ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart54g07 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL671854.14| Mouse DNA sequence from clone RP23-89M15 on chromosome 3, complete sequence Length = 207265 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 507 ggccgggctctccggctccagcgc 530 |||||||||||||||||||||||| Sbjct: 89215 ggccgggctctccggctccagcgc 89238
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 366 tctcgacggcggcggctactacggcggcgtc 396 ||||||||||||||||| || |||||||||| Sbjct: 21914100 tctcgacggcggcggctgctgcggcggcgtc 21914130 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 228 cggcggccgggccgtctccttcgccgtcg 256 |||||||||||||||| || ||||||||| Sbjct: 23480399 cggcggccgggccgtcgccgtcgccgtcg 23480371
>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0006A22 Length = 190690 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 366 tctcgacggcggcggctactacggcggcgtc 396 ||||||||||||||||| || |||||||||| Sbjct: 136585 tctcgacggcggcggctgctgcggcggcgtc 136615
>gb|AC118754.6| Homo sapiens, clone RP11-141J13, complete sequence Length = 185378 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 153 gacggagacggagaaggagatggagc 178 |||||||||||||| ||||||||||| Sbjct: 82050 gacggagacggagacggagatggagc 82025
>ref|XM_709737.1| Candida albicans SC5314 hypothetical protein (CaO19.2239), mRNA Length = 2148 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 145 gtgatggtgacggagacggagaaggagatggag 177 |||||||||| ||||| ||||||||||| |||| Sbjct: 1931 gtgatggtgatggagaaggagaaggagaaggag 1963
>ref|XM_709677.1| Candida albicans SC5314 hypothetical protein (CaO19.9781), mRNA Length = 2148 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 145 gtgatggtgacggagacggagaaggagatggag 177 |||||||||| ||||| ||||||||||| |||| Sbjct: 1931 gtgatggtgatggagaaggagaaggagaaggag 1963
>ref|XM_989726.1| PREDICTED: Mus musculus similar to myosin, heavy polypeptide 4, skeletal muscle (LOC671894), mRNA Length = 5573 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 cggagacggagaaggagatgg 175 ||||||||||||||||||||| Sbjct: 2754 cggagacggagaaggagatgg 2774
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 390 cggcgtccggctgctgctggccatc 414 |||||||| |||||||||||||||| Sbjct: 875282 cggcgtcctgctgctgctggccatc 875306
>ref|XM_539495.2| PREDICTED: Canis familiaris similar to Carboxypeptidase N subunit 2 precursor (Carboxypeptidase N polypeptide 2) (Carboxypeptidase N 83 kDa chain) (Carboxypeptidase N regulatory subunit) (Carboxypeptidase N large subunit) (LOC482378), mRNA Length = 2748 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 255 cgccagcctctgggccaccgtccgc 279 |||| |||||||||||||||||||| Sbjct: 1907 cgcctgcctctgggccaccgtccgc 1931
>gb|AC126805.4| Mus musculus BAC clone RP23-109A15 from 13, complete sequence Length = 177083 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 153 gacggagacggagaaggagatggag 177 |||||||||||||||||||| |||| Sbjct: 41114 gacggagacggagaaggagaaggag 41090
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16 Length = 348642 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 518 ccggctccagcgccatcgtctgcgc 542 ||||||||||||||| ||||||||| Sbjct: 163018 ccggctccagcgccagcgtctgcgc 163042
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 518 ccggctccagcgccatcgtctgcgc 542 ||||||||||||||| ||||||||| Sbjct: 5180 ccggctccagcgccagcgtctgcgc 5156
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12 Length = 348934 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 518 ccggctccagcgccatcgtctgcgc 542 ||||||||||||||| ||||||||| Sbjct: 251885 ccggctccagcgccagcgtctgcgc 251909
>gb|AC124968.36| Medicago truncatula clone mth2-15e21, complete sequence Length = 106968 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 cggagacggagaaggagatgg 175 ||||||||||||||||||||| Sbjct: 33705 cggagacggagaaggagatgg 33725
