>NUHM_ARATH (O22769) NADH-ubiquinone oxidoreductase 24 kDa subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
          Length = 255

 Score =  217 bits (553), Expect = 2e-56
 Identities = 98/129 (75%), Positives = 117/129 (90%)
 Frame = +2

Query: 200 TGYFSRTFSSALNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLA 379
           T   +R+ S+ALNYH+DSPDN P++PWEF++AN  KV EILS+YPSNYKQS +IP+LDLA
Sbjct: 21  TSQVTRSLSTALNYHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIPLLDLA 80

Query: 380 QQQHGGWVPVAAMDAIAKIVGVAPIRVYEVATFYSMFNRTKVGKYHLLVCGTTPCMIRGS 559
           QQQ+GGW+PV+AM+A+AK++ VAPIRVYEVATFYSMFNR KVGKYHLLVCGTTPCMIRGS
Sbjct: 81  QQQNGGWLPVSAMNAVAKVIEVAPIRVYEVATFYSMFNRAKVGKYHLLVCGTTPCMIRGS 140

Query: 560 RDIEDALLE 586
           RDIE ALL+
Sbjct: 141 RDIESALLD 149

>NUHM_HUMAN (P19404) NADH-ubiquinone oxidoreductase 24 kDa subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
          Length = 249

 Score =  137 bits (345), Expect = 2e-32
 Identities = 59/117 (50%), Positives = 91/117 (77%)
 Frame = +2

Query: 230 ALNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPV 409
           AL  H D+P+NNP+ P++FT  N +++  I+ +YP  +K + ++P+LDLAQ+Q+G W+P+
Sbjct: 37  ALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPI 95

Query: 410 AAMDAIAKIVGVAPIRVYEVATFYSMFNRTKVGKYHLLVCGTTPCMIRGSRDIEDAL 580
           +AM+ +A+++ V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I +A+
Sbjct: 96  SAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAI 152

>NUHM_BOVIN (P04394) NADH-ubiquinone oxidoreductase 24 kDa subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Polypeptide II)
          Length = 249

 Score =  137 bits (345), Expect = 2e-32
 Identities = 60/117 (51%), Positives = 90/117 (76%)
 Frame = +2

Query: 230 ALNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPV 409
           AL  H D+P+NNP  P++FT  N +++  I+ +YP  +K + ++P+LDLAQ+Q+G W+P+
Sbjct: 37  ALFVHRDTPENNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNG-WLPI 95

Query: 410 AAMDAIAKIVGVAPIRVYEVATFYSMFNRTKVGKYHLLVCGTTPCMIRGSRDIEDAL 580
           +AM+ +A+I+ V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I +A+
Sbjct: 96  SAMNKVAEILQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAI 152

>NUHM_RAT (P19234) NADH-ubiquinone oxidoreductase 24 kDa subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
          Length = 248

 Score =  136 bits (342), Expect = 5e-32
 Identities = 59/117 (50%), Positives = 90/117 (76%)
 Frame = +2

Query: 230 ALNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPV 409
           AL  H D+P+NNP+ P++FT  N E++  I+ +YP  ++ + ++P+LDLAQ+Q+G W+P+
Sbjct: 36  ALFVHRDTPENNPDTPFDFTPENYERIEAIVRNYPEGHRAAAVLPVLDLAQRQNG-WLPI 94

Query: 410 AAMDAIAKIVGVAPIRVYEVATFYSMFNRTKVGKYHLLVCGTTPCMIRGSRDIEDAL 580
           +AM+ +A+++ V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I + L
Sbjct: 95  SAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRDSDSILETL 151

>NUHM_MOUSE (Q9D6J6) NADH-ubiquinone oxidoreductase 24 kDa subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
          Length = 248

 Score =  134 bits (338), Expect = 1e-31
 Identities = 58/117 (49%), Positives = 90/117 (76%)
 Frame = +2

