgtgggactacttgccggcgctccggtggttcgac 778 Query: 129 gtgttcggcg 138 |||||||||| Sbjct: 779 gtgttcggcg 788
>dbj|AK066760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075G04, full insert sequence Length = 1867 Score = 123 bits (62), Expect = 1e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 9 gaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatc 68 ||||| ||||| |||||||||||||| ||||| ||||| ||| |||| || ||||||||| Sbjct: 660 gacccggacaccgacatgtccgtggaagcccaggagtttaagcaggtcgtcgacgagatc 719 Query: 69 atcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgac 128 |||||| || ||||||| |||||| |||||||||| |||||| | | |||||||||||| Sbjct: 720 atcccgcacatcggcgcggccaacctgtgggactacttgccggcgctccggtggttcgac 779 Query: 129 gtgttcggcg 138 |||||||||| Sbjct: 780 gtgttcggcg 789
>ref|XM_469851.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1584 Score = 83.8 bits (42), Expect = 1e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 5 ggacgaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacga 64 ||||||| | |||||||||||||||||||||||||| ||||||||||| || | ||||| Sbjct: 633 ggacgacgcggacacggacatgtccgtggaggcccaggagttcaagaatgtcctcgacga 692 Query: 65 gatcatcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggtt 124 | ||| |||| |||||||| |||||| |||||| ||| |||||| | | ||| ||| Sbjct: 693 gctcaacccgcttctcggcgcggccaacctgtgggattacttgccggcgctccgggtgtt 752 Query: 125 cgacgtgttcggcg 138 ||||||| |||||| Sbjct: 753 cgacgtgctcggcg 766
>dbj|AK059895.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-E05, full insert sequence Length = 1191 Score = 83.8 bits (42), Expect = 1e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 5 ggacgaccccgacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacga 64 ||||||| | |||||||||||||||||||||||||| ||||||||||| || | ||||| Sbjct: 664 ggacgacgcggacacggacatgtccgtggaggcccaggagttcaagaatgtcctcgacga 723 Query: 65 gatcatcccgtacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggtt 124 | ||| |||| |||||||| |||||| |||||| ||| |||||| | | ||| ||| Sbjct: 724 gctcaacccgcttctcggcgcggccaacctgtgggattacttgccggcgctccgggtgtt 783 Query: 125 cgacgtgttcggcg 138 ||||||| |||||| Sbjct: 784 cgacgtgctcggcg 797
>gb|AY109406.1| Zea mays CL377_1 mRNA sequence Length = 1784 Score = 69.9 bits (35), Expect = 2e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 96 tgggactacctgccggtgatgcggtggttcgacgtgttcggcg 138 |||||||||||||||||| |||| ||||||||||||||||||| Sbjct: 776 tgggactacctgccggtgctgcgctggttcgacgtgttcggcg 818
>ref|XM_469852.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1557 Score = 63.9 bits (32), Expect = 1e-07 Identities = 101/124 (81%) Strand = Plus / Plus Query: 15 gacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatcatcccg 74 ||||||||||||||| |||||||||| ||||| | | | || | |||||| ||| |||| Sbjct: 613 gacacggacatgtccatggaggcccaggagttgaggcatgtcctcgacgagctcaacccg 672 Query: 75 tacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgacgtgttc 134 ||||||| |||||| |||||| ||| |||||| | | |||||||||||||||||| Sbjct: 673 cttatcggcgcggccaacctgtgggattacttgccggcgctccggtggttcgacgtgttc 732 Query: 135 ggcg 138 |||| Sbjct: 733 ggcg 736
>ref|XM_469849.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1539 Score = 63.9 bits (32), Expect = 1e-07 Identities = 101/124 (81%) Strand = Plus / Plus Query: 15 gacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatcatcccg 74 ||||||||||||||| |||| ||||| |||| |||| |||| || || |||||| || | Sbjct: 622 gacacggacatgtccatggaagcccaggagtacaagcaggtcgtcgaggagatcctcgag 681 Query: 75 tacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgacgtgttc 134 | ||||| | | |||| ||| ||||||||||||| | | |||||||||||||||||| Sbjct: 682 cgcatcggcacgggcaacctgtgcgactacctgccggcgctccggtggttcgacgtgttc 741 Query: 135 ggcg 138 |||| Sbjct: 742 ggcg 745
>dbj|AK107231.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E04, full insert sequence Length = 1630 Score = 63.9 bits (32), Expect = 1e-07 Identities = 101/124 (81%) Strand = Plus / Plus Query: 15 gacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatcatcccg 74 ||||||||||||||| |||| ||||| |||| |||| |||| || || |||||| || | Sbjct: 647 gacacggacatgtccatggaagcccaggagtacaagcaggtcgtcgaggagatcctcgag 706 Query: 75 tacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgacgtgttc 134 | ||||| | | |||| ||| ||||||||||||| | | |||||||||||||||||| Sbjct: 707 cgcatcggcacgggcaacctgtgcgactacctgccggcgctccggtggttcgacgtgttc 766 Query: 135 ggcg 138 |||| Sbjct: 767 ggcg 770
>dbj|AK100633.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109P12, full insert sequence Length = 1906 Score = 63.9 bits (32), Expect = 1e-07 Identities = 101/124 (81%) Strand = Plus / Plus Query: 15 gacacggacatgtccgtggaggcccaagagttcaagaaggtggtggacgagatcatcccg 74 ||||||||||||||| |||||||||| ||||| | | | || | |||||| ||| |||| Sbjct: 632 gacacggacatgtccatggaggcccaggagttgaggcatgtcctcgacgagctcaacccg 691 Query: 75 tacctcggcgccgccaacacgtgggactacctgccggtgatgcggtggttcgacgtgttc 134 ||||||| |||||| |||||| ||| |||||| | | |||||||||||||||||| Sbjct: 692 cttatcggcgcggccaacctgtgggattacttgccggcgctccggtggttcgacgtgttc 751 Query: 135 ggcg 138 |||| Sbjct: 752 ggcg 755
>ref|XM_556516.1| Anopheles gambiae str. PEST ENSANGP00000027104 (ENSANGG00000014912), partial mRNA Length = 1296 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Plus Query: 44 gttcaagaaggtggtggacgag 65 |||||||||||||||||||||| Sbjct: 825 gttcaagaaggtggtggacgag 846