>gb|AC153549.5| Mus musculus 10 BAC RP23-222O23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 217249 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 153 gacggagacggagaaggagatggag 177 |||||||||||||||||||| |||| Sbjct: 46487 gacggagacggagaaggagagggag 46463
>dbj|AK137508.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830121K03 product:myosin, heavy polypeptide 7, cardiac muscle, beta, full insert sequence Length = 3706 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 cggagacggagaaggagatgg 175 ||||||||||||||||||||| Sbjct: 2065 cggagacggagaaggagatgg 2085
>dbj|AK147031.1| Mus musculus 16 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920089F07 product:myosin, heavy polypeptide 7, cardiac muscle, beta, full insert sequence Length = 6055 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 cggagacggagaaggagatgg 175 ||||||||||||||||||||| Sbjct: 2670 cggagacggagaaggagatgg 2690
>dbj|AK157742.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130014J15 product:myosin, heavy polypeptide 7, cardiac muscle, beta, full insert sequence Length = 3118 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 cggagacggagaaggagatgg 175 ||||||||||||||||||||| Sbjct: 2670 cggagacggagaaggagatgg 2690
>dbj|AK168677.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920043K12 product:myosin, heavy polypeptide 7, cardiac muscle, beta, full insert sequence Length = 4085 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 cggagacggagaaggagatgg 175 ||||||||||||||||||||| Sbjct: 700 cggagacggagaaggagatgg 720
>dbj|AK168593.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920037G08 product:myosin, heavy polypeptide 7, cardiac muscle, beta, full insert sequence Length = 3823 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 cggagacggagaaggagatgg 175 ||||||||||||||||||||| Sbjct: 439 cggagacggagaaggagatgg 459
>dbj|AK169371.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920193B18 product:myosin, heavy polypeptide 7, cardiac muscle, beta, full insert sequence Length = 6054 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 cggagacggagaaggagatgg 175 ||||||||||||||||||||| Sbjct: 2669 cggagacggagaaggagatgg 2689
>dbj|AK169198.1| Mus musculus 16 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920089H17 product:myosin, heavy polypeptide 7, cardiac muscle, beta, full insert sequence Length = 6054 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 cggagacggagaaggagatgg 175 ||||||||||||||||||||| Sbjct: 2669 cggagacggagaaggagatgg 2689
>gb|AC153130.4| Mus musculus BAC clone RP24-252F22 from chromosome 13, complete sequence Length = 186412 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 153 gacggagacggagaaggagatggag 177 |||||||||||||||||||| |||| Sbjct: 141384 gacggagacggagaaggagaaggag 141360
>dbj|AK040973.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530053K13 product:myosin, heavy polypeptide 7, cardiac muscle, beta, full insert sequence Length = 3036 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 cggagacggagaaggagatgg 175 ||||||||||||||||||||| Sbjct: 2671 cggagacggagaaggagatgg 2691
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 153 gacggagacggagaaggagatggag 177 |||||||||||||| |||||||||| Sbjct: 21405615 gacggagacggagacggagatggag 21405591 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 acgacctcgtcgccttcccc 342 |||||||||||||||||||| Sbjct: 17511182 acgacctcgtcgccttcccc 17511163
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 tccgcctccgcccctccgccg 295 ||||||||||||||||||||| Sbjct: 34671417 tccgcctccgcccctccgccg 34671437
>gb|AC007723.5|AC007723 Drosophila melanogaster, chromosome 3R, region 87F-87F, BAC clone BACR01E10, complete sequence Length = 160972 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 153 gacggagacggagaaggagatggag 177 |||||||||||||| |||||||||| Sbjct: 99296 gacggagacggagatggagatggag 99320