Query: 230 ALNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPV 409
           AL  H D+P+NNP+ P++FT  N +++  I+ +YP  ++ + ++P+LDLAQ+Q+G W+P+
Sbjct: 36  ALFVHRDTPENNPDTPFDFTPENYKRIETIVKNYPEGHQAAAVLPVLDLAQRQNG-WLPI 94

Query: 410 AAMDAIAKIVGVAPIRVYEVATFYSMFNRTKVGKYHLLVCGTTPCMIRGSRDIEDAL 580
           +AM+ +A+++ V P+RVYEVATFY+M+NR  VGKYH+ VC TTPCM+R S  I + L
Sbjct: 95  SAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRDSDSILETL 151

>NUHM_CAEEL (Q20719) NADH-ubiquinone oxidoreductase 24 kDa subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
          Length = 239

 Score =  129 bits (325), Expect = 5e-30
 Identities = 59/119 (49%), Positives = 84/119 (70%)
 Frame = +2

Query: 224 SSALNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWV 403
           ++ L  H D+ +NN N+ ++FT  N E++  I+  YP  +K   +IP+LDLAQ+QHG W+
Sbjct: 24  ATGLMVHRDTKENNLNVKFKFTSENQERIKAIMDIYPEGHKAGALIPLLDLAQRQHG-WL 82

Query: 404 PVAAMDAIAKIVGVAPIRVYEVATFYSMFNRTKVGKYHLLVCGTTPCMIRGSRDIEDAL 580
           P++AM  +AKI+ V  +R YEVATFY+MFNR  VGKY L VC TTPCM+RG+  I + +
Sbjct: 83  PISAMHEVAKILEVPRMRAYEVATFYTMFNRQPVGKYFLQVCATTPCMLRGAETITETI 141

>NUHM_NEUCR (P40915) NADH-ubiquinone oxidoreductase 24 kDa subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
          Length = 263

 Score =  120 bits (301), Expect = 3e-27
 Identities = 51/115 (44%), Positives = 84/115 (73%)
 Frame = +2

Query: 212 SRTFSSALNYHIDSPDNNPNMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQH 391
           +R  S  L  H ++PDNNP++P++F+  N + + EI+  YP  YK++ ++P+LDL Q+QH
Sbjct: 39  ARRPSDTLMVHRNTPDNNPDIPFKFSADNEKVIEEIIKRYPPQYKKAAVMPLLDLGQRQH 98

Query: 392 GGWVPVAAMDAIAKIVGVAPIRVYEVATFYSMFNRTKVGKYHLLVCGTTPCMIRG 556
           G +  ++ M+ +A+++ + P+RVYEVA+FY+M+NRT VGK+H+  C TTPC + G
Sbjct: 99  G-FCSISVMNEVARLLEMPPMRVYEVASFYTMYNRTPVGKFHVQACTTTPCQLGG 152

>NUOE_RICCN (Q92ID9) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E) (NDH-1, chain E)
          Length = 167

 Score =  116 bits (291), Expect = 4e-26
 Identities = 52/95 (54%), Positives = 71/95 (74%)
 Frame = +2

Query: 284 FTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIRVY 463
           F K N+    EI+  YP + K+S I+P+LDLAQ+Q+GGW+PV A++ +A ++ +  IR Y
Sbjct: 10  FDKKNLNLAEEIIKKYPPHGKRSAILPLLDLAQRQNGGWLPVPAIEYVANMLAMPYIRAY 69

Query: 464 EVATFYSMFNRTKVGKYHLLVCGTTPCMIRGSRDI 568
           EVATFY+MFN  +VGKYH+ VC TTPC +RGS DI
Sbjct: 70  EVATFYTMFNLKRVGKYHIQVCTTTPCWLRGSDDI 104

>NUOE_RICPR (Q9ZDH5) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E) (NDH-1, chain E)
          Length = 177

 Score =  108 bits (269), Expect = 1e-23
 Identities = 48/100 (48%), Positives = 70/100 (70%)
 Frame = +2