>ref|XM_315870.2| Anopheles gambiae str. PEST ENSANGP00000017401 (ENSANGG00000014912), partial mRNA Length = 2481 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Plus Query: 44 gttcaagaaggtggtggacgag 65 |||||||||||||||||||||| Sbjct: 1665 gttcaagaaggtggtggacgag 1686
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 0.42 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 gaggacgaccccgacacggac 23 ||||||||||||||||||||| Sbjct: 874276 gaggacgaccccgacacggac 874256
>gb|BT018119.1| Zea mays clone EL01N0554A10.c mRNA sequence Length = 761 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 ggactacctgccggtgatg 116 ||||||||||||||||||| Sbjct: 162 ggactacctgccggtgatg 180
>ref|XM_953692.1| Neurospora crassa OR74A hypothetical protein (NCU05941.1) partial mRNA Length = 918 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 aggtggtggacgagatcat 70 ||||||||||||||||||| Sbjct: 73 aggtggtggacgagatcat 91
>ref|XM_325795.1| Neurospora crassa OR74A hypothetical protein (NCU05941.1) partial mRNA Length = 918 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 aggtggtggacgagatcat 70 ||||||||||||||||||| Sbjct: 73 aggtggtggacgagatcat 91
>ref|XM_752731.1| Ustilago maydis 521 hypothetical protein (UM01677.1) partial mRNA Length = 1494 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 aggtggtggacgagatcat 70 ||||||||||||||||||| Sbjct: 599 aggtggtggacgagatcat 617
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 38.2 bits (19), Expect = 6.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 107 gccggtgatgcggtggttcgacg 129 |||||||||||||||| |||||| Sbjct: 632341 gccggtgatgcggtggatcgacg 632363
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 acctcggcgccgccaacac 94 ||||||||||||||||||| Sbjct: 233524 acctcggcgccgccaacac 233506
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 38.2 bits (19), Expect = 6.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 49 agaaggtggtggacgagatcatc 71 |||||||||| |||||||||||| Sbjct: 2797439 agaaggtggtcgacgagatcatc 2797461
>gb|AC025227.6|AC025227 Homo sapiens BAC clone RP11-109G18 from Y, complete sequence Length = 60810 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 caagagttcaagaaggtgg 57 ||||||||||||||||||| Sbjct: 17096 caagagttcaagaaggtgg 17114
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 ggactacctgccggtgatg 116 ||||||||||||||||||| Sbjct: 28100298 ggactacctgccggtgatg 28100316
>gb|AC016749.4|AC016749 Homo sapiens clone RP11-504E20, complete sequence Length = 187117 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 caagagttcaagaaggtgg 57 ||||||||||||||||||| Sbjct: 80443 caagagttcaagaaggtgg 80461
>gb|AC079354.4| Homo sapiens BAC clone RP11-1145F21 from 2, complete sequence Length = 162554 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 gttcaagaaggtggtggac 62 ||||||||||||||||||| Sbjct: 108173 gttcaagaaggtggtggac 108191
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2 (P1-P2-P3-IR2@) on chromosome Y Length = 4538292 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 caagagttcaagaaggtgg 57 ||||||||||||||||||| Sbjct: 407887 caagagttcaagaaggtgg 407905
>gb|AF181661.1|AF181661 Triticum aestivum EF-hand Ca2+-binding protein CCD1 (ccd1) mRNA, complete cds Length = 643 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 ggactacctgccggtgatg 116 ||||||||||||||||||| Sbjct: 114 ggactacctgccggtgatg 132
>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0009H10 Length = 175754 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 ggactacctgccggtgatg 116 ||||||||||||||||||| Sbjct: 31204 ggactacctgccggtgatg 31222
>emb|BX511205.2|RN120J22 Rattus norvegicus chromosome 1 BAC RP32-120J22, complete sequence Length = 160764 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 caagagttcaagaaggtgg 57 ||||||||||||||||||| Sbjct: 91463 caagagttcaagaaggtgg 91481
>dbj|AK112082.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-D12, full insert sequence Length = 677 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 ggactacctgccggtgatg 116 ||||||||||||||||||| Sbjct: 140 ggactacctgccggtgatg 158
>dbj|AK111897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028D20, full insert sequence Length = 663 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 ggactacctgccggtgatg 116 ||||||||||||||||||| Sbjct: 141 ggactacctgccggtgatg 159
>dbj|AK111852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033005P22, full insert sequence Length = 678 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 ggactacctgccggtgatg 116 ||||||||||||||||||| Sbjct: 141 ggactacctgccggtgatg 159
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 gttcaagaaggtggtggac 62 ||||||||||||||||||| Sbjct: 132689 gttcaagaaggtggtggac 132671 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 750,172 Number of Sequences: 3902068 Number of extensions: 750172 Number of successful extensions: 68255 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67658 Number of HSP's gapped (non-prelim): 597 length of query: 138 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 117 effective length of database: 17,151,101,840 effective search space: 2006678915280 effective search space used: 2006678915280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