>gb|AC008142.2|AC008142 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone BACR48D03, complete sequence Length = 175917 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 147 gatggtgacggagacggagaaggagatgg 175 ||||| |||||||||||||| |||||||| Sbjct: 64854 gatggagacggagacggagatggagatgg 64826
>gb|AC157212.2| Mus musculus BAC clone RP23-171A13 from chromosome 14, complete sequence Length = 217099 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 cggagacggagaaggagatgg 175 ||||||||||||||||||||| Sbjct: 33167 cggagacggagaaggagatgg 33147
>dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0085D07 Length = 172483 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 tccgcctccgcccctccgccg 295 ||||||||||||||||||||| Sbjct: 123434 tccgcctccgcccctccgccg 123454
>gb|AC159292.3| Mus musculus BAC clone RP23-290D9 from chromosome 10, complete sequence Length = 224627 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 153 gacggagacggagaaggagatggag 177 |||||||| |||||||||||||||| Sbjct: 47499 gacggagagggagaaggagatggag 47475
>gb|AC069141.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-23G24, complete sequence Length = 197264 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 153 gacggagacggagaaggagatggag 177 |||||||||||||| |||||||||| Sbjct: 97660 gacggagacggagacggagatggag 97684
>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1210_A07 Length = 131394 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 153 gacggagacggagaaggagatggag 177 |||||||||||||| |||||||||| Sbjct: 22720 gacggagacggagacggagatggag 22696
>dbj|AP003615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0486H12 Length = 179085 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 228 cggcggccgggccgtctccttcgccgtcg 256 |||||||||||||||| || ||||||||| Sbjct: 139954 cggcggccgggccgtcgccgtcgccgtcg 139926
>dbj|AK073519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041M07, full insert sequence Length = 3161 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 tccgcctccgcccctccgccg 295 ||||||||||||||||||||| Sbjct: 125 tccgcctccgcccctccgccg 145
>gb|AE003727.3| Drosophila melanogaster chromosome 3R, section 65 of 118 of the complete sequence Length = 242618 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 147 gatggtgacggagacggagaaggagatgg 175 ||||| |||||||||||||| |||||||| Sbjct: 160468 gatggagacggagacggagatggagatgg 160440
>gb|AE003700.3| Drosophila melanogaster chromosome 3R, section 38 of 118 of the complete sequence Length = 228324 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 153 gacggagacggagaaggagatggag 177 |||||||||||||| |||||||||| Sbjct: 186370 gacggagacggagatggagatggag 186394
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 502 cgccaggccgggctctccggctccagcgc 530 |||||||||||| | |||||||||||||| Sbjct: 1467027 cgccaggccggggtatccggctccagcgc 1467055
>ref|NM_113531.2| Arabidopsis thaliana unknown protein AT3G26240 mRNA, complete cds Length = 3304 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 atggtgacggagacggagaaggag 171 ||||||||||||||||||| |||| Sbjct: 213 atggtgacggagacggagacggag 236
>ref|NM_116438.1| Arabidopsis thaliana MSH6 AT4G02070 (MSH6) mRNA, complete cds Length = 3975 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 gatggtgacggagacggaga 166 |||||||||||||||||||| Sbjct: 191 gatggtgacggagacggaga 172
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 tcatcgtcatcggcggaggc 130 |||||||||||||||||||| Sbjct: 3037929 tcatcgtcatcggcggaggc 3037948
>ref|XM_479178.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1701 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ggcggaggcggcgagcggcg 141 |||||||||||||||||||| Sbjct: 111 ggcggaggcggcgagcggcg 92
>ref|XM_472588.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1281 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 cggcggcgtccggctgctgc 406 |||||||||||||||||||| Sbjct: 340 cggcggcgtccggctgctgc 321
