ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart55a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GDA5_WHEAT (P04725) Alpha/beta-gliadin A-V precursor (Prolamin) 31 2.9
2AVE3_AVESA (P80356) Avenin-3 precursor (Prolamin) 30 6.5

>GDA5_WHEAT (P04725) Alpha/beta-gliadin A-V precursor (Prolamin)|
          Length = 319

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 224 QLYPALLQPKLQPQNPTMLQGLDQQMLRQLQQNRYRPLNSQMIQK 358
           Q YP      LQPQ P   Q   QQ  +Q QQ + + +  Q++Q+
Sbjct: 103 QPYPQQQPQYLQPQQPISQQQAQQQQQQQQQQQQQQQILQQILQQ 147



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>AVE3_AVESA (P80356) Avenin-3 precursor (Prolamin)|
          Length = 220

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 233 PALLQPKLQPQNPTMLQGLDQQMLRQLQQNRYRPLNSQMIQKGFNTSIQ 379
           P + Q   QPQ   + QG+ Q  ++Q+ Q  ++P   Q+ Q  F   +Q
Sbjct: 136 PQMQQQFFQPQMQQVTQGIFQPQMQQVTQGIFQPQLQQVTQGIFQPQMQ 184


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.124    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,183,603
Number of Sequences: 219361
Number of extensions: 940300
Number of successful extensions: 1732
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1728
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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