Query: 269 NMPWEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVA 448
           N  + F K N+     I+  YP   K+S I+P+LDLAQ+Q+GGW+ V+A++ +A ++ + 
Sbjct: 7   NFTFAFDKKNLNLAETIIKKYPPEGKRSAILPLLDLAQRQNGGWLHVSAIEYVANMLEMP 66

Query: 449 PIRVYEVATFYSMFNRTKVGKYHLLVCGTTPCMIRGSRDI 568
            +R YEVATFY+MFN   +GKYH+ VC TTPC +RGS +I
Sbjct: 67  YMRAYEVATFYTMFNLNPIGKYHIQVCTTTPCWLRGSDNI 106

>NUOE1_RHIME (P56909) NADH-quinone oxidoreductase chain E 1 (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E 1) (NDH-1, chain E 1)
          Length = 275

 Score = 89.0 bits (219), Expect = 9e-18
 Identities = 45/96 (46%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
 Frame = +2

Query: 284 FTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIRVY 463
           F+K N       +  YP   +QS +IP+L  AQ+Q G WV  AA++++A ++G+A IRV 
Sbjct: 18  FSKENAAWAEATIKKYPEGREQSAVIPLLMRAQEQDG-WVTRAAIESVADMLGMAYIRVL 76

Query: 464 EVATFYSMFNRTKVG-KYHLLVCGTTPCMIRGSRDI 568
           EVATFY+ F    VG + H+ VCGTTPCM+RG+ D+
Sbjct: 77  EVATFYTQFQLQPVGTRAHVQVCGTTPCMLRGAEDL 112

>NQO2_PARDE (P29914) NADH-quinone oxidoreductase chain 2 (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain 2) (NDH-1, chain 2)
          Length = 239

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
 Frame = +2

Query: 278 WEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIR 457
           +EFT AN+E     ++ YP   +QS IIP+L  AQ+Q  GW+   A++  A ++G+  IR
Sbjct: 13  FEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQE-GWLSRPAIEYCADLLGMPYIR 71

Query: 458 VYEVATFYSMFNRTKVGKY-HLLVCGTTPCMIRGSRDI 568
             EVATFY MF    VG   H+ +CGTT CMI G+ D+
Sbjct: 72  ALEVATFYFMFQLQPVGSVAHIQICGTTTCMICGAEDL 109

>NQO2_THET8 (Q56221) NADH-quinone oxidoreductase subunit 2 (EC 1.6.99.5) (NADH|
           dehydrogenase I chain 2) (NDH-1 subunit 2)
          Length = 180

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 34/93 (36%), Positives = 53/93 (56%)
 Frame = +2

Query: 308 VNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIRVYEVATFYSM 487
           + E  + YP   +++ I+P+L   QQ+ G W+    ++ IA++VG  P  V  VA+FYS 
Sbjct: 10  LEETFAKYPPEGRRAAIMPLLRRVQQEEG-WIRPERIEEIARLVGTTPTEVMGVASFYSY 68

Query: 488 FNRTKVGKYHLLVCGTTPCMIRGSRDIEDALLE 586
           +     GKYHL VC T  C + G+ ++ D L E
Sbjct: 69  YQFVPTGKYHLQVCATLSCKLAGAEELWDYLTE 101

>NUOE2_RHIME (P56910) NADH-quinone oxidoreductase chain E 2 (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E 2) (NDH-1, chain E 2)
          Length = 168

 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 32/86 (37%), Positives = 57/86 (66%)
 Frame = +2

Query: 302 EKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIRVYEVATFY 481
           E++    + YP   ++S I+P L +AQ++HG  +P   ++ +A+I+GV  + VYE+ATFY
Sbjct: 5   EEIEAAAARYPD--RRSAIMPALMIAQKEHGH-LPGPVLEEVAQILGVERVWVYELATFY 61