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 cggatcatcgtcatcggcgg 126 |||||||||||||||||||| Sbjct: 1467584 cggatcatcgtcatcggcgg 1467565
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 tcatcgtcatcggcggaggc 130 |||||||||||||||||||| Sbjct: 3038105 tcatcgtcatcggcggaggc 3038124
>gb|AC096997.3| Takifugu rubripes clone 217A23, complete sequence Length = 74841 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 tggtgacggagacggagaag 168 |||||||||||||||||||| Sbjct: 55504 tggtgacggagacggagaag 55485
>gb|BC076706.1| Xenopus tropicalis MGC79783 protein, mRNA (cDNA clone MGC:79783 IMAGE:6985890), complete cds Length = 843 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 acaaccactgcaaggacaac 447 |||||||||||||||||||| Sbjct: 689 acaaccactgcaaggacaac 670
>gb|AC110180.10| Mus musculus chromosome 19, clone RP24-358B11, complete sequence Length = 144511 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 401 tgctgctggccatctgcagggtct 424 ||||||||||||| |||||||||| Sbjct: 137859 tgctgctggccatgtgcagggtct 137836
>gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668F02, complete sequence Length = 178061 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ggcggaggcggcgagcggcg 141 |||||||||||||||||||| Sbjct: 25271 ggcggaggcggcgagcggcg 25252
>ref|XM_866583.1| PREDICTED: Bos taurus similar to amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13 (LOC614932), mRNA Length = 1770 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 267 ggccaccgtccgcctccgcccctc 290 ||||||||| |||||||||||||| Sbjct: 1123 ggccaccgtgcgcctccgcccctc 1146
>ref|XM_366759.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG02835.4) partial mRNA Length = 876 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 cggcggctactacggcggcg 394 |||||||||||||||||||| Sbjct: 615 cggcggctactacggcggcg 634
>ref|XM_414620.1| PREDICTED: Gallus gallus similar to heterogeneous nuclear ribonucleoprotein A0; hnRNA binding protein (LOC416302), mRNA Length = 3069 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 371 acggcggcggctactacggcggcg 394 |||||||||||| ||||||||||| Sbjct: 1502 acggcggcggctcctacggcggcg 1525
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 146 tgatggtgacggagacggagaaggagatggag 177 |||||| |||||||||||||| ||||| |||| Sbjct: 1832514 tgatggagacggagacggagacggagacggag 1832483
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 cggcggcgtccggctgctgc 406 |||||||||||||||||||| Sbjct: 4725921 cggcggcgtccggctgctgc 4725940
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 atcagtggttaagtccacca 99 |||||||||||||||||||| Sbjct: 501240 atcagtggttaagtccacca 501221
>gb|AC139223.8| Mus musculus chromosome 8, clone RP24-322F24, complete sequence Length = 180051 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gacggagacggagaaggaga 172 |||||||||||||||||||| Sbjct: 55786 gacggagacggagaaggaga 55805
>ref|XM_847618.1| PREDICTED: Canis familiaris similar to C3 and PZP-like, alpha-2-macroglobulin domain containing 8 (LOC484845), mRNA Length = 5241 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 tcatcgtcatcggcggaggcggcg 134 ||||||||||| |||||||||||| Sbjct: 4589 tcatcgtcatcagcggaggcggcg 4566
>ref|XM_535406.2| PREDICTED: Canis familiaris similar to F-box only protein 2 (LOC478231), mRNA Length = 1826 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ggcggaggcggcgagcggcg 141 |||||||||||||||||||| Sbjct: 696 ggcggaggcggcgagcggcg 715
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 gatcgtctcgacggcggcgg 380 |||||||||||||||||||| Sbjct: 4093813 gatcgtctcgacggcggcgg 4093832
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 146 tgatggtgacggagacggagaaggagatggag 177 |||||| |||||||||||||| ||||| |||| Sbjct: 3166403 tgatggagacggagacggagacggagacggag 3166372
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 acgacctcgtcgccttcccc 342 |||||||||||||||||||| Sbjct: 96998 acgacctcgtcgccttcccc 97017
