ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart55h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DAB_DROME (P98081) Protein disabled 30 2.2
2PAKM_DROME (Q9VXE5) Serine/threonine-protein kinase PAK mbt (EC ... 28 8.4
3TRPS1_XENLA (Q90ZS6) Zinc finger transcription factor Trps1 28 8.4
4BFA1_YEAST (P47113) Mitotic check point protein BFA1 (Cell cycle... 28 8.4

>DAB_DROME (P98081) Protein disabled|
          Length = 2224

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 193 MGAALTLAALWYDPIPMPSSTPMAISHS 110
           +G  L+  AL  DP+P P S P +ISHS
Sbjct: 560 LGQLLSTVALNPDPLPAPISIPTSISHS 587



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>PAKM_DROME (Q9VXE5) Serine/threonine-protein kinase PAK mbt (EC 2.7.11.1)|
           (p21-activated kinase-related protein) (Protein mushroom
           bodies tiny)
          Length = 639

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 355 HHHQHLGAAVGELSATTPSATSSDHQTS 438
           HHHQHL  +    S+++  A+S+  Q S
Sbjct: 303 HHHQHLAKSASRASSSSGGASSAAQQAS 330



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>TRPS1_XENLA (Q90ZS6) Zinc finger transcription factor Trps1|
          Length = 1271

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = +1

Query: 250 CSPCRDANMRVDE---LMDHFPSAGAHDFFPAAPDNGLHH 360
           C  CR  N    +   L+DHF SA   +F     + G HH
Sbjct: 681 CYKCRQCNFTAADTQSLLDHFNSAHCQEFEITTSNGGEHH 720



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>BFA1_YEAST (P47113) Mitotic check point protein BFA1 (Cell cycle arrest|
           protein BFA1)
          Length = 574

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 197 PPVRRLLRLRGCSPFLRDAAHVATP 271
           PPV + ++ R  SPFLR  + V TP
Sbjct: 442 PPVGKSMKKRSSSPFLRSKSQVNTP 466


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,437,895
Number of Sequences: 219361
Number of extensions: 795384
Number of successful extensions: 2968
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2965
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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