Query: 482 SMFNRTKVGKYHLLVCGTTPCMIRGS 559
           ++F+   +G++HL +C    CM+ GS
Sbjct: 62  TLFHTEPIGRFHLQLCDNVSCMLCGS 87

>NUHM_SCHPO (O13691) Probable NADH-ubiquinone oxidoreductase 24 kDa subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
          Length = 162

 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
 Frame = +2

Query: 284 FTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIRVY 463
           F   N++    IL+ YP  ++ + ++P+LDLAQ+QHG W+P  AM  IA + GV+   V+
Sbjct: 7   FKPENLQLAKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSIDYVH 66

Query: 464 EVATFY--SMFNRTKVGKYHLLVCGTTPC 544
            +   Y    F R K  K  + +C +  C
Sbjct: 67  SLILAYPNDFFWRPK--KPRVRICNSWMC 93

>NUOE_SHIFL (P0AFD3) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E) (NDH-1, chain E) (NUO5)
          Length = 166

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 35/101 (34%), Positives = 53/101 (52%)
 Frame = +2

Query: 278 WEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIR 457
           +E + A  E +   + HY     ++  I  L + Q+Q G WVP  A+ AIA ++G+    
Sbjct: 12  FELSAAEREAIEHEMHHYED--PRAASIEALKIVQKQRG-WVPDGAIHAIADVLGIPASD 68

Query: 458 VYEVATFYSMFNRTKVGKYHLLVCGTTPCMIRGSRDIEDAL 580
           V  VATFYS   R  VG++ +  C +  C I G + I+ AL
Sbjct: 69  VEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAAL 109

>NUOE_ECOLI (P0AFD1) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E) (NDH-1, chain E) (NUO5)
          Length = 166

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 35/101 (34%), Positives = 53/101 (52%)
 Frame = +2

Query: 278 WEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIR 457
           +E + A  E +   + HY     ++  I  L + Q+Q G WVP  A+ AIA ++G+    
Sbjct: 12  FELSAAEREAIEHEMHHYED--PRAASIEALKIVQKQRG-WVPDGAIHAIADVLGIPASD 68

Query: 458 VYEVATFYSMFNRTKVGKYHLLVCGTTPCMIRGSRDIEDAL 580
           V  VATFYS   R  VG++ +  C +  C I G + I+ AL
Sbjct: 69  VEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAAL 109

>NUOE_ECOL6 (P0AFD2) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E) (NDH-1, chain E) (NUO5)
          Length = 166

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 35/101 (34%), Positives = 53/101 (52%)
 Frame = +2

Query: 278 WEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIR 457
           +E + A  E +   + HY     ++  I  L + Q+Q G WVP  A+ AIA ++G+    
Sbjct: 12  FELSAAEREAIEHEMHHYED--PRAASIEALKIVQKQRG-WVPDGAIHAIADVLGIPASD 68

Query: 458 VYEVATFYSMFNRTKVGKYHLLVCGTTPCMIRGSRDIEDAL 580
           V  VATFYS   R  VG++ +  C +  C I G + I+ AL
Sbjct: 69  VEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAAL 109

>NUOE_SALTY (P0A1Y8) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E) (NDH-1, chain E)
          Length = 166

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 35/101 (34%), Positives = 52/101 (51%)
 Frame = +2

Query: 278 WEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIR 457
           +E + A  E +     HY     ++  I  L + Q+Q G WVP  A+ AIA ++G+    
Sbjct: 12  FELSAAEREAIEHEKHHYED--PRAASIEALKIVQKQRG-WVPDGAIYAIADVLGIPASD 68

Query: 458 VYEVATFYSMFNRTKVGKYHLLVCGTTPCMIRGSRDIEDAL 580
           V  VATFYS   R  VG++ +  C +  C I G + I+ AL
Sbjct: 69  VEGVATFYSQIFRQPVGRHVIRYCDSVVCHITGYQGIQAAL 109

>NUOE_SALTI (P0A1Y9) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E) (NDH-1, chain E)
          Length = 166

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 35/101 (34%), Positives = 52/101 (51%)
 Frame = +2