>emb|AL391145.1|ATF1N13 Arabidopsis thaliana DNA chromosome 5, BAC clone F1N13 (ESSA project) Length = 74687 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gacggagacggagaaggaga 172 |||||||||||||||||||| Sbjct: 4466 gacggagacggagaaggaga 4485
>emb|AL161493.2|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 5 Length = 198220 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 gatggtgacggagacggaga 166 |||||||||||||||||||| Sbjct: 135138 gatggtgacggagacggaga 135119
>emb|AJ245967.1|ATH245967 Arabidopsis thaliana msh6-1 gene for mismatch repair protein msh6-1 Length = 7080 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 gatggtgacggagacggaga 166 |||||||||||||||||||| Sbjct: 254 gatggtgacggagacggaga 235
>gb|AC120387.5| Mus musculus chromosome 8, clone RP24-299O22, complete sequence Length = 163623 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 gacggagacggagaaggaga 172 |||||||||||||||||||| Sbjct: 26133 gacggagacggagaaggaga 26114
>gb|AC093438.2| Drosophila melanogaster 3L BAC RP98-26C20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167344 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 tgacggagacggagaaggagatgg 175 ||||||||||||||| |||||||| Sbjct: 160310 tgacggagacggagacggagatgg 160287
>gb|AF476111.1| Drosophila pseudoobscura CG15611-like protein gene, partial cds; CG15605-like protein gene, complete cds; and CG15918-like protein gene, partial cds Length = 12592 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 gatggtgacggagacggagaagga 170 ||||| |||||||||||||||||| Sbjct: 7734 gatggagacggagacggagaagga 7757
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 gccggatcatcgtcatcggc 124 |||||||||||||||||||| Sbjct: 1187538 gccggatcatcgtcatcggc 1187519
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 gcgacgtgtacggcggccgggccg 241 |||||| ||||||||||||||||| Sbjct: 3393605 gcgacgggtacggcggccgggccg 3393582
>gb|AC174221.4| Mus musculus BAC clone RP24-237K1 from chromosome y, complete sequence Length = 171789 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 147 gatggtgacggagacggagaaggagatggagc 178 ||||| || ||||||||||| ||||||||||| Sbjct: 20920 gatggagatggagacggagacggagatggagc 20889
>gb|AC091223.2| Drosophila melanogaster 3L BAC RP98-48G6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170988 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 tgacggagacggagaaggagatgg 175 ||||||||||||||| |||||||| Sbjct: 51196 tgacggagacggagacggagatgg 51173
>gb|AC155939.6| Mus musculus 10 BAC RP24-418P10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 158211 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 153 gacggagacggagaaggagatggagcgc 180 |||||||||||||| ||||| ||||||| Sbjct: 64787 gacggagacggagagggagagggagcgc 64760
>gb|AC012646.6|AC012646 Drosophila melanogaster, chromosome 3R, region 85A-85B, BAC clone BACR03F16, complete sequence Length = 204681 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 acggagacggagaaggagatggag 177 ||||||||||||| |||||||||| Sbjct: 189452 acggagacggagacggagatggag 189429
>gb|AC009539.6|AC009539 Drosophila melanogaster, chromosome 3R, region 85A-85A, BAC clone BACR33N15, complete sequence Length = 187701 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 acggagacggagaaggagatggag 177 ||||||||||||| |||||||||| Sbjct: 62889 acggagacggagacggagatggag 62866
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 cggcggcgtccggctgctgc 406 |||||||||||||||||||| Sbjct: 21754841 cggcggcgtccggctgctgc 21754822
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ggcggaggcggcgagcggcg 141 |||||||||||||||||||| Sbjct: 26791182 ggcggaggcggcgagcggcg 26791163 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ggcggaggcggcgagcggcg 141 |||||||||||||||||||| Sbjct: 25548172 ggcggaggcggcgagcggcg 25548153