Query: 278 WEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIR 457
           +E + A  E +     HY     ++  I  L + Q+Q G WVP  A+ AIA ++G+    
Sbjct: 12  FELSAAEREAIEHEKHHYED--PRAASIEALKIVQKQRG-WVPDGAIYAIADVLGIPASD 68

Query: 458 VYEVATFYSMFNRTKVGKYHLLVCGTTPCMIRGSRDIEDAL 580
           V  VATFYS   R  VG++ +  C +  C I G + I+ AL
Sbjct: 69  VEGVATFYSQIFRQPVGRHVIRYCDSVVCHITGYQGIQAAL 109

>NUOE_MYCTU (P65573) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E) (NDH-1, chain E)
          Length = 252

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 31/91 (34%), Positives = 47/91 (51%)
 Frame = +2

Query: 314 EILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIRVYEVATFYSMFN 493
           EI+  YP   ++S ++P+L L Q +     P A +   A  +G+    V  VA+FY+M+ 
Sbjct: 46  EIIGRYPD--RRSALLPLLHLVQGEDSYLTP-AGLRFCADQLGLTGAEVSAVASFYTMYR 102

Query: 494 RTKVGKYHLLVCGTTPCMIRGSRDIEDALLE 586
           R   G+Y + VC  T C + G   I D L E
Sbjct: 103 RRPTGEYLVGVCTNTLCAVMGGDAIFDRLKE 133

>NUOE_MYCBO (P65574) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E) (NDH-1, chain E)
          Length = 252

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 31/91 (34%), Positives = 47/91 (51%)
 Frame = +2

Query: 314 EILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIRVYEVATFYSMFN 493
           EI+  YP   ++S ++P+L L Q +     P A +   A  +G+    V  VA+FY+M+ 
Sbjct: 46  EIIGRYPD--RRSALLPLLHLVQGEDSYLTP-AGLRFCADQLGLTGAEVSAVASFYTMYR 102

Query: 494 RTKVGKYHLLVCGTTPCMIRGSRDIEDALLE 586
           R   G+Y + VC  T C + G   I D L E
Sbjct: 103 RRPTGEYLVGVCTNTLCAVMGGDAIFDRLKE 133

>NUOE_BUCAI (P57255) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E) (NDH-1, chain E)
          Length = 162

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 26/66 (39%), Positives = 37/66 (56%)
 Frame = +2

Query: 383 QQHGGWVPVAAMDAIAKIVGVAPIRVYEVATFYSMFNRTKVGKYHLLVCGTTPCMIRGSR 562
           Q+  GWV   A+ AIA+I+ + P  V  VATFYS   R  VG+  +  C +  C + G +
Sbjct: 40  QKKRGWVSDQAIYAIAEILHINPSDVEGVATFYSQIFRKPVGRNIIRYCDSVVCFLTGYK 99

Query: 563 DIEDAL 580
            I+ AL
Sbjct: 100 RIQIAL 105

>NUOE_AQUAE (O66842) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E) (NDH-1, chain E)
          Length = 160

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 27/101 (26%), Positives = 51/101 (50%)
 Frame = +2

Query: 278 WEFTKANMEKVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIR 457
           +EF +    K+ E ++++P   K+  I+  L   Q  +G ++P  ++  +A ++ +    
Sbjct: 6   FEFPEELKTKLQEHINYFPK--KRQAILLCLHEIQNYYG-YIPPESLKPLADMLELPLNH 62

Query: 458 VYEVATFYSMFNRTKVGKYHLLVCGTTPCMIRGSRDIEDAL 580
           V  V  FY MF+R    KY + VC +  C + G+  +  AL
Sbjct: 63  VEGVVAFYDMFDREDKAKYRIRVCVSIVCHLMGTNKLLKAL 103

>NUOE_BUCAP (Q8K9Y4) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E) (NDH-1, chain E)
          Length = 168

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 2/101 (1%)
 Frame = +2

Query: 284 FTKANMEKVNEILSH--YPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIR 457
           FT    E +NEI     Y  N  +S  I  L + Q++ G WV   A+  IA I+ + P  
Sbjct: 14  FTLTTFE-INEIEKQKKYYEN-SRSVSIEALKIVQKKRG-WVCDQAIIEIANILNLNPSE 70

Query: 458 VYEVATFYSMFNRTKVGKYHLLVCGTTPCMIRGSRDIEDAL 580
           V  VATFYS   R  VG+  +  C +  C + G   I+  L
Sbjct: 71  VESVATFYSQIYRQPVGRNVIRYCDSVVCYLTGYEKIKKFL 111

>NUOE_BUCBP (Q89AU3) NADH-quinone oxidoreductase chain E (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain E) (NDH-1, chain E)
          Length = 171

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = +2

Query: 338 NYK--QSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIRVYEVATFYSMFNRTKVGK 511
           NY+  +S +I +L   Q+ +G W+    +  +A I+ ++   + E+ATFYS   R  +G+
Sbjct: 33  NYRTVRSSLIEILKFVQKSYG-WISNELITELACILKISKCDIEEIATFYSQIFRQPIGR 91

Query: 512 YHLLVCGTTPCMIRGSRDIEDAL 580
             +  C +  C + G   I  +L
Sbjct: 92  NIIKYCDSVVCYVNGCEKIRCSL 114

>HOXF_RALEU (P22317) NAD-reducing hydrogenase hoxS alpha subunit (EC 1.12.1.2)|
          Length = 602

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 24/92 (26%), Positives = 48/92 (52%)
 Frame = +2

Query: 305 KVNEILSHYPSNYKQSGIIPMLDLAQQQHGGWVPVAAMDAIAKIVGVAPIRVYEVATFYS 484
           ++  IL  Y S+  ++ +I +L   Q ++G  +P A +  +   + ++P+ + E A+FY 
Sbjct: 4   RITTILERYRSD--RTRLIDILWDVQHEYGH-IPDAVLPQLGAGLKLSPLDIRETASFYH 60

Query: 485 MFNRTKVGKYHLLVCGTTPCMIRGSRDIEDAL 580
            F     GKY + +C +    I G + + +AL
Sbjct: 61  FFLDKPSGKYRIYLCNSVIAKINGYQAVREAL 92

>ZDH24_RAT (Q2TGI5) Probable palmitoyltransferase ZDHHC24 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 24) (DHHC-24)
           (Membrane-associated zinc finger protein DHHC25)
          Length = 284

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +3

Query: 369 LILHSSSMVDGSQLQQWTLLLK*SELRRSGSMKLQHSTQCSIGPRWENITFW 524
           L+ H   ++ G    +W      +  + S  + + H+ Q ++GPRW  + FW
Sbjct: 214 LLFHGMLLLRGQTTWEW------ARGQHSYDLGMSHNLQAALGPRWALVWFW 259

>CITE2_MOUSE (O35740) Cbp/p300-interacting transactivator 2 (MSG-related protein|
           1) (MRG-1)
          Length = 269

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
 Frame = +1

Query: 241 PHRFAGQQPQHAVGVHQGE---YGEGQRNTIS 327
           PH    QQPQHA     GE   YG G  N  S
Sbjct: 36  PHHHQQQQPQHAFNALMGEHIHYGAGNMNATS 67

>CITE2_HUMAN (Q99967) Cbp/p300-interacting transactivator 2 (MSG-related protein|
           1) (MRG-1) (P35srj)
          Length = 270

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
 Frame = +1

Query: 241 PHRFAGQQPQHAVGVHQGE---YGEGQRNTIS 327
           PH    QQPQHA     GE   YG G  N  S
Sbjct: 36  PHHHQQQQPQHAFNALMGEHIHYGAGNMNATS 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,070,926
Number of Sequences: 219361
Number of extensions: 1234531
Number of successful extensions: 3912
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3897
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)