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ggcggaggcggcgagcggcg 141 |||||||||||||||||||| Sbjct: 19884107 ggcggaggcggcgagcggcg 19884088
>ref|NM_001005025.1| Xenopus tropicalis MGC79783 protein (MGC79783), mRNA Length = 843 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 acaaccactgcaaggacaac 447 |||||||||||||||||||| Sbjct: 689 acaaccactgcaaggacaac 670
>dbj|AB043957.1| Ceratopteris richardii mRNA for CRKNOX3, complete cds Length = 1933 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 cagccggatcatcgtcatcg 122 |||||||||||||||||||| Sbjct: 1124 cagccggatcatcgtcatcg 1105
>ref|XM_575276.1| PREDICTED: Rattus norvegicus similar to Src-like adaptor protein-2 (LOC499931), mRNA Length = 1387 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 335 ccttcccctccctacacgccctggtgga 362 |||||||||| || |||||||||||||| Sbjct: 833 ccttcccctcactccacgccctggtgga 860
>gb|AY190951.1| Drosophila willistoni clone DWIF01_10_N12 (D1470) genomic sequence Length = 35954 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 gatggtgacggagacggaga 166 |||||||||||||||||||| Sbjct: 30324 gatggtgacggagacggaga 30343
>gb|AY190948.1| Drosophila pseudoobscura clone DPSF01_06_H12 (D1436) genomic sequence Length = 43025 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 gacggagacggagaaggaga 172 |||||||||||||||||||| Sbjct: 26245 gacggagacggagaaggaga 26226
>gb|AC148974.5| Mus musculus BAC clone RP24-165K23 from chromosome y, complete sequence Length = 200783 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 147 gatggtgacggagacggagaaggagatggagc 178 ||||| || ||||||||||| ||||||||||| Sbjct: 80161 gatggagatggagacggagacggagatggagc 80192
>gb|AC145250.3| Macropus eugenii clone ME_KBa-232I1, complete sequence Length = 126347 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 atcagtggttaagtccacca 99 |||||||||||||||||||| Sbjct: 51197 atcagtggttaagtccacca 51178
>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0594D10 Length = 143200 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ggcggaggcggcgagcggcg 141 |||||||||||||||||||| Sbjct: 2145 ggcggaggcggcgagcggcg 2126
>dbj|AP005755.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0019B14 Length = 127570 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 acgacctcgtcgccttcccc 342 |||||||||||||||||||| Sbjct: 75360 acgacctcgtcgccttcccc 75341
>dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1003_C06 Length = 143168 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ggcggaggcggcgagcggcg 141 |||||||||||||||||||| Sbjct: 138039 ggcggaggcggcgagcggcg 138020
>dbj|AP004309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0560B08 Length = 128098 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ggcggaggcggcgagcggcg 141 |||||||||||||||||||| Sbjct: 85442 ggcggaggcggcgagcggcg 85423
>dbj|AP003832.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1458_B07 Length = 99415 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ggcggaggcggcgagcggcg 141 |||||||||||||||||||| Sbjct: 37356 ggcggaggcggcgagcggcg 37337
>dbj|AB024038.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MTC11 Length = 83859 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 atggtgacggagacggagaaggag 171 ||||||||||||||||||| |||| Sbjct: 54617 atggtgacggagacggagacggag 54594
>dbj|AK121053.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055N06, full insert sequence Length = 2311 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ggcggaggcggcgagcggcg 141 |||||||||||||||||||| Sbjct: 40 ggcggaggcggcgagcggcg 21
>dbj|AK121647.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058N21, full insert sequence Length = 1800 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 cggcggcgtccggctgctgc 406 |||||||||||||||||||| Sbjct: 740 cggcggcgtccggctgctgc 721
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 ctccttcgccgtcgccagcctctg 266 |||||||||||||||| ||||||| Sbjct: 2673453 ctccttcgccgtcgccggcctctg 2673476
>dbj|AK064123.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-C10, full insert sequence Length = 1704 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ggcggaggcggcgagcggcg 141 |||||||||||||||||||| Sbjct: 111 ggcggaggcggcgagcggcg 92
>gb|AF088856.1|AF088856 Vogesella indigofera indigoidine biosynthesis locus, complete sequence Length = 10249 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 391 ggcgtccggctgctgctggccatc 414 ||||||| |||||||||||||||| Sbjct: 8277 ggcgtcctgctgctgctggccatc 8300
>gb|AE003678.3| Drosophila melanogaster chromosome 3R, section 16 of 118 of the complete sequence Length = 244757 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 154 acggagacggagaaggagatggag 177 ||||||||||||| |||||||||| Sbjct: 198992 acggagacggagacggagatggag 199015
>gb|AE003541.3| Drosophila melanogaster chromosome 3L, section 44 of 83 of the complete sequence Length = 265524 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 tgacggagacggagaaggagatgg 175 ||||||||||||||| |||||||| Sbjct: 171348 tgacggagacggagacggagatgg 171325
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 443 acaacggcatcgccctggaggaca 466 |||||||||||||| ||||||||| Sbjct: 2509464 acaacggcatcgccgtggaggaca 2509441
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaggcggcgagcggcgtcc 144 |||||||||||||||||||| Sbjct: 723425 ggaggcggcgagcggcgtcc 723444 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 tcatcgtcatcggcggaggc 130 |||||||||||||||||||| Sbjct: 27952 tcatcgtcatcggcggaggc 27933
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 gggcctcctgggcaacccca 217 |||||||||||||||||||| Sbjct: 1123857 gggcctcctgggcaacccca 1123838
>emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006B20, complete sequence Length = 141915 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 cggcggcgtccggctgctgc 406 |||||||||||||||||||| Sbjct: 66458 cggcggcgtccggctgctgc 66439
>gb|AF001535.1|ATAF001535 Arabidopsis thaliana chromosome IV cosmid AGAA, complete sequence Length = 27502 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 gatggtgacggagacggaga 166 |||||||||||||||||||| Sbjct: 7040 gatggtgacggagacggaga 7021
>dbj|AB240063.1| Streptomyces lavendulae subsp. lavendulae orfA, bpsA, bpsB, bpsC genes for Ribose-phosphate pyrophosphokinase, Blue-pigment synthetase, Putative pathway-specific transcriptional activator, S-adenosylmethionine synthetase, partial and complete cds Length = 5913 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 acggagacggagaaggagat 173 |||||||||||||||||||| Sbjct: 3503 acggagacggagaaggagat 3522
>gb|AF001308.1|ATAF001308 Arabidopsis thaliana BAC T10M13 from chromosome IV, from 10.8 cM to 11.6 cM, complete sequence Length = 105654 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 gatggtgacggagacggaga 166 |||||||||||||||||||| Sbjct: 32534 gatggtgacggagacggaga 32515
>gb|U78100.1|PSU78100 Phalaenopsis sp. 'Hybrid SM9108' unknown protein 038 mRNA, complete cds Length = 1270 Score = 40.1 bits (20), Expect = 7.9 Identities = 41/48 (85%) Strand = Plus / Plus Query: 175 gagcgcagggcgtacgcgcgcgtgggcctcctgggcaaccccagcgac 222 |||| |||||||||||| || ||||| || ||||| ||||| |||||| Sbjct: 41 gagcacagggcgtacgctcgtgtggggcttctgggtaaccctagcgac 88 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,418,481 Number of Sequences: 3902068 Number of extensions: 4418481 Number of successful extensions: 153167 Number of sequences better than 10.0: 105 Number of HSP's better than 10.0 without gapping: 106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 150444 Number of HSP's gapped (non-prelim): 2710 length of query: 584 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 561 effective length of database: 17,143,297,704 effective search space: 9617390011944 effective search space used: 9617390011944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
